Wall clock time and date at job start Tue Mar 9 2021 13:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99938 * 2 1 4 4 O 1.20822 * 119.99973 * 0.02562 * 3 2 1 5 5 C 1.50700 * 120.00068 * 179.97438 * 3 2 1 6 6 C 1.53899 * 113.59596 * 279.19659 * 5 3 2 7 7 C 1.53315 * 86.83253 * 220.49086 * 6 5 3 8 8 C 1.53134 * 87.75925 * 25.01052 * 7 6 5 9 9 C 1.53740 * 114.69653 * 268.65759 * 7 6 5 10 10 C 1.55304 * 102.73562 * 251.57672 * 9 7 6 11 11 C 1.54970 * 101.66399 * 325.01831 * 10 9 7 12 12 N 1.46378 * 115.40652 * 142.16167 * 7 6 5 13 13 C 1.34771 * 125.80072 * 311.05703 * 12 7 6 14 14 O 1.21283 * 120.00300 * 0.02562 * 13 12 7 15 15 C 1.50702 * 120.00326 * 179.97438 * 13 12 7 16 16 O 1.42901 * 109.47425 * 180.02562 * 15 13 12 17 17 C 1.35905 * 116.99982 * 180.02562 * 16 15 13 18 18 C 1.38709 * 120.05380 * 179.72372 * 17 16 15 19 19 N 1.48004 * 120.02828 * 0.02562 * 18 17 16 20 20 O 1.21800 * 119.99676 * 180.02562 * 19 18 17 21 21 O 1.21798 * 120.00068 * 0.02562 * 19 18 17 22 22 C 1.38170 * 119.94172 * 179.79056 * 18 17 16 23 23 C 1.38248 * 120.05471 * 0.48369 * 22 18 17 24 24 C 1.50693 * 119.94256 * 179.72416 * 23 22 18 25 25 O 1.42902 * 109.47405 * 300.02116 * 24 23 22 26 26 Si 1.86300 * 109.47249 * 180.02562 * 24 23 22 27 27 C 1.38286 * 120.10870 * 359.74488 * 23 22 18 28 28 C 1.38122 * 120.06027 * 0.02562 * 27 23 22 29 29 H 1.08996 * 109.47465 * 299.99911 * 1 2 3 30 30 H 1.08999 * 109.47008 * 59.99921 * 1 2 3 31 31 H 1.09006 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.08997 * 112.83549 * 50.33146 * 5 3 2 33 33 H 1.09003 * 113.63917 * 334.95953 * 6 5 3 34 34 H 1.08998 * 113.65031 * 105.96079 * 6 5 3 35 35 H 1.09007 * 113.64846 * 220.48724 * 8 7 6 36 36 H 1.09007 * 113.64655 * 89.49003 * 8 7 6 37 37 H 1.08997 * 110.76125 * 9.88666 * 9 7 6 38 38 H 1.09000 * 110.76188 * 133.07964 * 9 7 6 39 39 H 1.08999 * 110.98801 * 83.11076 * 10 9 7 40 40 H 1.08999 * 110.99036 * 206.88389 * 10 9 7 41 41 H 1.08998 * 110.36439 * 155.52736 * 11 10 9 42 42 H 1.09003 * 110.35896 * 277.72542 * 11 10 9 43 43 H 1.09005 * 109.46863 * 300.00025 * 15 13 12 44 44 H 1.08997 * 109.46999 * 59.99464 * 15 13 12 45 45 H 1.07993 * 119.97044 * 180.22952 * 22 18 17 46 46 H 1.09000 * 109.47340 * 60.02418 * 24 23 22 47 47 H 0.96698 * 113.99523 * 300.00038 * 25 24 23 48 48 H 1.48496 * 110.00251 * 179.97438 * 26 24 23 49 49 H 1.48496 * 110.00146 * 301.32409 * 26 24 23 50 50 H 1.08006 * 119.96780 * 180.02562 * 27 23 22 51 51 H 1.08003 * 120.03012 * 179.97438 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.1927 1.0824 1.3931 7 6 5.1685 2.2030 1.0154 8 6 4.1077 2.7150 0.0369 9 6 6.4736 1.7242 0.3590 10 6 7.5278 1.9722 1.4721 11 6 6.9873 3.2655 2.1330 12 7 5.5184 3.1227 2.0991 13 6 4.6476 3.7350 2.9256 14 8 3.4567 3.5407 2.8036 15 6 5.1536 4.6602 4.0022 16 8 4.0471 5.1814 4.7412 17 6 4.3322 6.0393 5.7560 18 6 3.3059 6.5875 6.5111 19 7 1.8989 6.2384 6.2129 20 8 0.9982 6.7206 6.8760 21 8 1.6418 5.4691 5.3043 22 6 3.5986 7.4560 7.5451 23 6 4.9124 7.7865 7.8209 24 6 5.2283 8.7388 8.9452 25 8 4.6000 9.9975 8.6942 26 14 7.0726 8.9770 9.0576 27 6 5.9370 7.2449 7.0665 28 6 5.6499 6.3725 6.0348 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 4.0226 0.6566 -0.7724 33 1 3.5237 1.3432 2.2132 34 1 4.6708 0.1120 1.5271 35 1 4.5176 3.0521 -0.9153 36 1 3.4149 3.4315 0.4785 37 1 6.4154 0.6644 0.1113 38 1 6.6989 2.3150 -0.5289 39 1 7.5447 1.1474 2.1845 40 1 8.5167 2.1358 1.0439 41 1 7.3375 3.3403 3.1625 42 1 7.2981 4.1411 1.5629 43 1 5.8121 4.1098 4.6743 44 1 5.7053 5.4818 3.5453 45 1 2.8002 7.8803 8.1357 46 1 4.8571 8.3283 9.8843 47 1 4.8836 10.4217 7.8727 48 1 7.3973 9.9147 10.1623 49 1 7.7404 7.6706 9.2867 50 1 6.9626 7.5043 7.2842 51 1 6.4505 5.9501 5.4456 There are 75 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 75 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15736542_4549638.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:01:40 Heat of formation + Delta-G solvation = -112.019070 kcal Electronic energy + Delta-G solvation = -39917.783989 eV Core-core repulsion = 34561.681135 eV Total energy + Delta-G solvation = -5356.102854 eV No. of doubly occupied orbitals = 75 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 407.160 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.33503 -42.51978 -41.73360 -41.15205 -39.91338 -38.90167 -37.71267 -37.63335 -37.37170 -36.68618 -33.53900 -32.83770 -32.24241 -30.12478 -29.44699 -28.02822 -27.86241 -27.01219 -26.60749 -25.38440 -24.25811 -23.38749 -22.84276 -22.16656 -20.98706 -20.61227 -19.82438 -19.39504 -19.14000 -18.79682 -18.67925 -18.23027 -18.00919 -17.88774 -17.66751 -17.48544 -17.14466 -16.70092 -16.40137 -16.16141 -16.11402 -15.71953 -15.57617 -15.34365 -14.95872 -14.72216 -14.49635 -14.28407 -14.15396 -14.09863 -13.97536 -13.77937 -13.63798 -13.41157 -13.36530 -13.22123 -12.95859 -12.75580 -12.41653 -12.34007 -12.32393 -12.27022 -12.21582 -12.08371 -11.96205 -11.94664 -11.91986 -11.89071 -11.44860 -11.37169 -10.86887 -10.84028 -10.57465 -9.82829 -9.73049 -4.99559 -1.35963 -0.27443 0.11523 0.31717 1.03140 1.12119 1.26459 1.39825 1.64066 1.67247 2.00585 2.03878 2.18362 3.07006 3.11464 3.22480 3.30824 3.34450 3.39495 3.50232 3.53608 3.58266 3.68675 3.75822 3.79098 3.82122 3.92190 3.92949 4.10734 4.19356 4.20377 4.25611 4.26768 4.33694 4.42693 4.48612 4.55461 4.60138 4.60475 4.66325 4.74520 4.80220 4.81050 4.87654 4.96375 4.98977 5.04289 5.11164 5.16451 5.23498 5.28439 5.39639 5.49889 5.74009 6.36235 6.37927 6.62386 6.72397 7.02472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.362 6.362 3 C 0.462 3.538 4 O -0.542 6.542 5 C -0.100 4.100 6 C -0.124 4.124 7 C 0.152 3.848 8 C -0.130 4.130 9 C -0.106 4.106 10 C -0.126 4.126 11 C 0.082 3.918 12 N -0.601 5.601 13 C 0.515 3.485 14 O -0.556 6.556 15 C 0.032 3.968 16 O -0.294 6.294 17 C 0.192 3.808 18 C -0.105 4.105 19 N 0.035 4.965 20 O -0.198 6.198 21 O -0.183 6.183 22 C -0.004 4.004 23 C -0.149 4.149 24 C -0.084 4.084 25 O -0.558 6.558 26 Si 0.801 3.199 27 C -0.002 4.002 28 C -0.188 4.188 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.165 0.835 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.101 0.899 36 H 0.063 0.937 37 H 0.104 0.896 38 H 0.099 0.901 39 H 0.080 0.920 40 H 0.112 0.888 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.109 0.891 47 H 0.398 0.602 48 H -0.306 1.306 49 H -0.262 1.262 50 H 0.192 0.808 51 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.398 -1.459 -2.979 20.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.278 6.278 3 C 0.307 3.693 4 O -0.431 6.431 5 C -0.119 4.119 6 C -0.163 4.163 7 C 0.066 3.934 8 C -0.168 4.168 9 C -0.143 4.143 10 C -0.164 4.164 11 C -0.038 4.038 12 N -0.335 5.335 13 C 0.303 3.697 14 O -0.433 6.433 15 C -0.045 4.045 16 O -0.204 6.204 17 C 0.142 3.858 18 C -0.190 4.190 19 N 0.544 4.456 20 O -0.407 6.407 21 O -0.394 6.394 22 C -0.023 4.023 23 C -0.151 4.151 24 C -0.192 4.192 25 O -0.366 6.366 26 Si 0.704 3.296 27 C -0.020 4.020 28 C -0.206 4.206 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.153 0.847 32 H 0.183 0.817 33 H 0.079 0.921 34 H 0.129 0.871 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.123 0.877 38 H 0.118 0.882 39 H 0.099 0.901 40 H 0.131 0.869 41 H 0.124 0.876 42 H 0.113 0.887 43 H 0.158 0.842 44 H 0.160 0.840 45 H 0.167 0.833 46 H 0.127 0.873 47 H 0.248 0.752 48 H -0.234 1.234 49 H -0.188 1.188 50 H 0.208 0.792 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 20.317 -1.374 -1.879 20.450 hybrid contribution -2.796 -0.178 0.349 2.823 sum 17.521 -1.552 -1.530 17.656 Atomic orbital electron populations 1.23501 0.75367 1.05679 1.02029 1.86493 1.24536 1.33061 1.83734 1.24302 0.93168 0.80933 0.70933 1.90688 1.68121 1.37837 1.46495 1.22584 0.85259 1.01475 1.02631 1.23255 0.97932 1.00980 0.94125 1.22046 0.95489 0.88961 0.86862 1.23292 0.97858 0.94603 1.01046 1.22536 0.89424 1.03722 0.98663 1.22846 0.99485 0.96677 0.97373 1.22925 0.76371 1.00426 1.04082 1.48301 1.08715 1.44902 1.31561 1.20219 0.85693 0.81194 0.82546 1.90878 1.17848 1.63129 1.71468 1.23076 0.88081 0.99440 0.93917 1.86481 1.35597 1.56425 1.41860 1.19013 0.93145 0.87578 0.86040 1.20888 0.78391 1.12427 1.07341 1.43940 1.04140 0.98496 0.99004 1.94491 1.41061 1.55732 1.49445 1.94702 1.90265 1.31275 1.23197 1.20850 0.99679 0.90297 0.91447 1.20483 0.91198 1.02285 1.01089 1.25518 1.13205 0.83730 0.96716 1.86531 1.69980 1.32432 1.47703 0.93779 0.70307 0.79098 0.86374 1.21738 1.00749 0.89842 0.89640 1.21808 0.92843 1.03287 1.02671 0.93214 0.91931 0.84714 0.81736 0.92137 0.87107 0.88086 0.91796 0.87721 0.88222 0.90131 0.86935 0.87592 0.88720 0.84168 0.84040 0.83250 0.87312 0.75184 1.23392 1.18751 0.79187 0.77694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 10.56 113.37 1.20 1.36 16 2 O -0.36 -3.39 10.57 -51.46 -0.54 -3.93 16 3 C 0.46 5.62 7.48 71.24 0.53 6.15 16 4 O -0.54 -11.45 15.65 21.98 0.34 -11.10 16 5 C -0.10 -0.27 4.06 -10.94 -0.04 -0.31 16 6 C -0.12 -0.24 6.68 31.00 0.21 -0.03 16 7 C 0.15 -0.43 1.34 4.02 0.01 -0.42 16 8 C -0.13 -0.48 6.54 30.94 0.20 -0.27 16 9 C -0.11 1.25 6.08 31.63 0.19 1.45 16 10 C -0.13 1.93 7.09 32.06 0.23 2.16 16 11 C 0.08 -1.18 6.71 86.84 0.58 -0.60 16 12 N -0.60 2.12 3.17 -766.33 -2.43 -0.31 16 13 C 0.52 2.17 7.59 87.66 0.67 2.83 16 14 O -0.56 -10.14 13.69 16.00 0.22 -9.92 16 15 C 0.03 -0.15 4.24 71.24 0.30 0.15 16 16 O -0.29 -1.98 7.68 -63.45 -0.49 -2.47 16 17 C 0.19 0.37 6.67 22.51 0.15 0.52 16 18 C -0.11 -0.89 6.87 36.47 0.25 -0.64 16 19 N 0.03 0.66 4.45 -46.24 -0.21 0.45 16 20 O -0.20 -4.08 18.45 18.89 0.35 -3.73 16 21 O -0.18 -4.53 17.24 25.61 0.44 -4.09 16 22 C 0.00 -0.01 9.11 22.26 0.20 0.19 16 23 C -0.15 0.79 5.39 -19.85 -0.11 0.68 16 24 C -0.08 0.50 2.82 71.23 0.20 0.70 16 25 O -0.56 1.80 12.77 -148.98 -1.90 -0.10 16 26 Si 0.80 -8.40 29.78 68.60 2.04 -6.35 16 27 C 0.00 0.03 8.66 22.25 0.19 0.22 16 28 C -0.19 1.93 9.04 22.36 0.20 2.13 16 29 H 0.05 0.44 8.13 -2.39 -0.02 0.42 16 30 H 0.06 0.36 8.13 -2.39 -0.02 0.35 16 31 H 0.13 -0.19 8.14 -2.38 -0.02 -0.21 16 32 H 0.17 -0.90 8.14 -2.39 -0.02 -0.92 16 33 H 0.06 0.70 6.50 -2.39 -0.02 0.68 16 34 H 0.11 -0.42 8.01 -2.39 -0.02 -0.44 16 35 H 0.10 -0.12 8.01 -2.38 -0.02 -0.14 16 36 H 0.06 0.94 6.03 -2.38 -0.01 0.93 16 37 H 0.10 -1.46 7.85 -2.39 -0.02 -1.48 16 38 H 0.10 -1.35 8.01 -2.39 -0.02 -1.37 16 39 H 0.08 -1.17 8.14 -2.39 -0.02 -1.19 16 40 H 0.11 -2.12 8.14 -2.39 -0.02 -2.14 16 41 H 0.11 -2.07 7.50 -2.39 -0.02 -2.09 16 42 H 0.09 -1.61 8.14 -2.39 -0.02 -1.63 16 43 H 0.14 -1.93 7.38 -2.38 -0.02 -1.95 16 44 H 0.14 -1.93 7.66 -2.39 -0.02 -1.95 16 45 H 0.15 0.74 7.61 -2.91 -0.02 0.72 16 46 H 0.11 -0.43 7.96 -2.39 -0.02 -0.45 16 47 H 0.40 -4.74 8.70 -74.06 -0.64 -5.39 16 48 H -0.31 0.19 7.11 99.48 0.71 0.90 16 49 H -0.26 2.29 7.11 99.48 0.71 3.00 16 50 H 0.19 -3.77 4.88 -2.91 -0.01 -3.78 16 51 H 0.21 -4.21 6.30 -2.91 -0.02 -4.23 16 Total: 0.00 -51.05 423.96 3.39 -47.65 By element: Atomic # 1 Polarization: -22.77 SS G_CDS: 0.40 Total: -22.37 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: 5.16 Total: 16.28 kcal Atomic # 7 Polarization: 2.78 SS G_CDS: -2.63 Total: 0.14 kcal Atomic # 8 Polarization: -33.77 SS G_CDS: -1.58 Total: -35.35 kcal Atomic # 14 Polarization: -8.40 SS G_CDS: 2.04 Total: -6.35 kcal Total: -51.05 3.39 -47.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15736542_4549638.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.364 kcal (2) G-P(sol) polarization free energy of solvation -51.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds