Wall clock time and date at job start Tue Mar 9 2021 13:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.34845 * 125.90062 * 2 1 4 4 C 1.40941 * 107.46731 * 179.80475 * 3 2 1 5 5 C 1.50701 * 126.26843 * 180.28003 * 4 3 2 6 6 O 1.42895 * 109.47401 * 255.11629 * 5 4 3 7 7 Si 1.86299 * 109.46931 * 15.12045 * 5 4 3 8 8 C 1.34852 * 107.46587 * 0.38508 * 4 3 2 9 9 C 1.50703 * 125.90041 * 179.88517 * 8 4 3 10 10 N 1.36562 * 108.20197 * 359.61829 * 8 4 3 11 11 C 1.40228 * 125.67236 * 180.22692 * 10 8 4 12 12 C 1.38546 * 119.99032 * 244.72898 * 11 10 8 13 13 C 1.39505 * 119.78235 * 179.72722 * 12 11 10 14 14 C 1.47857 * 120.11547 * 180.26626 * 13 12 11 15 15 O 1.21549 * 119.99992 * 0.29527 * 14 13 12 16 16 N 1.34774 * 120.00444 * 180.29246 * 14 13 12 17 17 C 1.46497 * 120.00548 * 180.02562 * 16 14 13 18 18 H 1.09007 * 112.84687 * 336.19153 * 17 16 14 19 19 C 1.53779 * 113.62031 * 107.50061 * 17 16 14 20 20 C 1.53780 * 87.08376 * 139.98081 * 19 17 16 21 21 H 1.09005 * 113.61223 * 89.11376 * 20 19 17 22 22 C 1.52996 * 113.61806 * 220.02218 * 20 19 17 23 23 F 1.39901 * 109.46603 * 277.49806 * 22 20 19 24 24 C 1.53781 * 113.61490 * 205.00485 * 17 16 14 25 25 C 1.39573 * 119.77339 * 0.56129 * 13 12 11 26 26 C 1.38021 * 119.98632 * 359.70799 * 25 13 12 27 27 C 1.38224 * 120.21555 * 359.97438 * 26 25 13 28 28 H 1.08993 * 109.46782 * 269.95356 * 1 2 3 29 29 H 1.08999 * 109.46612 * 29.95820 * 1 2 3 30 30 H 1.08997 * 109.46933 * 149.95349 * 1 2 3 31 31 H 1.07995 * 126.26837 * 0.06410 * 3 2 1 32 32 H 1.09005 * 109.46792 * 135.11620 * 5 4 3 33 33 H 0.96707 * 113.99675 * 60.00235 * 6 5 4 34 34 H 1.48501 * 109.99743 * 179.97438 * 7 5 4 35 35 H 1.48492 * 109.99837 * 301.31610 * 7 5 4 36 36 H 1.09002 * 109.47152 * 269.68684 * 9 8 4 37 37 H 1.09001 * 109.46980 * 149.68785 * 9 8 4 38 38 H 1.09004 * 109.47113 * 29.68766 * 9 8 4 39 39 H 1.08000 * 120.11344 * 359.96928 * 12 11 10 40 40 H 0.97010 * 119.99873 * 359.97438 * 16 14 13 41 41 H 1.08996 * 113.61350 * 254.53181 * 19 17 16 42 42 H 1.09000 * 113.60902 * 25.43292 * 19 17 16 43 43 H 1.09001 * 109.47256 * 37.49432 * 22 20 19 44 44 H 1.08992 * 109.47200 * 157.50056 * 22 20 19 45 45 H 1.09003 * 113.61262 * 334.55942 * 24 17 16 46 46 H 1.08991 * 113.61824 * 105.46761 * 24 17 16 47 47 H 1.08005 * 120.01188 * 179.72959 * 25 13 12 48 48 H 1.08002 * 119.89216 * 180.02562 * 26 25 13 49 49 H 1.07996 * 119.88649 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2978 1.0923 0.0000 4 6 3.6349 0.6466 0.0046 5 6 4.8648 1.5174 0.0122 6 8 5.4591 1.5137 -1.2873 7 14 4.3898 3.2589 0.4729 8 6 3.6121 -0.7017 -0.0014 9 6 4.8178 -1.6058 -0.0019 10 7 2.3078 -1.1063 -0.0009 11 6 1.8643 -2.4366 -0.0016 12 6 1.1587 -2.9308 -1.0867 13 6 0.7245 -4.2566 -1.0852 14 6 -0.0240 -4.7934 -2.2419 15 8 -0.2574 -4.0807 -3.1985 16 7 -0.4475 -6.0728 -2.2356 17 6 -1.1887 -6.6048 -3.3818 18 1 -1.6864 -5.8275 -3.9617 19 6 -0.3752 -7.5894 -4.2383 20 6 -1.6600 -8.4260 -4.3565 21 1 -2.2862 -8.1472 -5.2040 22 6 -1.4201 -9.9342 -4.2638 23 9 -1.0231 -10.4208 -5.5139 24 6 -2.1027 -7.7899 -3.0281 25 6 0.9938 -5.0729 0.0144 26 6 1.6926 -4.5692 1.0928 27 6 2.1283 -3.2574 1.0880 28 1 -0.3632 -0.0008 1.0276 29 1 -0.3632 0.8904 -0.5132 30 1 -0.3633 -0.8895 -0.5145 31 1 1.9671 2.1204 0.0010 32 1 5.5789 1.1311 0.7395 33 1 4.8789 1.8456 -1.9861 34 1 5.5941 4.1276 0.4846 35 1 3.3924 3.7857 -0.4929 36 1 5.1081 -1.8238 -1.0297 37 1 4.5747 -2.5359 0.5119 38 1 5.6426 -1.1118 0.5116 39 1 0.9488 -2.2930 -1.9325 40 1 -0.2609 -6.6417 -1.4723 41 1 -0.0391 -7.1690 -5.1862 42 1 0.4227 -8.0896 -3.6894 43 1 -0.6378 -10.1334 -3.5313 44 1 -2.3406 -10.4303 -3.9564 45 1 -1.7771 -8.3450 -2.1483 46 1 -3.1611 -7.5315 -2.9991 47 1 0.6556 -6.0986 0.0215 48 1 1.9005 -5.2023 1.9427 49 1 2.6751 -2.8689 1.9344 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12335854.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:08:59 Heat of formation + Delta-G solvation = -14.291811 kcal Electronic energy + Delta-G solvation = -31416.519639 eV Core-core repulsion = 27033.073923 eV Total energy + Delta-G solvation = -4383.445716 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -48.54508 -42.92644 -41.53431 -40.08818 -39.03727 -37.83650 -35.15961 -34.14211 -33.75713 -32.34768 -30.56752 -30.17638 -29.30064 -27.25112 -26.76897 -25.62145 -24.77683 -23.71480 -23.22271 -21.92794 -21.18269 -20.88335 -20.22107 -18.74949 -17.92382 -17.60769 -17.40240 -17.28035 -17.06519 -16.77904 -16.75292 -16.19687 -16.09970 -15.84424 -15.69475 -15.51994 -15.20100 -15.03653 -14.78182 -14.66176 -14.36347 -14.15054 -14.06989 -13.79739 -13.52582 -13.48299 -13.47806 -13.30282 -13.21184 -13.01016 -12.86209 -12.67827 -12.54289 -12.45102 -12.18728 -12.03634 -11.71551 -11.53292 -11.34627 -11.13145 -10.52916 -10.43198 -10.32208 -10.08173 -9.54523 -8.86816 -4.85985 -0.45140 -0.06132 1.06316 1.41768 1.60348 1.63302 1.71686 1.76460 1.99237 2.04090 2.56240 3.33512 3.38120 3.44431 3.54724 3.63508 3.65559 3.66968 3.73470 3.88274 3.92000 3.95435 4.08877 4.10352 4.18635 4.21599 4.26304 4.31047 4.38491 4.44085 4.56589 4.58187 4.61681 4.66322 4.67169 4.69487 4.73299 4.76650 4.78596 4.94985 4.97401 4.98111 5.00316 5.02794 5.05865 5.13170 5.15586 5.20084 5.33017 5.46576 5.55035 5.95082 6.11852 6.37051 6.44087 6.54600 7.03522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.014 3.986 3 C -0.199 4.199 4 C -0.202 4.202 5 C -0.046 4.046 6 O -0.552 6.552 7 Si 0.775 3.225 8 C 0.040 3.960 9 C -0.082 4.082 10 N -0.405 5.405 11 C 0.097 3.903 12 C -0.069 4.069 13 C -0.134 4.134 14 C 0.557 3.443 15 O -0.583 6.583 16 N -0.695 5.695 17 C 0.114 3.886 18 H 0.093 0.907 19 C -0.149 4.149 20 C -0.142 4.142 21 H 0.096 0.904 22 C 0.066 3.934 23 F -0.242 7.242 24 C -0.116 4.116 25 C -0.064 4.064 26 C -0.099 4.099 27 C -0.083 4.083 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.150 0.850 32 H 0.118 0.882 33 H 0.381 0.619 34 H -0.304 1.304 35 H -0.291 1.291 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.090 0.910 39 H 0.112 0.888 40 H 0.419 0.581 41 H 0.055 0.945 42 H 0.102 0.898 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.171 0.829 48 H 0.178 0.822 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -7.102 9.308 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.223 4.223 4 C -0.208 4.208 5 C -0.156 4.156 6 O -0.360 6.360 7 Si 0.682 3.318 8 C -0.069 4.069 9 C -0.139 4.139 10 N -0.080 5.080 11 C 0.008 3.992 12 C -0.089 4.089 13 C -0.138 4.138 14 C 0.345 3.655 15 O -0.464 6.464 16 N -0.347 5.347 17 C 0.009 3.991 18 H 0.111 0.889 19 C -0.187 4.187 20 C -0.162 4.162 21 H 0.114 0.886 22 C 0.012 3.988 23 F -0.223 7.223 24 C -0.154 4.154 25 C -0.082 4.082 26 C -0.117 4.117 27 C -0.103 4.103 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.074 0.926 31 H 0.168 0.832 32 H 0.136 0.864 33 H 0.230 0.770 34 H -0.232 1.232 35 H -0.217 1.217 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.130 0.870 40 H 0.258 0.742 41 H 0.074 0.926 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.138 0.862 46 H 0.107 0.893 47 H 0.189 0.811 48 H 0.195 0.805 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -2.885 -6.355 8.695 11.150 hybrid contribution 0.085 0.098 -1.728 1.733 sum -2.801 -6.258 6.967 9.775 Atomic orbital electron populations 1.20391 0.86896 1.03350 1.03553 1.20747 0.94350 0.85092 1.09190 1.20790 0.92081 0.98161 1.11225 1.19682 0.94991 0.92833 1.13289 1.24477 0.94522 1.09372 0.87182 1.86532 1.44568 1.87118 1.17763 0.93892 0.76928 0.71980 0.89037 1.20580 0.84364 0.94411 1.07595 1.20357 0.93061 0.97842 1.02642 1.41503 1.05643 1.03298 1.57582 1.17681 1.01883 0.83786 0.95853 1.21102 0.96148 0.95150 0.96545 1.19739 1.03395 0.94379 0.96278 1.18530 0.78441 0.82410 0.86134 1.90794 1.58579 1.59666 1.37368 1.45733 1.56003 1.11189 1.21775 1.22540 0.93891 0.94807 0.87827 0.88879 1.23584 0.97610 0.97176 1.00362 1.22949 0.98522 0.94417 1.00283 0.88568 1.22245 1.02753 0.92917 0.80920 1.92739 1.93099 1.89648 1.46841 1.23280 1.00544 0.94174 0.97416 1.21806 0.94930 1.00590 0.90914 1.21484 0.96278 0.94324 0.99580 1.21688 0.98013 0.94498 0.96051 0.89635 0.89183 0.92611 0.83223 0.86433 0.77040 1.23194 1.21744 0.91873 0.90647 0.89081 0.87039 0.74165 0.92648 0.87975 0.88635 0.88688 0.86221 0.89310 0.81136 0.80456 0.83484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.13 10.08 71.24 0.72 0.59 16 2 C 0.01 0.08 6.80 41.04 0.28 0.36 16 3 C -0.20 -1.04 9.27 22.15 0.21 -0.84 16 4 C -0.20 -1.08 5.35 -19.98 -0.11 -1.19 16 5 C -0.05 -0.17 2.60 71.24 0.19 0.02 16 6 O -0.55 -3.85 12.88 -148.98 -1.92 -5.77 16 7 Si 0.78 1.62 30.87 68.60 2.12 3.74 16 8 C 0.04 0.22 6.81 41.05 0.28 0.50 16 9 C -0.08 -0.13 9.87 71.24 0.70 0.57 16 10 N -0.41 -2.10 2.79 -320.36 -0.89 -2.99 16 11 C 0.10 0.23 5.02 38.04 0.19 0.42 16 12 C -0.07 -0.33 8.29 22.65 0.19 -0.14 16 13 C -0.13 -0.04 5.87 -20.10 -0.12 -0.16 16 14 C 0.56 2.24 7.77 86.79 0.67 2.92 16 15 O -0.58 -8.38 15.94 -3.87 -0.06 -8.44 16 16 N -0.70 2.89 5.30 -442.90 -2.35 0.54 16 17 C 0.11 -0.32 4.24 45.52 0.19 -0.13 16 18 H 0.09 0.28 7.46 -2.38 -0.02 0.27 16 19 C -0.15 0.42 7.43 31.12 0.23 0.65 16 20 C -0.14 0.76 4.10 -10.27 -0.04 0.72 16 21 H 0.10 -0.30 8.14 -2.38 -0.02 -0.32 16 22 C 0.07 -0.38 7.35 71.98 0.53 0.15 16 23 F -0.24 -0.90 17.36 44.97 0.78 -0.12 16 24 C -0.12 1.07 7.39 31.12 0.23 1.30 16 25 C -0.06 0.52 9.54 22.54 0.21 0.74 16 26 C -0.10 0.89 10.02 22.21 0.22 1.12 16 27 C -0.08 0.32 8.76 22.44 0.20 0.52 16 28 H 0.09 -0.10 8.14 -2.39 -0.02 -0.12 16 29 H 0.09 -0.03 8.14 -2.39 -0.02 -0.05 16 30 H 0.05 0.18 6.83 -2.39 -0.02 0.16 16 31 H 0.15 0.42 6.52 -2.91 -0.02 0.40 16 32 H 0.12 0.15 7.50 -2.38 -0.02 0.13 16 33 H 0.38 1.06 8.70 -74.05 -0.64 0.42 16 34 H -0.30 -2.68 7.11 99.48 0.71 -1.97 16 35 H -0.29 -1.94 7.01 99.48 0.70 -1.24 16 36 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.07 -0.11 6.84 -2.39 -0.02 -0.13 16 38 H 0.09 -0.02 7.49 -2.38 -0.02 -0.03 16 39 H 0.11 1.16 7.65 -2.91 -0.02 1.13 16 40 H 0.42 -5.10 6.76 -92.70 -0.63 -5.73 16 41 H 0.05 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.10 -0.57 7.96 -2.39 -0.02 -0.59 16 43 H 0.10 -0.93 7.94 -2.39 -0.02 -0.95 16 44 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 45 H 0.12 -1.74 8.08 -2.39 -0.02 -1.76 16 46 H 0.09 -0.83 8.14 -2.39 -0.02 -0.85 16 47 H 0.17 -2.78 6.40 -2.91 -0.02 -2.79 16 48 H 0.18 -2.81 8.06 -2.91 -0.02 -2.83 16 49 H 0.15 -0.88 8.06 -2.91 -0.02 -0.90 16 Total: 0.00 -25.68 405.09 2.40 -23.28 By element: Atomic # 1 Polarization: -18.10 SS G_CDS: -0.25 Total: -18.36 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: 4.98 Total: 8.11 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -3.24 Total: -2.45 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -1.98 Total: -14.21 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.78 Total: -0.12 kcal Atomic # 14 Polarization: 1.62 SS G_CDS: 2.12 Total: 3.74 kcal Total: -25.68 2.40 -23.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12335854.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.991 kcal (2) G-P(sol) polarization free energy of solvation -25.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds