Wall clock time and date at job start Tue Mar 9 2021 12:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53899 * 113.59596 * 279.19659 * 5 3 2 7 7 C 1.53315 * 86.83253 * 220.49086 * 6 5 3 8 8 C 1.53134 * 87.75925 * 25.01052 * 7 6 5 9 9 C 1.53740 * 114.69653 * 268.65759 * 7 6 5 10 10 C 1.55304 * 102.73562 * 251.57672 * 9 7 6 11 11 C 1.54970 * 101.66399 * 325.01831 * 10 9 7 12 12 N 1.46378 * 115.40652 * 142.16167 * 7 6 5 13 13 C 1.34778 * 125.79908 * 311.07947 * 12 7 6 14 14 O 1.21693 * 120.00430 * 359.97438 * 13 12 7 15 15 C 1.46431 * 119.99730 * 179.97438 * 13 12 7 16 16 C 1.34807 * 120.00058 * 179.97438 * 15 13 12 17 17 C 1.47201 * 120.00234 * 179.97438 * 16 15 13 18 18 C 1.39830 * 120.16966 * 359.72534 * 17 16 15 19 19 C 1.37895 * 119.82817 * 179.81260 * 18 17 16 20 20 C 1.38404 * 120.16928 * 0.43992 * 19 18 17 21 21 C 1.50695 * 119.82819 * 179.76345 * 20 19 18 22 22 O 1.42904 * 109.47446 * 245.02300 * 21 20 19 23 23 Si 1.86301 * 109.47344 * 5.02627 * 21 20 19 24 24 C 1.38403 * 120.34695 * 359.78969 * 20 19 18 25 25 C 1.37900 * 120.16674 * 0.02562 * 24 20 19 26 26 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 27 27 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 29 29 H 1.08997 * 112.83549 * 50.33146 * 5 3 2 30 30 H 1.09003 * 113.63917 * 334.95953 * 6 5 3 31 31 H 1.08998 * 113.65031 * 105.96079 * 6 5 3 32 32 H 1.09007 * 113.64846 * 220.48724 * 8 7 6 33 33 H 1.09007 * 113.64655 * 89.49003 * 8 7 6 34 34 H 1.08997 * 110.76125 * 9.88666 * 9 7 6 35 35 H 1.09000 * 110.76188 * 133.07964 * 9 7 6 36 36 H 1.08999 * 110.98801 * 83.11076 * 10 9 7 37 37 H 1.08997 * 110.99200 * 206.91989 * 10 9 7 38 38 H 1.08998 * 110.36439 * 155.52736 * 11 10 9 39 39 H 1.09003 * 110.35896 * 277.72542 * 11 10 9 40 40 H 1.08004 * 119.99997 * 359.97438 * 15 13 12 41 41 H 1.08004 * 119.99945 * 359.97438 * 16 15 13 42 42 H 1.07999 * 120.08729 * 359.97438 * 18 17 16 43 43 H 1.08004 * 119.91751 * 180.20911 * 19 18 17 44 44 H 1.09004 * 109.47156 * 125.02632 * 21 20 19 45 45 H 0.96701 * 113.99938 * 180.02562 * 22 21 20 46 46 H 1.48496 * 110.00190 * 178.68006 * 23 21 20 47 47 H 1.48497 * 109.99912 * 300.00034 * 23 21 20 48 48 H 1.07994 * 119.92203 * 179.97438 * 24 20 19 49 49 H 1.07995 * 120.08415 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0824 1.3931 7 6 5.1685 2.2030 1.0154 8 6 4.1077 2.7150 0.0369 9 6 6.4736 1.7242 0.3590 10 6 7.5278 1.9722 1.4721 11 6 6.9873 3.2655 2.1330 12 7 5.5184 3.1227 2.0991 13 6 4.6476 3.7347 2.9259 14 8 3.4526 3.5401 2.8032 15 6 5.1393 4.6337 3.9719 16 6 4.2683 5.2462 4.7986 17 6 4.7626 6.1496 5.8504 18 6 6.1354 6.3705 5.9990 19 6 6.5905 7.2211 6.9843 20 6 5.6930 7.8485 7.8307 21 6 6.1992 8.7724 8.9082 22 8 5.8960 8.2199 10.1907 23 14 8.0436 8.9728 8.7386 24 6 4.3331 7.6313 7.6931 25 6 3.8622 6.7864 6.7102 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 4.0226 0.6566 -0.7724 30 1 3.5237 1.3432 2.2132 31 1 4.6708 0.1120 1.5271 32 1 4.5176 3.0521 -0.9153 33 1 3.4149 3.4315 0.4785 34 1 6.4154 0.6644 0.1113 35 1 6.6989 2.3150 -0.5289 36 1 7.5447 1.1474 2.1845 37 1 8.5166 2.1364 1.0439 38 1 7.3375 3.3403 3.1625 39 1 7.2981 4.1411 1.5629 40 1 6.1999 4.8061 4.0811 41 1 3.2077 5.0742 4.6891 42 1 6.8372 5.8781 5.3422 43 1 7.6503 7.3954 7.0982 44 1 5.7174 9.7451 8.8086 45 1 6.1932 8.7633 10.9334 46 1 8.5506 9.9068 9.7758 47 1 8.7122 7.6536 8.8725 48 1 3.6389 8.1241 8.3576 49 1 2.8008 6.6176 6.6043 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_12360594.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:16 Heat of formation + Delta-G solvation = -65.879058 kcal Electronic energy + Delta-G solvation = -31435.797411 eV Core-core repulsion = 27103.167826 eV Total energy + Delta-G solvation = -4332.629585 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.166 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.46090 -41.22942 -40.59806 -39.33138 -37.87628 -37.69501 -36.65123 -35.17195 -32.74161 -32.20139 -31.27335 -29.75529 -28.08548 -27.27234 -26.99672 -25.46546 -24.36481 -23.97629 -23.02523 -22.18715 -21.36340 -20.18160 -19.40751 -18.84241 -18.58637 -18.28250 -17.93886 -17.47680 -17.29654 -16.93453 -16.74278 -16.32402 -16.10410 -15.77143 -15.50570 -15.33061 -14.97964 -14.79763 -14.47977 -14.38986 -14.24495 -14.09338 -14.01414 -13.91929 -13.74418 -13.60670 -13.41151 -13.36997 -13.04654 -12.90651 -12.35247 -12.30491 -12.08177 -12.05612 -11.95946 -11.91023 -11.89050 -11.73255 -11.46066 -11.36225 -11.34883 -10.87002 -10.50526 -10.00906 -9.72107 -9.25039 -4.92987 -0.59079 0.36777 0.83978 1.04843 1.28764 1.60114 1.62211 1.93897 2.00383 2.16903 2.74074 3.20386 3.31267 3.34729 3.39051 3.55413 3.57603 3.69666 3.77104 3.82824 3.90265 3.92993 4.08753 4.12664 4.15232 4.20270 4.21642 4.25369 4.30093 4.36535 4.43776 4.52755 4.55502 4.61092 4.67260 4.74749 4.80294 4.81110 4.86424 4.93068 4.96225 4.97017 5.05433 5.09475 5.15806 5.22006 5.28382 5.34745 5.38112 5.45376 5.55553 5.58064 5.86421 6.48303 6.55611 6.62866 7.10534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.465 3.535 4 O -0.541 6.541 5 C -0.099 4.099 6 C -0.123 4.123 7 C 0.145 3.855 8 C -0.128 4.128 9 C -0.105 4.105 10 C -0.126 4.126 11 C 0.087 3.913 12 N -0.601 5.601 13 C 0.551 3.449 14 O -0.583 6.583 15 C -0.206 4.206 16 C -0.021 4.021 17 C -0.081 4.081 18 C -0.093 4.093 19 C -0.123 4.123 20 C -0.074 4.074 21 C -0.093 4.093 22 O -0.559 6.559 23 Si 0.769 3.231 24 C -0.107 4.107 25 C -0.104 4.104 26 H 0.062 0.938 27 H 0.134 0.866 28 H 0.052 0.948 29 H 0.164 0.836 30 H 0.063 0.937 31 H 0.108 0.892 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.111 0.889 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.162 0.838 41 H 0.118 0.882 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.095 0.905 45 H 0.395 0.605 46 H -0.288 1.288 47 H -0.293 1.293 48 H 0.131 0.869 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.357 -0.018 -2.083 9.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.430 6.430 5 C -0.118 4.118 6 C -0.161 4.161 7 C 0.059 3.941 8 C -0.166 4.166 9 C -0.143 4.143 10 C -0.164 4.164 11 C -0.035 4.035 12 N -0.332 5.332 13 C 0.344 3.656 14 O -0.465 6.465 15 C -0.226 4.226 16 C -0.041 4.041 17 C -0.081 4.081 18 C -0.111 4.111 19 C -0.140 4.140 20 C -0.074 4.074 21 C -0.201 4.201 22 O -0.369 6.369 23 Si 0.674 3.326 24 C -0.125 4.125 25 C -0.122 4.122 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.070 0.930 29 H 0.181 0.819 30 H 0.082 0.918 31 H 0.127 0.873 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.125 0.875 35 H 0.117 0.883 36 H 0.098 0.902 37 H 0.129 0.871 38 H 0.112 0.888 39 H 0.105 0.895 40 H 0.179 0.821 41 H 0.136 0.864 42 H 0.175 0.825 43 H 0.165 0.835 44 H 0.113 0.887 45 H 0.246 0.754 46 H -0.216 1.216 47 H -0.221 1.221 48 H 0.149 0.851 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.988 -0.348 -2.082 9.233 hybrid contribution -1.659 0.303 1.492 2.252 sum 7.330 -0.044 -0.590 7.353 Atomic orbital electron populations 1.23510 0.75280 1.05689 1.02110 1.86503 1.24621 1.33010 1.83701 1.24206 0.92978 0.80958 0.70897 1.90668 1.68037 1.37770 1.46564 1.22555 0.85504 1.01292 1.02466 1.23242 0.97881 1.00723 0.94267 1.22066 0.95472 0.89332 0.87197 1.23279 0.97783 0.94713 1.00829 1.22529 0.89563 1.03754 0.98469 1.22844 0.99596 0.96457 0.97482 1.22781 0.77220 1.00165 1.03292 1.48309 1.08537 1.44717 1.31613 1.18469 0.84973 0.80401 0.81775 1.90839 1.17427 1.65153 1.73069 1.23006 1.01974 1.00495 0.97087 1.22333 0.99885 0.90945 0.90893 1.19085 0.94172 0.98422 0.96457 1.21606 0.94478 0.97151 0.97836 1.21175 0.99934 0.96973 0.95944 1.19701 0.94038 0.97847 0.95805 1.25128 1.13577 0.97999 0.83375 1.86549 1.82515 1.52372 1.15491 0.94086 0.71658 0.78287 0.88555 1.21100 0.95401 0.98326 0.97711 1.21604 1.00318 0.95860 0.94417 0.91936 0.84807 0.92958 0.81858 0.91834 0.87314 0.88289 0.91497 0.87548 0.88317 0.90246 0.87067 0.88811 0.89477 0.82071 0.86398 0.82472 0.83461 0.88749 0.75434 1.21559 1.22055 0.85072 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 10.56 113.37 1.20 1.31 16 2 O -0.36 -3.00 10.57 -51.46 -0.54 -3.54 16 3 C 0.47 5.21 7.48 71.24 0.53 5.74 16 4 O -0.54 -10.46 15.65 21.98 0.34 -10.12 16 5 C -0.10 -0.30 4.06 -10.94 -0.04 -0.35 16 6 C -0.12 -0.38 6.68 31.00 0.21 -0.17 16 7 C 0.15 -0.01 1.34 4.02 0.01 0.00 16 8 C -0.13 -0.62 6.54 30.94 0.20 -0.42 16 9 C -0.11 0.91 6.08 31.63 0.19 1.10 16 10 C -0.13 1.32 7.09 32.06 0.23 1.55 16 11 C 0.09 -0.64 6.54 86.84 0.57 -0.07 16 12 N -0.60 -0.84 3.17 -771.25 -2.44 -3.29 16 13 C 0.55 4.39 7.44 86.38 0.64 5.04 16 14 O -0.58 -10.20 13.42 -4.32 -0.06 -10.26 16 15 C -0.21 -0.46 8.86 23.62 0.21 -0.25 16 16 C -0.02 -0.09 9.46 23.84 0.23 0.13 16 17 C -0.08 -0.22 5.87 -20.15 -0.12 -0.34 16 18 C -0.09 0.08 9.41 22.57 0.21 0.29 16 19 C -0.12 0.06 8.65 22.23 0.19 0.25 16 20 C -0.07 -0.14 5.39 -19.79 -0.11 -0.25 16 21 C -0.09 0.09 2.79 71.23 0.20 0.29 16 22 O -0.56 -1.22 12.81 -148.98 -1.91 -3.13 16 23 Si 0.77 -2.50 29.84 68.60 2.05 -0.45 16 24 C -0.11 -0.35 9.66 22.23 0.21 -0.13 16 25 C -0.10 -0.35 9.80 22.58 0.22 -0.13 16 26 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 27 H 0.13 -0.37 8.14 -2.38 -0.02 -0.39 16 28 H 0.05 0.33 8.13 -2.39 -0.02 0.31 16 29 H 0.16 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.06 0.74 6.50 -2.39 -0.02 0.73 16 31 H 0.11 -0.25 8.01 -2.39 -0.02 -0.27 16 32 H 0.10 0.03 8.01 -2.38 -0.02 0.01 16 33 H 0.07 1.00 6.02 -2.38 -0.01 0.98 16 34 H 0.11 -1.22 7.85 -2.39 -0.02 -1.24 16 35 H 0.10 -1.03 8.01 -2.39 -0.02 -1.05 16 36 H 0.08 -0.78 8.14 -2.39 -0.02 -0.80 16 37 H 0.11 -1.57 8.14 -2.39 -0.02 -1.59 16 38 H 0.09 -0.94 7.16 -2.39 -0.02 -0.96 16 39 H 0.09 -0.82 8.14 -2.39 -0.02 -0.84 16 40 H 0.16 -0.85 4.89 -2.91 -0.01 -0.86 16 41 H 0.12 0.93 7.52 -2.91 -0.02 0.91 16 42 H 0.16 -1.11 6.17 -2.91 -0.02 -1.13 16 43 H 0.15 -0.69 4.84 -2.91 -0.01 -0.71 16 44 H 0.09 -0.43 7.96 -2.39 -0.02 -0.45 16 45 H 0.40 -2.31 8.74 -74.06 -0.65 -2.96 16 46 H -0.29 -0.36 7.11 99.48 0.71 0.35 16 47 H -0.29 -0.93 7.04 99.48 0.70 -0.23 16 48 H 0.13 0.22 8.06 -2.91 -0.02 0.20 16 49 H 0.14 0.18 8.06 -2.91 -0.02 0.16 16 Total: 0.00 -30.37 398.06 2.78 -27.58 By element: Atomic # 1 Polarization: -10.75 SS G_CDS: 0.37 Total: -10.39 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: 4.98 Total: 13.59 kcal Atomic # 7 Polarization: -0.84 SS G_CDS: -2.44 Total: -3.29 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -2.17 Total: -27.05 kcal Atomic # 14 Polarization: -2.50 SS G_CDS: 2.05 Total: -0.45 kcal Total: -30.37 2.78 -27.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_12360594.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.294 kcal (2) G-P(sol) polarization free energy of solvation -30.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds