Wall clock time and date at job start Tue Mar 9 2021 13:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35994 * 117.00367 * 2 1 4 4 C 1.39156 * 120.07579 * 179.97438 * 3 2 1 5 5 O 1.35997 * 120.06847 * 0.02902 * 4 3 2 6 6 C 1.42908 * 116.99676 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.46887 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00472 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99538 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99665 * 179.72653 * 9 7 6 11 11 H 1.08999 * 109.47228 * 325.27715 * 10 9 7 12 12 C 1.52999 * 109.47341 * 85.27876 * 10 9 7 13 13 C 1.52997 * 109.47188 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.46860 * 299.99296 * 13 12 10 15 15 H 1.08999 * 109.47459 * 300.00495 * 14 13 12 16 16 C 1.50701 * 109.47093 * 180.02562 * 14 13 12 17 17 N 1.30717 * 125.52872 * 300.03460 * 16 14 13 18 18 N 1.40442 * 106.79112 * 179.97438 * 17 16 14 19 19 C 1.34435 * 106.35741 * 359.97438 * 18 17 16 20 20 C 1.50693 * 125.96415 * 180.02562 * 19 18 17 21 21 N 1.30829 * 108.07184 * 359.75595 * 19 18 17 22 22 C 1.53003 * 109.46811 * 60.01012 * 14 13 12 23 23 C 1.53001 * 109.47193 * 205.27836 * 10 9 7 24 24 C 1.38558 * 119.85390 * 180.29634 * 4 3 2 25 25 C 1.38241 * 119.99993 * 359.47760 * 24 4 3 26 26 C 1.38251 * 120.14873 * 0.50168 * 25 24 4 27 27 C 1.50700 * 119.93002 * 179.74433 * 26 25 24 28 28 O 1.42894 * 109.47000 * 245.02459 * 27 26 25 29 29 Si 1.86301 * 109.46936 * 5.02925 * 27 26 25 30 30 C 1.38249 * 120.14200 * 359.77688 * 26 25 24 31 31 H 1.09001 * 109.47193 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46887 * 300.00371 * 1 2 3 33 33 H 1.09008 * 109.46870 * 60.00190 * 1 2 3 34 34 H 1.09003 * 109.46467 * 60.00362 * 6 5 4 35 35 H 1.08993 * 109.47113 * 300.00627 * 6 5 4 36 36 H 0.97001 * 120.00485 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46823 * 300.00095 * 12 10 9 38 38 H 1.08999 * 109.47091 * 59.99755 * 12 10 9 39 39 H 1.09002 * 109.46693 * 180.02562 * 13 12 10 40 40 H 1.08993 * 109.47585 * 60.00233 * 13 12 10 41 41 H 0.97003 * 126.82411 * 180.02562 * 18 17 16 42 42 H 1.09000 * 109.47294 * 89.97393 * 20 19 18 43 43 H 1.08997 * 109.47571 * 209.97968 * 20 19 18 44 44 H 1.09006 * 109.47357 * 329.97892 * 20 19 18 45 45 H 1.09000 * 109.47291 * 180.02562 * 22 14 13 46 46 H 1.08999 * 109.47531 * 59.99527 * 22 14 13 47 47 H 1.08999 * 109.46935 * 300.00059 * 23 10 9 48 48 H 1.09004 * 109.47138 * 59.99988 * 23 10 9 49 49 H 1.08005 * 120.00058 * 179.70602 * 24 4 3 50 50 H 1.08001 * 119.92860 * 180.25600 * 25 24 4 51 51 H 1.08999 * 109.46889 * 125.03074 * 27 26 25 52 52 H 0.96699 * 114.00048 * 60.00999 * 28 27 26 53 53 H 1.48495 * 109.99601 * 179.97438 * 29 27 26 54 54 H 1.48498 * 110.00000 * 301.31601 * 29 27 26 55 55 H 1.07997 * 119.99595 * 179.97438 * 30 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1475 0.0005 6 6 5.6004 0.3005 0.0005 7 6 6.2518 -1.0585 0.0010 8 8 5.5669 -2.0594 0.0009 9 7 7.5957 -1.1614 0.0017 10 6 8.2290 -2.4824 0.0082 11 1 7.6244 -3.1723 0.5970 12 6 8.3425 -3.0008 -1.4268 13 6 9.0034 -4.3807 -1.4198 14 6 10.4000 -4.2741 -0.8041 15 1 11.0050 -3.5845 -1.3927 16 6 11.0512 -5.6331 -0.7978 17 7 10.5905 -6.6934 -0.1876 18 7 11.4995 -7.7338 -0.4399 19 6 12.4711 -7.2099 -1.2074 20 6 13.6743 -7.9464 -1.7371 21 7 12.1865 -5.9506 -1.4189 22 6 10.2865 -3.7559 0.6310 23 6 9.6256 -2.3754 0.6238 24 6 4.0603 2.5232 0.0068 25 6 3.3031 3.6797 0.0015 26 6 1.9225 3.6057 0.0005 27 6 1.1018 4.8696 0.0006 28 8 0.3645 4.9587 1.2213 29 14 2.2312 6.3434 -0.1519 30 6 1.2933 2.3747 0.0001 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5138 -0.8901 34 1 5.9065 0.8501 0.8906 35 1 5.9066 0.8503 -0.8894 36 1 8.1435 -0.3610 0.0021 37 1 7.3475 -3.0771 -1.8653 38 1 8.9471 -2.3109 -2.0155 39 1 9.0846 -4.7497 -2.4422 40 1 8.3984 -5.0703 -0.8313 41 1 11.4382 -8.6489 -0.1239 42 1 13.4362 -8.3806 -2.7081 43 1 14.5074 -7.2518 -1.8441 44 1 13.9498 -8.7397 -1.0421 45 1 11.2814 -3.6795 1.0695 46 1 9.6815 -4.4456 1.2196 47 1 10.2302 -1.6855 0.0351 48 1 9.5447 -2.0061 1.6462 49 1 5.1387 2.5838 0.0120 50 1 3.7909 4.6432 0.0022 51 1 0.4098 4.8535 -0.8414 52 1 0.9175 4.9777 2.0144 53 1 1.4339 7.5961 -0.1536 54 1 3.2003 6.3591 0.9732 55 1 0.2147 2.3197 -0.0003 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15608548_60476.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:08 Heat of formation + Delta-G solvation = -34.736568 kcal Electronic energy + Delta-G solvation = -37082.323412 eV Core-core repulsion = 32088.153676 eV Total energy + Delta-G solvation = -4994.169736 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 403.199 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.23039 -41.82120 -41.09072 -39.71493 -39.04944 -38.80281 -37.01845 -35.77586 -33.81252 -33.38224 -32.11213 -31.85871 -31.50736 -31.00087 -29.22061 -28.59191 -28.34411 -26.20850 -24.78257 -23.82486 -23.50398 -22.59851 -22.30081 -21.57806 -21.46620 -20.56723 -19.78254 -18.91836 -18.63940 -18.33494 -17.97777 -17.49544 -17.27687 -17.08063 -16.75490 -16.65762 -16.25579 -16.12771 -15.83268 -15.80032 -15.60410 -15.38857 -15.23834 -15.09175 -14.79853 -14.65871 -14.33288 -14.05086 -14.00481 -13.76238 -13.67347 -13.58314 -13.47820 -13.40194 -13.23882 -12.84935 -12.62897 -12.58463 -12.32965 -12.25856 -12.16690 -12.14887 -12.12866 -11.98581 -11.65049 -11.61426 -11.45463 -11.09874 -11.04782 -10.92187 -10.60360 -10.47054 -10.13043 -9.78010 -8.91379 -4.87515 0.17612 0.28686 0.55275 1.34081 1.49476 1.50819 1.64017 1.69630 1.78453 2.00198 2.31376 2.56209 2.58452 2.93568 3.41678 3.48427 3.57023 3.66281 3.67528 3.71302 3.80800 3.87106 3.92946 4.06206 4.08055 4.13350 4.15112 4.19738 4.21370 4.29006 4.30252 4.36406 4.37483 4.39342 4.46281 4.57622 4.62533 4.65043 4.65609 4.66366 4.67047 4.82450 5.01472 5.01790 5.02487 5.03701 5.09128 5.13400 5.13495 5.22865 5.27119 5.34296 5.37758 5.39227 5.49972 5.60589 5.98144 6.15444 6.45504 6.49988 6.57241 7.05311 7.19997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.076 3.924 4 C 0.085 3.915 5 O -0.315 6.315 6 C 0.035 3.965 7 C 0.511 3.489 8 O -0.574 6.574 9 N -0.703 5.703 10 C 0.147 3.853 11 H 0.060 0.940 12 C -0.119 4.119 13 C -0.099 4.099 14 C 0.010 3.990 15 H 0.111 0.889 16 C 0.225 3.775 17 N -0.344 5.344 18 N -0.481 5.481 19 C 0.285 3.715 20 C -0.077 4.077 21 N -0.572 5.572 22 C -0.100 4.100 23 C -0.111 4.111 24 C -0.159 4.159 25 C -0.111 4.111 26 C -0.116 4.116 27 C -0.085 4.085 28 O -0.551 6.551 29 Si 0.777 3.223 30 C -0.152 4.152 31 H 0.110 0.890 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.423 0.577 37 H 0.049 0.951 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.453 0.547 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.109 0.891 45 H 0.075 0.925 46 H 0.056 0.944 47 H 0.101 0.899 48 H 0.086 0.914 49 H 0.176 0.824 50 H 0.158 0.842 51 H 0.121 0.879 52 H 0.386 0.614 53 H -0.307 1.307 54 H -0.273 1.273 55 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.054 3.177 -1.969 9.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.250 6.250 3 C 0.030 3.970 4 C 0.040 3.960 5 O -0.229 6.229 6 C -0.043 4.043 7 C 0.297 3.703 8 O -0.452 6.452 9 N -0.357 5.357 10 C 0.043 3.957 11 H 0.078 0.922 12 C -0.158 4.158 13 C -0.138 4.138 14 C -0.011 4.011 15 H 0.129 0.871 16 C -0.058 4.058 17 N -0.173 5.173 18 N -0.200 5.200 19 C 0.008 3.992 20 C -0.136 4.136 21 N -0.303 5.303 22 C -0.139 4.139 23 C -0.149 4.149 24 C -0.177 4.177 25 C -0.129 4.129 26 C -0.116 4.116 27 C -0.193 4.193 28 O -0.359 6.359 29 Si 0.681 3.319 30 C -0.171 4.171 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.262 0.738 37 H 0.067 0.933 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.301 0.699 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.094 0.906 46 H 0.075 0.925 47 H 0.119 0.881 48 H 0.104 0.896 49 H 0.194 0.806 50 H 0.175 0.825 51 H 0.139 0.861 52 H 0.235 0.765 53 H -0.235 1.235 54 H -0.199 1.199 55 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.895 3.016 -1.794 8.640 hybrid contribution -0.708 -1.182 1.356 1.933 sum 7.187 1.834 -0.438 7.431 Atomic orbital electron populations 1.23280 0.76841 1.05164 1.02103 1.86190 1.22985 1.26717 1.89109 1.18681 0.89949 0.85585 1.02741 1.18606 0.88197 0.86577 1.02620 1.86229 1.18328 1.29066 1.89256 1.22796 0.79250 0.95168 1.07093 1.20601 0.83149 0.90827 0.75681 1.90779 1.64177 1.40246 1.50004 1.45696 1.05047 1.10231 1.74731 1.20954 0.94386 0.83961 0.96430 0.92190 1.21824 1.00601 0.96415 0.96923 1.21402 0.94210 0.97526 1.00672 1.19688 0.95246 0.87175 0.98961 0.87101 1.24598 0.91151 0.96814 0.93252 1.77929 1.15756 0.96893 1.26723 1.48010 1.17746 1.13259 1.41002 1.25212 0.93442 0.90032 0.90561 1.20638 0.90038 1.00003 1.02906 1.70395 1.17614 1.13842 1.28437 1.21448 1.01522 0.96767 0.94202 1.21737 0.93204 0.97268 1.02693 1.21381 1.02290 0.89271 1.04806 1.21046 0.92437 0.99105 1.00265 1.20114 0.94439 0.94676 1.02411 1.25316 1.02218 1.02268 0.89542 1.86570 1.37392 1.95601 1.16320 0.93961 0.77318 0.72367 0.88236 1.21019 1.00483 0.90556 1.05008 0.87170 0.91957 0.91535 0.85562 0.85198 0.73836 0.93252 0.88981 0.91971 0.92955 0.69852 0.87557 0.87986 0.87216 0.90610 0.92547 0.88101 0.89575 0.80631 0.82486 0.86083 0.76461 1.23533 1.19920 0.84147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 113.37 1.11 1.18 16 2 O -0.34 -4.01 10.28 -79.61 -0.82 -4.83 16 3 C 0.08 0.65 6.70 22.57 0.15 0.80 16 4 C 0.09 0.51 6.70 22.57 0.15 0.66 16 5 O -0.32 -2.89 9.46 -67.10 -0.63 -3.52 16 6 C 0.03 -0.07 5.22 71.24 0.37 0.30 16 7 C 0.51 2.18 7.87 87.66 0.69 2.87 16 8 O -0.57 -9.90 16.16 16.00 0.26 -9.64 16 9 N -0.70 2.61 5.08 -442.54 -2.25 0.37 16 10 C 0.15 -0.05 2.45 44.99 0.11 0.06 16 11 H 0.06 0.41 7.57 -2.39 -0.02 0.39 16 12 C -0.12 -0.11 5.50 30.59 0.17 0.06 16 13 C -0.10 -0.34 5.19 30.59 0.16 -0.18 16 14 C 0.01 0.02 2.66 -11.54 -0.03 -0.01 16 15 H 0.11 -0.02 8.14 -2.39 -0.02 -0.04 16 16 C 0.22 1.71 6.65 138.63 0.92 2.64 16 17 N -0.34 -3.01 12.80 -51.33 -0.66 -3.67 16 18 N -0.48 -1.06 7.45 -50.71 -0.38 -1.43 16 19 C 0.29 0.53 8.24 138.22 1.14 1.67 16 20 C -0.08 0.60 10.51 71.23 0.75 1.35 16 21 N -0.57 -4.37 11.19 -179.73 -2.01 -6.38 16 22 C -0.10 0.05 5.19 30.61 0.16 0.21 16 23 C -0.11 0.61 5.39 30.61 0.17 0.77 16 24 C -0.16 0.37 9.04 22.35 0.20 0.57 16 25 C -0.11 0.33 8.66 22.27 0.19 0.53 16 26 C -0.12 -0.04 5.35 -19.86 -0.11 -0.14 16 27 C -0.09 0.10 2.80 71.24 0.20 0.29 16 28 O -0.55 -1.31 12.83 -148.98 -1.91 -3.22 16 29 Si 0.78 -3.01 29.88 68.60 2.05 -0.96 16 30 C -0.15 -0.64 8.67 22.35 0.19 -0.44 16 31 H 0.11 0.07 8.14 -2.39 -0.02 0.06 16 32 H 0.06 0.08 7.66 -2.39 -0.02 0.06 16 33 H 0.07 0.03 7.66 -2.38 -0.02 0.01 16 34 H 0.13 -1.16 7.65 -2.39 -0.02 -1.17 16 35 H 0.13 -1.24 7.68 -2.39 -0.02 -1.26 16 36 H 0.42 -5.29 8.60 -92.71 -0.80 -6.09 16 37 H 0.05 0.31 8.14 -2.39 -0.02 0.29 16 38 H 0.09 -0.32 8.14 -2.39 -0.02 -0.34 16 39 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.45 -2.17 8.96 -213.09 -1.91 -4.08 16 42 H 0.11 -1.05 8.14 -2.39 -0.02 -1.07 16 43 H 0.10 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.11 -1.40 8.14 -2.38 -0.02 -1.42 16 45 H 0.08 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.06 0.19 8.14 -2.39 -0.02 0.18 16 47 H 0.10 -1.02 8.14 -2.39 -0.02 -1.03 16 48 H 0.09 -0.58 8.14 -2.38 -0.02 -0.60 16 49 H 0.18 -1.88 6.30 -2.91 -0.02 -1.90 16 50 H 0.16 -1.32 4.83 -2.91 -0.01 -1.33 16 51 H 0.12 -0.27 7.96 -2.39 -0.02 -0.29 16 52 H 0.39 -1.26 8.70 -74.06 -0.64 -1.90 16 53 H -0.31 -1.38 7.11 99.48 0.71 -0.67 16 54 H -0.27 0.42 7.00 99.48 0.70 1.12 16 55 H 0.14 0.38 6.30 -2.91 -0.02 0.37 16 Total: 0.00 -39.07 447.55 -2.01 -41.09 By element: Atomic # 1 Polarization: -18.63 SS G_CDS: -2.36 Total: -20.99 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 6.70 Total: 13.19 kcal Atomic # 7 Polarization: -5.83 SS G_CDS: -5.29 Total: -11.12 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -3.11 Total: -21.21 kcal Atomic # 14 Polarization: -3.01 SS G_CDS: 2.05 Total: -0.96 kcal Total: -39.07 -2.01 -41.09 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15608548_60476.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.349 kcal (2) G-P(sol) polarization free energy of solvation -39.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds