Wall clock time and date at job start Tue Mar 9 2021 13:44:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42897 * 1 3 3 Si 1.86306 * 109.47096 * 2 1 4 4 H 1.48507 * 109.47051 * 300.00432 * 3 2 1 5 5 H 1.48500 * 109.46887 * 60.00084 * 3 2 1 6 6 H 1.48498 * 109.47008 * 180.02562 * 3 2 1 7 7 C 1.50701 * 109.46660 * 240.00656 * 2 1 3 8 8 C 1.34233 * 126.50361 * 105.02283 * 7 2 1 9 9 N 1.36837 * 109.93996 * 179.75740 * 8 7 2 10 10 C 1.46495 * 125.06438 * 180.20862 * 9 8 7 11 11 C 1.50697 * 109.47327 * 265.02270 * 10 9 8 12 12 O 1.21287 * 119.99633 * 0.02562 * 11 10 9 13 13 N 1.34772 * 120.00412 * 179.97438 * 11 10 9 14 14 C 1.46402 * 118.75357 * 359.73870 * 13 11 10 15 15 C 1.53923 * 109.05988 * 253.44817 * 14 13 11 16 16 Si 1.85195 * 107.12400 * 308.57221 * 15 14 13 17 17 C 1.87455 * 111.52210 * 168.31988 * 16 15 14 18 18 C 1.55695 * 100.84909 * 114.79354 * 17 16 15 19 19 C 1.53786 * 111.39129 * 27.99938 * 18 17 16 20 20 C 1.56395 * 109.77545 * 312.16876 * 19 18 17 21 21 C 1.85197 * 110.14543 * 43.93596 * 16 15 14 22 22 C 1.46404 * 118.75503 * 180.02562 * 13 11 10 23 23 C 1.37694 * 109.87197 * 0.24279 * 9 8 7 24 24 C 1.39089 * 133.51293 * 180.02562 * 23 9 8 25 25 C 1.37789 * 119.77826 * 180.02562 * 24 23 9 26 26 C 1.38797 * 120.66637 * 359.90800 * 25 24 23 27 27 C 1.36665 * 120.52495 * 0.06676 * 26 25 24 28 28 C 1.39585 * 119.76767 * 359.97438 * 27 26 25 29 29 H 0.96706 * 114.00553 * 59.99636 * 1 2 3 30 30 H 1.08991 * 109.47247 * 120.00096 * 2 1 3 31 31 H 1.08002 * 125.03336 * 0.02716 * 8 7 2 32 32 H 1.08997 * 109.47518 * 25.02697 * 10 9 8 33 33 H 1.08998 * 109.47133 * 145.02513 * 10 9 8 34 34 H 1.08997 * 109.58564 * 13.18969 * 14 13 11 35 35 H 1.08994 * 109.58528 * 133.62488 * 14 13 11 36 36 H 1.09001 * 109.99801 * 189.12195 * 15 14 13 37 37 H 1.09001 * 109.84182 * 67.92953 * 15 14 13 38 38 H 1.08998 * 111.14115 * 232.69234 * 17 16 15 39 39 H 1.08996 * 111.14169 * 356.90148 * 17 16 15 40 40 H 1.08992 * 109.10380 * 267.49000 * 18 17 16 41 41 H 1.08996 * 109.10035 * 148.50488 * 18 17 16 42 42 H 1.08999 * 109.41389 * 192.08153 * 19 18 17 43 43 H 1.08994 * 109.42096 * 72.26890 * 19 18 17 44 44 H 1.09004 * 111.49168 * 281.95260 * 20 19 18 45 45 H 1.08997 * 111.49387 * 156.82926 * 20 19 18 46 46 H 1.08998 * 109.92514 * 196.56434 * 21 16 15 47 47 H 1.09002 * 109.92176 * 75.36835 * 21 16 15 48 48 H 1.08996 * 109.58492 * 226.37434 * 22 13 11 49 49 H 1.09000 * 109.58579 * 346.79969 * 22 13 11 50 50 H 1.07998 * 120.10973 * 359.97438 * 24 23 9 51 51 H 1.07996 * 119.67090 * 179.97438 * 25 24 23 52 52 H 1.07994 * 119.73427 * 180.02562 * 26 25 24 53 53 H 1.07998 * 120.11361 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 1 1.5549 2.4566 -1.2125 5 1 1.5550 2.4565 1.2125 6 1 3.5350 1.7565 -0.0006 7 6 1.9312 -0.7103 -1.2306 8 6 2.4610 -0.1375 -2.3229 9 7 2.8077 -1.0992 -3.2325 10 6 3.4181 -0.8409 -4.5389 11 6 2.3431 -0.7852 -5.5935 12 8 1.1813 -0.9450 -5.2842 13 7 2.6726 -0.5568 -6.8802 14 6 4.0826 -0.3608 -7.2221 15 6 4.3229 1.1280 -7.5301 16 14 3.0517 1.6392 -8.7761 17 6 2.9998 3.5018 -8.9812 18 6 3.4780 3.6477 -10.4557 19 6 3.1233 2.4029 -11.2862 20 6 3.5433 1.1117 -10.5101 21 6 1.3928 0.9605 -8.3100 22 6 1.6062 -0.5076 -7.8822 23 6 2.4967 -2.3457 -2.7372 24 6 2.6349 -3.6365 -3.2367 25 6 2.2170 -4.7108 -2.4818 26 6 1.6603 -4.5190 -1.2250 27 6 1.5156 -3.2595 -0.7147 28 6 1.9313 -2.1567 -1.4627 29 1 -0.3934 0.4418 -0.7650 30 1 1.7923 -0.5138 0.8899 31 1 2.5977 0.9248 -2.4614 32 1 3.9488 0.1108 -4.5103 33 1 4.1193 -1.6408 -4.7768 34 1 4.7076 -0.6623 -6.3816 35 1 4.3323 -0.9582 -8.0989 36 1 5.3228 1.2669 -7.9411 37 1 4.2090 1.7171 -6.6202 38 1 1.9862 3.8829 -8.8570 39 1 3.6892 3.9923 -8.2940 40 1 4.5587 3.7886 -10.4679 41 1 3.0012 4.5210 -10.9005 42 1 3.6509 2.4407 -12.2392 43 1 2.0488 2.3829 -11.4684 44 1 4.6160 0.9325 -10.5840 45 1 2.9726 0.2438 -10.8404 46 1 0.7197 1.0039 -9.1663 47 1 0.9773 1.5324 -7.4803 48 1 1.8920 -1.1029 -8.7494 49 1 0.6842 -0.9010 -7.4541 50 1 3.0675 -3.7961 -4.2133 51 1 2.3248 -5.7122 -2.8715 52 1 1.3382 -5.3719 -0.6460 53 1 1.0811 -3.1179 0.2639 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15733048_9818708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:44:56 Heat of formation + Delta-G solvation = -28.561747 kcal Electronic energy + Delta-G solvation = -32309.533491 eV Core-core repulsion = 28270.253857 eV Total energy + Delta-G solvation = -4039.279634 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 372.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.57338 -41.00969 -38.12303 -37.73583 -37.29175 -36.16380 -34.23916 -32.68594 -31.43715 -30.52584 -30.23816 -29.70108 -28.70096 -25.90287 -24.95980 -24.16740 -23.91217 -23.46882 -22.49308 -21.07512 -20.75248 -20.18338 -18.72962 -18.47173 -17.78778 -17.33956 -16.83511 -16.54151 -16.41999 -16.06865 -16.00931 -15.69106 -15.56313 -15.42605 -14.96815 -14.81288 -14.73986 -14.55796 -14.48675 -14.29102 -14.23918 -13.90629 -13.66611 -13.54456 -13.41356 -13.16348 -12.72046 -12.69066 -12.55710 -12.46704 -12.33857 -12.30941 -12.14682 -12.13908 -11.96657 -11.89972 -11.68332 -11.38387 -11.13629 -10.56835 -10.45896 -10.39445 -10.27738 -10.24774 -9.75979 -9.16089 -8.62969 0.14133 0.64601 1.21796 1.37761 1.40321 1.48458 1.57519 1.67841 1.74583 1.84679 1.91929 1.94750 2.07082 2.63667 2.95198 3.32828 3.60576 3.62824 3.71774 3.80519 4.00508 4.05977 4.08767 4.10896 4.12664 4.15368 4.22466 4.28307 4.30343 4.35234 4.42057 4.51751 4.60667 4.61589 4.63886 4.67668 4.68935 4.72348 4.79092 4.82947 4.90839 5.03071 5.09478 5.11021 5.14851 5.19035 5.28989 5.34654 5.39355 5.51078 5.51511 5.53285 5.56028 5.67300 5.74511 5.75742 6.10883 6.21857 6.31020 6.74881 7.01415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.053 4.053 3 Si 0.990 3.010 4 H -0.248 1.248 5 H -0.272 1.272 6 H -0.248 1.248 7 C -0.216 4.216 8 C 0.060 3.940 9 N -0.467 5.467 10 C 0.084 3.916 11 C 0.486 3.514 12 O -0.572 6.572 13 N -0.605 5.605 14 C 0.100 3.900 15 C -0.429 4.429 16 Si 1.058 2.942 17 C -0.426 4.426 18 C -0.123 4.123 19 C -0.129 4.129 20 C -0.409 4.409 21 C -0.444 4.444 22 C 0.117 3.883 23 C 0.090 3.910 24 C -0.136 4.136 25 C -0.106 4.106 26 C -0.154 4.154 27 C -0.085 4.085 28 C -0.115 4.115 29 H 0.383 0.617 30 H 0.110 0.890 31 H 0.190 0.810 32 H 0.158 0.842 33 H 0.145 0.855 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.116 0.884 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.067 0.933 41 H 0.051 0.949 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.099 0.901 49 H 0.062 0.938 50 H 0.131 0.869 51 H 0.146 0.854 52 H 0.138 0.862 53 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.033 1.665 -5.248 9.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.162 4.162 3 Si 0.812 3.188 4 H -0.172 1.172 5 H -0.197 1.197 6 H -0.171 1.171 7 C -0.223 4.223 8 C -0.065 4.065 9 N -0.150 5.150 10 C -0.040 4.040 11 C 0.273 3.727 12 O -0.451 6.451 13 N -0.338 5.338 14 C -0.021 4.021 15 C -0.517 4.517 16 Si 1.248 2.752 17 C -0.511 4.511 18 C -0.161 4.161 19 C -0.166 4.166 20 C -0.494 4.494 21 C -0.528 4.528 22 C -0.005 4.005 23 C -0.015 4.015 24 C -0.156 4.156 25 C -0.125 4.125 26 C -0.173 4.173 27 C -0.103 4.103 28 C -0.119 4.119 29 H 0.232 0.768 30 H 0.128 0.872 31 H 0.207 0.793 32 H 0.175 0.825 33 H 0.163 0.837 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.105 0.895 38 H 0.084 0.916 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.080 0.920 50 H 0.149 0.851 51 H 0.163 0.837 52 H 0.156 0.844 53 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 7.933 2.176 -4.846 9.547 hybrid contribution -1.004 0.034 -0.759 1.259 sum 6.930 2.210 -5.605 9.182 Atomic orbital electron populations 1.86459 1.18473 1.82161 1.49540 1.24529 0.84023 1.10915 0.96748 0.85187 0.80006 0.73139 0.80471 1.17169 1.19699 1.17086 1.20837 1.10633 0.92132 0.98743 1.21972 1.00565 0.94977 0.88987 1.43462 1.53133 1.03947 1.14456 1.22101 0.94097 1.08671 0.79118 1.21514 0.90232 0.76194 0.84727 1.90777 1.22202 1.50574 1.81536 1.48244 1.09175 1.70002 1.06400 1.21805 0.78617 0.97058 1.04599 1.26506 1.13448 0.99420 1.12311 0.78689 0.64932 0.65092 0.66490 1.26722 1.03300 1.22394 0.98644 1.21884 1.01509 0.97938 0.94727 1.22078 1.01161 0.93968 0.99442 1.26759 1.05478 0.99084 1.18120 1.26914 1.19985 1.00865 1.04999 1.21304 0.90798 0.97049 0.91375 1.18434 1.01715 0.86909 0.94424 1.20240 1.05240 0.89116 1.01042 1.21138 0.98041 0.98956 0.94346 1.20935 1.02277 0.97109 0.96970 1.20480 0.98694 0.91523 0.99648 1.19321 1.03827 0.93752 0.94992 0.76824 0.87164 0.79292 0.82471 0.83728 0.87146 0.87754 0.86543 0.89465 0.91610 0.89907 0.91406 0.92997 0.91907 0.92252 0.89148 0.90033 0.89367 0.92079 0.88260 0.91992 0.85078 0.83653 0.84426 0.85889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.80 12.88 -148.98 -1.92 -5.72 16 2 C -0.05 -0.21 3.06 71.24 0.22 0.01 16 3 Si 0.99 -0.10 26.08 68.60 1.79 1.69 16 4 H -0.25 0.32 7.03 99.48 0.70 1.02 16 5 H -0.27 -0.90 7.11 99.48 0.71 -0.20 16 6 H -0.25 0.15 7.11 99.48 0.71 0.86 16 7 C -0.22 -1.46 5.57 -18.63 -0.10 -1.57 16 8 C 0.06 0.20 9.89 83.00 0.82 1.02 16 9 N -0.47 -1.72 2.27 -520.01 -1.18 -2.90 16 10 C 0.08 -0.39 4.78 85.63 0.41 0.02 16 11 C 0.49 0.76 7.70 87.66 0.68 1.44 16 12 O -0.57 -7.50 15.68 -3.05 -0.05 -7.55 16 13 N -0.60 2.59 2.56 -817.76 -2.09 0.50 16 14 C 0.10 -1.22 5.76 86.71 0.50 -0.72 16 15 C -0.43 5.37 5.19 72.29 0.38 5.74 16 16 Si 1.06 -9.21 10.74 68.60 0.74 -8.48 16 17 C -0.43 1.80 5.84 72.91 0.43 2.22 16 18 C -0.12 0.36 6.10 31.79 0.19 0.55 16 19 C -0.13 0.46 5.97 32.04 0.19 0.65 16 20 C -0.41 3.00 5.95 73.16 0.44 3.44 16 21 C -0.44 1.36 5.20 72.46 0.38 1.74 16 22 C 0.12 -0.20 5.93 86.87 0.51 0.31 16 23 C 0.09 0.76 6.80 39.03 0.27 1.03 16 24 C -0.14 -0.82 10.00 22.37 0.22 -0.60 16 25 C -0.11 -0.56 10.01 22.30 0.22 -0.33 16 26 C -0.15 -1.04 9.97 22.04 0.22 -0.82 16 27 C -0.08 -0.82 10.05 22.23 0.22 -0.59 16 28 C -0.11 -1.21 6.35 -20.20 -0.13 -1.34 16 29 H 0.38 0.51 8.70 -74.05 -0.64 -0.14 16 30 H 0.11 0.37 7.96 -2.39 -0.02 0.35 16 31 H 0.19 -0.59 6.29 -2.91 -0.02 -0.61 16 32 H 0.16 -1.92 7.94 -2.39 -0.02 -1.94 16 33 H 0.15 -1.48 7.50 -2.39 -0.02 -1.49 16 34 H 0.11 -1.83 5.75 -2.39 -0.01 -1.85 16 35 H 0.10 -1.59 8.08 -2.39 -0.02 -1.61 16 36 H 0.12 -1.80 7.97 -2.39 -0.02 -1.82 16 37 H 0.09 -1.09 7.97 -2.39 -0.02 -1.11 16 38 H 0.06 -0.13 8.03 -2.39 -0.02 -0.15 16 39 H 0.08 -0.43 8.03 -2.39 -0.02 -0.45 16 40 H 0.07 -0.28 8.14 -2.39 -0.02 -0.30 16 41 H 0.05 -0.06 8.14 -2.39 -0.02 -0.07 16 42 H 0.06 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.06 -0.18 8.14 -2.39 -0.02 -0.20 16 44 H 0.09 -0.81 8.04 -2.38 -0.02 -0.83 16 45 H 0.08 -0.62 8.04 -2.39 -0.02 -0.63 16 46 H 0.09 -0.29 7.97 -2.39 -0.02 -0.31 16 47 H 0.06 0.06 7.97 -2.39 -0.02 0.04 16 48 H 0.10 -0.64 8.08 -2.39 -0.02 -0.66 16 49 H 0.06 0.34 6.91 -2.39 -0.02 0.32 16 50 H 0.13 0.17 8.06 -2.91 -0.02 0.15 16 51 H 0.15 0.00 8.06 -2.91 -0.02 -0.03 16 52 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 53 H 0.12 0.99 8.06 -2.91 -0.02 0.97 16 Total: 0.00 -25.19 417.60 4.35 -20.84 By element: Atomic # 1 Polarization: -11.59 SS G_CDS: 1.00 Total: -10.59 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: 6.06 Total: 12.20 kcal Atomic # 7 Polarization: 0.87 SS G_CDS: -3.27 Total: -2.40 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -1.97 Total: -13.26 kcal Atomic # 14 Polarization: -9.32 SS G_CDS: 2.53 Total: -6.79 kcal Total: -25.19 4.35 -20.84 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15733048_9818708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.721 kcal (2) G-P(sol) polarization free energy of solvation -25.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds