Wall clock time and date at job start Tue Mar 9 2021 12:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34223 * 116.99874 * 2 1 4 4 O 1.20826 * 120.00123 * 0.02562 * 3 2 1 5 5 C 1.50701 * 120.00052 * 179.97438 * 3 2 1 6 6 C 1.53895 * 113.59521 * 179.97438 * 5 3 2 7 7 C 1.53143 * 86.89498 * 139.53849 * 6 5 3 8 8 C 1.53147 * 87.73037 * 334.91932 * 7 6 5 9 9 C 1.53751 * 114.91138 * 218.68450 * 7 6 5 10 10 C 1.55299 * 102.82763 * 208.23153 * 9 7 6 11 11 C 1.54962 * 101.66690 * 34.75078 * 10 9 7 12 12 N 1.46378 * 115.38047 * 92.02585 * 7 6 5 13 13 C 1.34777 * 125.79756 * 308.72302 * 12 7 6 14 14 O 1.21575 * 120.00280 * 5.56356 * 13 12 7 15 15 C 1.47660 * 119.99979 * 185.55990 * 13 12 7 16 16 C 1.40004 * 120.45352 * 317.03005 * 15 13 12 17 17 N 1.31311 * 121.37937 * 179.97438 * 16 15 13 18 18 C 1.32821 * 121.88611 * 359.97438 * 17 16 15 19 19 N 1.37154 * 132.96104 * 180.02562 * 18 17 16 20 20 C 1.36945 * 110.11452 * 179.97438 * 19 18 17 21 21 C 1.34181 * 109.95071 * 0.02562 * 20 19 18 22 22 C 1.50701 * 126.59871 * 180.26529 * 21 20 19 23 23 O 1.42895 * 109.47149 * 254.68666 * 22 21 20 24 24 Si 1.86308 * 109.46968 * 14.68743 * 22 21 20 25 25 C 1.41020 * 120.08662 * 0.02562 * 18 17 16 26 26 C 1.39286 * 119.61781 * 359.97438 * 25 18 17 27 27 C 1.50700 * 121.03205 * 179.97438 * 26 25 18 28 28 H 1.08994 * 109.47121 * 299.99948 * 1 2 3 29 29 H 1.09000 * 109.47223 * 60.00275 * 1 2 3 30 30 H 1.09002 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.08999 * 112.83305 * 48.86333 * 5 3 2 32 32 H 1.09000 * 113.64682 * 25.04351 * 6 5 3 33 33 H 1.09000 * 113.73036 * 254.05138 * 6 5 3 34 34 H 1.09004 * 113.64605 * 139.57573 * 8 7 6 35 35 H 1.08997 * 113.64700 * 270.57844 * 8 7 6 36 36 H 1.08996 * 110.91179 * 89.79740 * 9 7 6 37 37 H 1.08999 * 110.67889 * 326.55718 * 9 7 6 38 38 H 1.09001 * 110.98709 * 276.65997 * 10 9 7 39 39 H 1.08995 * 110.99309 * 152.84507 * 10 9 7 40 40 H 1.08992 * 110.36498 * 204.48142 * 11 10 9 41 41 H 1.09000 * 110.45384 * 82.21915 * 11 10 9 42 42 H 1.08005 * 119.31237 * 359.97438 * 16 15 13 43 43 H 0.97001 * 124.94594 * 359.95495 * 19 18 17 44 44 H 1.08003 * 125.02497 * 180.02562 * 20 19 18 45 45 H 1.09004 * 109.47097 * 134.68071 * 22 21 20 46 46 H 0.96703 * 113.99957 * 179.97438 * 23 22 21 47 47 H 1.48503 * 109.99766 * 299.99591 * 24 22 21 48 48 H 1.48497 * 110.00284 * 61.31572 * 24 22 21 49 49 H 1.08999 * 109.46999 * 95.60247 * 27 26 25 50 50 H 1.08998 * 109.47396 * 215.60552 * 27 26 25 51 51 H 1.09003 * 109.46886 * 335.60616 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1076 2.7155 -0.0001 7 6 5.1672 2.2292 0.9930 8 6 4.1907 1.1214 1.3988 9 6 5.5098 3.2247 2.1135 10 6 6.9806 2.8638 2.4575 11 6 7.5387 2.4656 1.0678 12 7 6.4228 1.7707 0.3964 13 6 6.5397 0.8712 -0.6004 14 8 5.5448 0.4412 -1.1511 15 6 7.8763 0.4080 -1.0238 16 6 8.9303 1.3184 -1.1673 17 7 10.1261 0.9263 -1.5423 18 6 10.3971 -0.3475 -1.8032 19 7 11.5371 -0.9980 -2.2012 20 6 11.2919 -2.3387 -2.3349 21 6 10.0107 -2.6020 -2.0355 22 6 9.3431 -3.9529 -2.0533 23 8 8.4984 -4.0517 -3.2016 24 14 10.6422 -5.2867 -2.1213 25 6 9.3874 -1.3244 -1.6813 26 6 8.1069 -0.9452 -1.2858 27 6 7.0039 -1.9625 -1.1459 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 4.0236 0.6369 -0.7557 32 1 3.4144 3.4432 0.4218 33 1 4.5190 3.0290 -0.9596 34 1 4.6685 0.1551 1.5605 35 1 3.5206 1.4050 2.2103 36 1 4.8630 3.0751 2.9780 37 1 5.4380 4.2506 1.7522 38 1 7.0245 2.0241 3.1511 39 1 7.5110 3.7275 2.8584 40 1 8.3908 1.7952 1.1792 41 1 7.8266 3.3532 0.5044 42 1 8.7562 2.3650 -0.9654 43 1 12.3924 -0.5707 -2.3645 44 1 12.0219 -3.0752 -2.6368 45 1 8.7447 -4.0744 -1.1504 46 1 8.0358 -4.8974 -3.2780 47 1 11.4650 -5.1321 -3.3479 48 1 11.5076 -5.2147 -0.9168 49 1 6.9334 -2.2813 -0.1059 50 1 6.0579 -1.5175 -1.4544 51 1 7.2226 -2.8245 -1.7761 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_12890568.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:59:42 Heat of formation + Delta-G solvation = -15.261180 kcal Electronic energy + Delta-G solvation = -37540.994965 eV Core-core repulsion = 32795.944754 eV Total energy + Delta-G solvation = -4745.050211 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.04266 -42.53977 -41.24374 -39.68854 -38.56941 -37.69775 -37.68292 -36.64525 -35.16538 -33.02710 -32.11641 -30.96006 -29.73693 -28.94745 -28.17561 -26.96890 -26.55193 -25.53798 -24.70296 -24.18372 -23.31500 -21.97086 -21.48579 -20.47692 -19.59142 -19.10233 -18.91274 -18.47500 -18.28985 -17.94909 -17.43765 -17.27309 -17.13985 -16.98434 -16.38048 -16.15050 -16.01830 -15.41620 -15.35185 -15.14296 -15.05609 -14.82191 -14.45601 -14.37423 -14.31320 -14.19196 -14.04859 -13.86035 -13.79430 -13.58685 -13.49438 -13.35097 -13.12377 -12.97466 -12.79692 -12.64391 -12.54944 -12.12975 -11.96021 -11.94977 -11.86144 -11.74087 -11.40510 -11.18951 -11.15253 -10.95483 -10.31909 -10.15463 -9.83304 -9.68044 -9.24625 -4.90134 -0.37882 -0.15518 1.10148 1.24784 1.35054 1.47151 1.53183 1.73706 1.75237 1.79680 2.00584 2.58053 3.07986 3.29098 3.33919 3.38278 3.43910 3.48557 3.52983 3.59417 3.66428 3.76351 3.85791 3.97350 4.01758 4.07652 4.13729 4.20947 4.25352 4.26248 4.27941 4.39647 4.40730 4.53145 4.59400 4.62084 4.63316 4.64716 4.69351 4.71772 4.77183 4.90878 4.92731 4.96267 5.01585 5.08601 5.11166 5.21534 5.23765 5.30004 5.31174 5.37190 5.46484 5.63494 6.07744 6.32020 6.68494 6.73283 6.98692 7.11204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.366 6.366 3 C 0.468 3.532 4 O -0.544 6.544 5 C -0.153 4.153 6 C -0.117 4.117 7 C 0.148 3.852 8 C -0.112 4.112 9 C -0.112 4.112 10 C -0.125 4.125 11 C 0.086 3.914 12 N -0.588 5.588 13 C 0.595 3.405 14 O -0.541 6.541 15 C -0.230 4.230 16 C 0.177 3.823 17 N -0.515 5.515 18 C 0.287 3.713 19 N -0.564 5.564 20 C 0.066 3.934 21 C -0.157 4.157 22 C -0.054 4.054 23 O -0.564 6.564 24 Si 0.783 3.217 25 C -0.164 4.164 26 C 0.066 3.934 27 C -0.139 4.139 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.129 0.871 31 H 0.180 0.820 32 H 0.101 0.899 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.079 0.921 39 H 0.108 0.892 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.189 0.811 43 H 0.436 0.564 44 H 0.198 0.802 45 H 0.084 0.916 46 H 0.401 0.599 47 H -0.284 1.284 48 H -0.286 1.286 49 H 0.087 0.913 50 H 0.087 0.913 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.606 -4.519 4.805 8.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.282 6.282 3 C 0.313 3.687 4 O -0.435 6.435 5 C -0.170 4.170 6 C -0.155 4.155 7 C 0.062 3.938 8 C -0.150 4.150 9 C -0.150 4.150 10 C -0.163 4.163 11 C -0.035 4.035 12 N -0.318 5.318 13 C 0.386 3.614 14 O -0.422 6.422 15 C -0.237 4.237 16 C 0.010 3.990 17 N -0.228 5.228 18 C 0.054 3.946 19 N -0.170 5.170 20 C -0.061 4.061 21 C -0.164 4.164 22 C -0.163 4.163 23 O -0.374 6.374 24 Si 0.686 3.314 25 C -0.171 4.171 26 C 0.057 3.943 27 C -0.194 4.194 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.147 0.853 31 H 0.195 0.805 32 H 0.119 0.881 33 H 0.087 0.913 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.206 0.794 43 H 0.277 0.723 44 H 0.214 0.786 45 H 0.102 0.898 46 H 0.252 0.748 47 H -0.210 1.210 48 H -0.213 1.213 49 H 0.105 0.895 50 H 0.106 0.894 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.822 -3.519 4.204 7.997 hybrid contribution -0.769 0.438 -0.261 0.923 sum 5.053 -3.082 3.943 7.112 Atomic orbital electron populations 1.23517 0.75310 1.05548 1.02332 1.86542 1.24640 1.33440 1.83557 1.24427 0.92871 0.80836 0.70516 1.90612 1.68094 1.37341 1.47419 1.24148 0.85299 1.03002 1.04571 1.23141 0.97295 0.94781 1.00298 1.21447 0.83687 0.94869 0.93756 1.23153 0.97353 1.00075 0.94466 1.22550 0.97727 0.98337 0.96396 1.22826 0.95013 1.03311 0.95104 1.22880 0.89104 0.97367 0.94138 1.48126 1.08353 1.40815 1.34547 1.17652 0.87808 0.77526 0.78405 1.90168 1.37454 1.58897 1.55657 1.20331 0.95357 0.94784 1.13199 1.23038 0.84692 1.00248 0.91063 1.66547 1.23541 1.14939 1.17783 1.18757 0.87659 0.89747 0.98477 1.41511 1.11038 1.06283 1.58205 1.22016 0.97807 0.84306 1.01947 1.19989 0.93373 0.93464 1.09589 1.24338 1.02036 0.98314 0.91637 1.86500 1.63368 1.43207 1.44317 0.93804 0.76784 0.83944 0.76820 1.19699 0.93978 0.94783 1.08638 1.19968 0.93171 0.93474 0.87666 1.21231 0.96585 0.98063 1.03559 0.91850 0.92402 0.85309 0.80491 0.88080 0.91345 0.90186 0.87893 0.88512 0.88908 0.90212 0.87338 0.89766 0.88784 0.79399 0.72267 0.78552 0.89808 0.74796 1.21025 1.21307 0.89503 0.89414 0.88770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.56 113.37 1.20 1.29 16 2 O -0.37 -3.46 10.57 -51.35 -0.54 -4.00 16 3 C 0.47 5.26 7.48 71.24 0.53 5.80 16 4 O -0.54 -8.62 15.64 21.96 0.34 -8.28 16 5 C -0.15 -1.12 3.61 -10.94 -0.04 -1.16 16 6 C -0.12 -0.54 6.50 30.94 0.20 -0.34 16 7 C 0.15 -0.03 1.44 3.97 0.01 -0.02 16 8 C -0.11 -0.22 6.73 30.95 0.21 -0.01 16 9 C -0.11 0.66 6.30 31.64 0.20 0.86 16 10 C -0.12 1.04 7.09 32.05 0.23 1.27 16 11 C 0.09 -0.50 5.29 86.84 0.46 -0.04 16 12 N -0.59 -0.06 3.17 -770.17 -2.44 -2.49 16 13 C 0.60 3.13 6.83 86.73 0.59 3.73 16 14 O -0.54 -5.42 10.18 -3.95 -0.04 -5.46 16 15 C -0.23 -1.28 5.38 -19.99 -0.11 -1.39 16 16 C 0.18 0.66 9.13 85.20 0.78 1.43 16 17 N -0.51 -3.61 10.37 -191.74 -1.99 -5.59 16 18 C 0.29 2.10 8.42 134.02 1.13 3.23 16 19 N -0.56 -1.14 6.04 -192.25 -1.16 -2.30 16 20 C 0.07 0.09 10.43 82.97 0.87 0.96 16 21 C -0.16 -0.67 5.61 -18.64 -0.10 -0.77 16 22 C -0.05 0.08 1.87 71.24 0.13 0.22 16 23 O -0.56 0.38 11.61 -148.98 -1.73 -1.35 16 24 Si 0.78 -4.27 30.79 68.60 2.11 -2.15 16 25 C -0.16 -1.27 6.16 -20.19 -0.12 -1.39 16 26 C 0.07 0.47 5.97 -19.25 -0.11 0.35 16 27 C -0.14 -0.61 9.17 71.24 0.65 0.04 16 28 H 0.06 0.20 8.13 -2.39 -0.02 0.18 16 29 H 0.06 0.26 8.13 -2.39 -0.02 0.24 16 30 H 0.13 -0.33 8.14 -2.39 -0.02 -0.35 16 31 H 0.18 1.90 4.07 -81.36 -0.33 1.57 16 32 H 0.10 0.52 7.41 -2.39 -0.02 0.51 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.20 8.14 -2.38 -0.02 0.18 16 35 H 0.10 0.01 7.88 -2.39 -0.02 -0.01 16 36 H 0.10 -0.69 7.79 -2.39 -0.02 -0.71 16 37 H 0.09 -0.64 8.11 -2.39 -0.02 -0.66 16 38 H 0.08 -0.62 8.14 -2.39 -0.02 -0.64 16 39 H 0.11 -1.25 8.14 -2.39 -0.02 -1.27 16 40 H 0.08 -0.46 6.80 -2.39 -0.02 -0.48 16 41 H 0.09 -0.82 7.40 -2.39 -0.02 -0.84 16 42 H 0.19 -0.44 6.09 -2.91 -0.02 -0.46 16 43 H 0.44 -1.56 8.96 -92.71 -0.83 -2.39 16 44 H 0.20 -0.75 6.31 -2.91 -0.02 -0.76 16 45 H 0.08 -0.34 7.16 -2.38 -0.02 -0.36 16 46 H 0.40 -4.46 8.74 -74.06 -0.65 -5.11 16 47 H -0.28 0.05 7.05 99.48 0.70 0.75 16 48 H -0.29 0.06 7.11 99.48 0.71 0.77 16 49 H 0.09 0.13 8.14 -2.39 -0.02 0.11 16 50 H 0.09 0.68 5.67 -2.39 -0.01 0.66 16 51 H 0.09 0.31 4.83 -2.39 -0.01 0.29 16 Total: 0.00 -26.43 398.85 0.50 -25.92 By element: Atomic # 1 Polarization: -7.59 SS G_CDS: -0.74 Total: -8.34 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: 6.69 Total: 14.05 kcal Atomic # 7 Polarization: -4.81 SS G_CDS: -5.59 Total: -10.39 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.97 Total: -19.09 kcal Atomic # 14 Polarization: -4.27 SS G_CDS: 2.11 Total: -2.15 kcal Total: -26.43 0.50 -25.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_12890568.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.661 kcal (2) G-P(sol) polarization free energy of solvation -26.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds