Wall clock time and date at job start Tue Mar 9 2021 13:08:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86297 * 109.46818 * 2 1 4 4 C 1.50699 * 109.47486 * 120.00014 * 2 1 3 5 5 C 1.34455 * 126.47885 * 255.02377 * 4 2 1 6 6 N 1.36568 * 109.97843 * 179.97438 * 5 4 2 7 7 C 1.37822 * 109.86251 * 0.02562 * 6 5 4 8 8 C 1.38655 * 133.37724 * 179.71261 * 7 6 5 9 9 C 1.39321 * 119.66485 * 179.83774 * 8 7 6 10 10 C 1.47576 * 119.82898 * 180.21810 * 9 8 7 11 11 O 1.21591 * 120.00502 * 0.25249 * 10 9 8 12 12 N 1.34786 * 119.99678 * 180.26167 * 10 9 8 13 13 C 1.46493 * 119.99784 * 179.97438 * 12 10 9 14 14 H 1.09002 * 112.85430 * 336.19346 * 13 12 10 15 15 C 1.53779 * 113.61840 * 107.50001 * 13 12 10 16 16 C 1.53774 * 87.08498 * 139.97784 * 15 13 12 17 17 H 1.09000 * 113.69191 * 89.12595 * 16 15 13 18 18 C 1.53001 * 113.61579 * 220.02208 * 16 15 13 19 19 F 1.39896 * 109.46929 * 277.49296 * 18 16 15 20 20 C 1.53782 * 113.61433 * 204.99947 * 13 12 10 21 21 C 1.40197 * 120.33367 * 0.47262 * 9 8 7 22 22 C 1.36228 * 120.38080 * 359.76611 * 21 9 8 23 23 C 1.39878 * 119.96362 * 359.97438 * 22 21 9 24 24 H 0.96697 * 113.99631 * 299.99114 * 1 2 3 25 25 H 1.09001 * 109.46745 * 240.00307 * 2 1 3 26 26 H 1.48506 * 110.00224 * 178.68649 * 3 2 1 27 27 H 1.48504 * 110.00087 * 300.00069 * 3 2 1 28 28 H 1.07999 * 125.01026 * 359.93528 * 5 4 2 29 29 H 0.97002 * 125.06445 * 179.97438 * 6 5 4 30 30 H 1.07996 * 120.16494 * 0.31046 * 8 7 6 31 31 H 0.96993 * 119.99637 * 359.97438 * 12 10 9 32 32 H 1.08995 * 113.61468 * 254.53062 * 15 13 12 33 33 H 1.09005 * 113.61432 * 25.42834 * 15 13 12 34 34 H 1.08990 * 109.47446 * 37.49599 * 18 16 15 35 35 H 1.09005 * 109.47080 * 157.50061 * 18 16 15 36 36 H 1.09007 * 113.61064 * 334.56396 * 20 13 12 37 37 H 1.08999 * 113.62043 * 105.46604 * 20 13 12 38 38 H 1.08001 * 119.81037 * 179.78200 * 21 9 8 39 39 H 1.08006 * 120.02065 * 180.02562 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9314 -0.7104 1.2304 5 6 2.4613 -0.1362 2.3246 6 7 2.8029 -1.0946 3.2356 7 6 2.4948 -2.3430 2.7396 8 6 2.6359 -3.6282 3.2406 9 6 2.2142 -4.7155 2.4784 10 6 2.3582 -6.0846 3.0101 11 8 2.8396 -6.2612 4.1126 12 7 1.9563 -7.1394 2.2735 13 6 2.0997 -8.4984 2.8011 14 1 2.8789 -8.5783 3.5591 15 6 0.7662 -9.1424 3.2157 16 6 1.2986 -10.4502 2.6068 17 1 1.8580 -11.0655 3.3115 18 6 0.2409 -11.2424 1.8357 19 9 -0.5176 -12.0028 2.7321 20 6 2.1905 -9.5769 1.7086 21 6 1.6587 -4.5160 1.2068 22 6 1.5209 -3.2570 0.7049 23 6 1.9346 -2.1547 1.4602 24 1 -0.3932 0.4416 0.7651 25 1 1.7923 -0.5138 -0.8900 26 1 3.5346 1.7704 0.0320 27 1 1.5613 2.4679 -1.2085 28 1 2.5974 0.9263 2.4625 29 1 3.2033 -0.9224 4.1021 30 1 3.0634 -3.7850 4.2198 31 1 1.5720 -6.9984 1.3941 32 1 0.6214 -9.1903 4.2949 33 1 -0.0974 -8.7355 2.6895 34 1 -0.4121 -10.5524 1.3015 35 1 0.7315 -11.9046 1.1222 36 1 1.7163 -9.2889 0.7703 37 1 3.1955 -9.9758 1.5711 38 1 1.3378 -5.3652 0.6217 39 1 1.0918 -3.1100 -0.2752 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12335838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:54 Heat of formation + Delta-G solvation = -35.044976 kcal Electronic energy + Delta-G solvation = -23835.750354 eV Core-core repulsion = 20046.243711 eV Total energy + Delta-G solvation = -3789.506643 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.53997 -42.46051 -41.23898 -39.53996 -37.85399 -37.43186 -34.80953 -33.24217 -30.84434 -30.71335 -29.16716 -26.75008 -26.48014 -25.19306 -23.65422 -23.07926 -21.57304 -20.89444 -20.62749 -19.36580 -18.30192 -17.89633 -17.38855 -16.97190 -16.94933 -16.76015 -16.30039 -16.11161 -15.98681 -15.70255 -15.50837 -15.16164 -15.09742 -14.77552 -14.75029 -14.31793 -14.01134 -13.62952 -13.47104 -13.12885 -12.85460 -12.65851 -12.50994 -12.28254 -12.27404 -12.01327 -11.92544 -11.51923 -11.29916 -11.05690 -10.78885 -10.28968 -10.14236 -9.36871 -8.79045 -4.96541 -0.33487 0.36343 1.38993 1.42022 1.71894 1.88568 1.91993 2.06177 2.26648 2.85040 3.35409 3.41225 3.56698 3.62559 3.66256 3.74000 3.77615 3.89685 3.92719 4.10566 4.11965 4.22154 4.26537 4.31054 4.49356 4.52451 4.58467 4.60944 4.68918 4.76161 4.78552 4.82211 4.95602 4.98536 5.03753 5.19954 5.24164 5.40531 5.47002 5.55314 5.61521 5.97720 6.45383 6.54425 6.91025 7.11828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.561 6.561 2 C -0.039 4.039 3 Si 0.794 3.206 4 C -0.235 4.235 5 C 0.096 3.904 6 N -0.578 5.578 7 C 0.066 3.934 8 C -0.067 4.067 9 C -0.138 4.138 10 C 0.561 3.439 11 O -0.585 6.585 12 N -0.700 5.700 13 C 0.115 3.885 14 H 0.096 0.904 15 C -0.148 4.148 16 C -0.140 4.140 17 H 0.099 0.901 18 C 0.066 3.934 19 F -0.241 7.241 20 C -0.119 4.119 21 C -0.107 4.107 22 C -0.086 4.086 23 C -0.082 4.082 24 H 0.393 0.607 25 H 0.097 0.903 26 H -0.285 1.285 27 H -0.306 1.306 28 H 0.219 0.781 29 H 0.435 0.565 30 H 0.127 0.873 31 H 0.416 0.584 32 H 0.058 0.942 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.115 0.885 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.206 4.320 -2.321 4.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.148 4.148 3 Si 0.700 3.300 4 C -0.242 4.242 5 C -0.033 4.033 6 N -0.181 5.181 7 C -0.041 4.041 8 C -0.089 4.089 9 C -0.143 4.143 10 C 0.350 3.650 11 O -0.466 6.466 12 N -0.352 5.352 13 C 0.010 3.990 14 H 0.114 0.886 15 C -0.187 4.187 16 C -0.160 4.160 17 H 0.117 0.883 18 C 0.012 3.988 19 F -0.222 7.222 20 C -0.157 4.157 21 C -0.126 4.126 22 C -0.105 4.105 23 C -0.087 4.087 24 H 0.243 0.757 25 H 0.114 0.886 26 H -0.212 1.212 27 H -0.234 1.234 28 H 0.235 0.765 29 H 0.275 0.725 30 H 0.145 0.855 31 H 0.255 0.745 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.133 0.867 37 H 0.107 0.893 38 H 0.171 0.829 39 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.736 4.467 -2.367 5.109 hybrid contribution 0.149 -0.710 0.132 0.737 sum 0.885 3.757 -2.235 4.460 Atomic orbital electron populations 1.86461 1.17874 1.82312 1.50257 1.24535 0.84619 1.10162 0.95524 0.94051 0.77092 0.73633 0.85269 1.20857 1.12563 0.91495 0.99309 1.22370 0.97149 0.95791 0.87992 1.41826 1.54108 1.03260 1.18886 1.18120 1.03887 0.86870 0.95236 1.20147 0.99779 0.88897 1.00056 1.19472 1.06253 0.91761 0.96796 1.18447 0.76710 0.85591 0.84234 1.90761 1.46887 1.86839 1.22125 1.45778 1.63009 1.05238 1.21152 1.22532 0.98389 0.79851 0.98239 0.88625 1.23571 0.98053 0.95562 1.01484 1.22941 0.97832 0.95604 0.99597 0.88282 1.22231 0.92237 0.94303 0.90049 1.92736 1.78775 1.78810 1.71881 1.23285 1.01307 0.93465 0.97650 1.20896 0.99589 0.98128 0.93996 1.20408 0.99176 0.90761 1.00137 1.19593 1.00924 0.94351 0.93863 0.75718 0.88577 1.21213 1.23407 0.76455 0.72489 0.85461 0.74509 0.92311 0.88315 0.88893 0.88718 0.86693 0.89305 0.82929 0.84457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.22 12.88 -148.98 -1.92 -1.69 16 2 C -0.04 0.06 3.06 71.24 0.22 0.28 16 3 Si 0.79 -4.09 30.75 68.60 2.11 -1.98 16 4 C -0.23 0.19 5.57 -18.65 -0.10 0.09 16 5 C 0.10 -0.57 10.43 83.09 0.87 0.30 16 6 N -0.58 2.07 6.07 -187.71 -1.14 0.93 16 7 C 0.07 0.21 7.26 38.96 0.28 0.49 16 8 C -0.07 -0.39 9.61 22.63 0.22 -0.17 16 9 C -0.14 -0.70 5.87 -20.08 -0.12 -0.82 16 10 C 0.56 4.12 7.76 86.71 0.67 4.80 16 11 O -0.58 -9.19 15.91 -4.00 -0.06 -9.25 16 12 N -0.70 0.06 5.30 -443.16 -2.35 -2.29 16 13 C 0.11 -0.02 4.24 45.52 0.19 0.18 16 14 H 0.10 0.47 7.46 -2.39 -0.02 0.45 16 15 C -0.15 0.09 7.43 31.12 0.23 0.33 16 16 C -0.14 0.48 4.10 -10.27 -0.04 0.44 16 17 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 18 C 0.07 -0.25 7.35 71.98 0.53 0.28 16 19 F -0.24 -1.22 17.36 44.97 0.78 -0.44 16 20 C -0.12 0.77 7.39 31.12 0.23 1.00 16 21 C -0.11 -0.05 9.46 22.28 0.21 0.16 16 22 C -0.09 -0.19 10.03 22.20 0.22 0.03 16 23 C -0.08 -0.30 6.35 -20.14 -0.13 -0.42 16 24 H 0.39 -3.40 8.70 -74.06 -0.64 -4.05 16 25 H 0.10 0.07 7.96 -2.39 -0.02 0.05 16 26 H -0.29 0.08 7.11 99.48 0.71 0.78 16 27 H -0.31 -1.07 7.11 99.48 0.71 -0.36 16 28 H 0.22 -3.26 6.35 -2.91 -0.02 -3.28 16 29 H 0.43 -3.97 8.96 -92.71 -0.83 -4.81 16 30 H 0.13 0.82 7.62 -2.91 -0.02 0.80 16 31 H 0.42 -2.73 6.72 -92.71 -0.62 -3.35 16 32 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.10 -0.27 7.96 -2.38 -0.02 -0.29 16 34 H 0.09 -0.68 7.94 -2.39 -0.02 -0.69 16 35 H 0.09 -0.68 8.14 -2.38 -0.02 -0.70 16 36 H 0.11 -1.25 8.08 -2.38 -0.02 -1.27 16 37 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 38 H 0.15 -0.99 6.36 -2.91 -0.02 -1.01 16 39 H 0.14 -0.01 8.06 -2.91 -0.02 -0.03 16 Total: 0.00 -26.16 333.13 -0.04 -26.19 By element: Atomic # 1 Polarization: -17.48 SS G_CDS: -0.94 Total: -18.42 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 3.48 Total: 6.95 kcal Atomic # 7 Polarization: 2.13 SS G_CDS: -3.49 Total: -1.35 kcal Atomic # 8 Polarization: -8.96 SS G_CDS: -1.98 Total: -10.94 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.78 Total: -0.44 kcal Atomic # 14 Polarization: -4.09 SS G_CDS: 2.11 Total: -1.98 kcal Total: -26.16 -0.04 -26.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12335838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.851 kcal (2) G-P(sol) polarization free energy of solvation -26.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds