Wall clock time and date at job start Tue Mar 9 2021 13:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.34804 * 125.90520 * 2 1 4 4 C 1.40989 * 107.48464 * 180.02562 * 3 2 1 5 5 C 1.50699 * 126.25748 * 179.97438 * 4 3 2 6 6 O 1.42902 * 109.47014 * 255.02360 * 5 4 3 7 7 Si 1.86305 * 109.47047 * 15.02079 * 5 4 3 8 8 C 1.34810 * 107.48879 * 359.73306 * 4 3 2 9 9 C 1.50693 * 125.90700 * 180.29753 * 8 4 3 10 10 N 1.36651 * 125.89874 * 180.02562 * 2 1 3 11 11 C 1.39672 * 125.68304 * 359.97438 * 10 2 1 12 12 C 1.40206 * 120.15506 * 270.04678 * 11 10 2 13 13 C 1.47573 * 120.18961 * 359.95792 * 12 11 10 14 14 O 1.21590 * 120.00327 * 359.97438 * 13 12 11 15 15 N 1.34784 * 119.99855 * 179.97438 * 13 12 11 16 16 C 1.46496 * 119.99793 * 179.97438 * 15 13 12 17 17 H 1.09003 * 112.85483 * 334.66327 * 16 15 13 18 18 C 1.53781 * 113.61452 * 105.86511 * 16 15 13 19 19 C 1.53959 * 87.01833 * 139.94721 * 18 16 15 20 20 H 1.09003 * 113.53604 * 89.19587 * 19 18 16 21 21 C 1.53007 * 113.74143 * 220.05277 * 19 18 16 22 22 F 1.39895 * 109.47344 * 277.60039 * 21 19 18 23 23 C 1.53779 * 87.11338 * 334.63882 * 19 18 16 24 24 C 1.39655 * 119.61551 * 179.97438 * 12 11 10 25 25 C 1.37830 * 119.91581 * 0.02562 * 24 12 11 26 26 C 1.38537 * 120.31279 * 359.71584 * 25 24 12 27 27 C 1.38068 * 120.38844 * 0.56282 * 26 25 24 28 28 H 1.09002 * 109.46848 * 269.97724 * 1 2 3 29 29 H 1.09000 * 109.46634 * 29.97158 * 1 2 3 30 30 H 1.08993 * 109.47065 * 149.97493 * 1 2 3 31 31 H 1.07996 * 126.25632 * 0.05573 * 3 2 1 32 32 H 1.09001 * 109.47682 * 135.02049 * 5 4 3 33 33 H 0.96696 * 114.00158 * 59.99669 * 6 5 4 34 34 H 1.48502 * 109.99632 * 58.68258 * 7 5 4 35 35 H 1.48499 * 109.99902 * 179.97438 * 7 5 4 36 36 H 1.09001 * 109.47514 * 270.15347 * 9 8 4 37 37 H 1.08999 * 109.47132 * 30.15476 * 9 8 4 38 38 H 1.09004 * 109.47384 * 150.14862 * 9 8 4 39 39 H 0.96996 * 119.99859 * 359.97438 * 15 13 12 40 40 H 1.08996 * 113.61770 * 254.52656 * 18 16 15 41 41 H 1.09005 * 113.61352 * 25.43372 * 18 16 15 42 42 H 1.08994 * 109.46716 * 37.60508 * 21 19 18 43 43 H 1.08999 * 109.46552 * 157.59737 * 21 19 18 44 44 H 1.08999 * 113.61000 * 270.81140 * 23 19 18 45 45 H 1.09002 * 113.68958 * 139.92037 * 23 19 18 46 46 H 1.07997 * 120.04012 * 180.02562 * 24 12 11 47 47 H 1.07999 * 119.84020 * 179.97438 * 25 24 12 48 48 H 1.07996 * 119.80525 * 180.30182 * 26 25 24 49 49 H 1.08002 * 119.96388 * 179.72398 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2976 1.0919 0.0000 4 6 3.6353 0.6464 -0.0006 5 6 4.8649 1.5177 -0.0014 6 8 5.4541 1.5088 -1.3032 7 14 4.3909 3.2610 0.4538 8 6 3.6134 -0.7015 0.0050 9 6 4.8194 -1.6050 0.0129 10 7 2.3083 -1.1069 -0.0005 11 6 1.8670 -2.4321 -0.0006 12 6 1.6440 -3.1003 1.2117 13 6 1.8751 -2.4077 2.4942 14 8 2.2604 -1.2545 2.5016 15 7 1.6589 -3.0535 3.6573 16 6 1.8889 -2.3662 4.9304 17 1 2.6133 -1.5558 4.8492 18 6 0.5940 -1.9646 5.6563 19 6 1.2903 -2.3874 6.9627 20 1 1.8501 -1.5818 7.4380 21 6 0.3732 -3.1290 7.9374 22 9 -0.3760 -2.2020 8.6699 23 6 2.1614 -3.3205 6.1052 24 6 1.2023 -4.4251 1.1985 25 6 0.9892 -5.0666 -0.0027 26 6 1.2054 -4.4016 -1.1986 27 6 1.6476 -3.0937 -1.2004 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3633 -0.8897 -0.5142 31 1 1.9668 2.1199 0.0008 32 1 5.5820 1.1348 0.7247 33 1 4.8711 1.8374 -2.0011 34 1 3.7480 3.2794 1.7923 35 1 5.5949 4.1302 0.4572 36 1 5.1153 -1.8250 -1.0128 37 1 5.6412 -1.1095 0.5298 38 1 4.5741 -2.5340 0.5276 39 1 1.3512 -3.9734 3.6514 40 1 0.3758 -0.8981 5.6021 41 1 -0.2628 -2.5867 5.3971 42 1 -0.2994 -3.7801 7.3793 43 1 0.9766 -3.7284 8.6192 44 1 1.7339 -4.3138 5.9690 45 1 3.2070 -3.3480 6.4119 46 1 1.0279 -4.9461 2.1282 47 1 0.6480 -6.0913 -0.0115 48 1 1.0312 -4.9107 -2.1350 49 1 1.8182 -2.5833 -2.1368 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12335856.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:03 Heat of formation + Delta-G solvation = -3.826539 kcal Electronic energy + Delta-G solvation = -33118.369038 eV Core-core repulsion = 28735.377130 eV Total energy + Delta-G solvation = -4382.991908 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 359.168 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.58441 -42.86457 -41.29920 -40.02361 -38.93670 -37.67072 -35.03066 -34.10543 -33.59248 -32.35212 -30.44256 -30.13594 -29.34106 -27.23175 -26.81858 -25.45648 -24.61453 -23.80820 -23.14911 -21.73158 -21.13577 -20.79947 -20.22355 -18.85455 -17.92883 -17.68271 -17.47107 -17.10543 -16.80535 -16.74045 -16.47340 -16.16100 -15.94059 -15.85402 -15.68409 -15.39512 -15.21180 -14.90274 -14.74941 -14.47335 -14.37087 -14.19045 -14.01096 -13.78262 -13.54629 -13.49512 -13.36896 -13.25169 -13.09361 -12.95239 -12.92670 -12.77219 -12.53207 -12.38095 -12.17490 -12.06173 -11.76668 -11.57752 -11.33876 -10.99449 -10.35356 -10.31177 -10.11694 -9.99940 -9.52351 -8.67791 -4.99186 -0.42846 0.04305 1.19990 1.41558 1.68529 1.72408 1.88657 1.95543 1.98765 2.04002 2.59505 3.28902 3.34459 3.48037 3.60275 3.62495 3.68754 3.70845 3.76948 3.95996 4.04447 4.04972 4.14888 4.16973 4.20063 4.21739 4.24405 4.29785 4.40791 4.47919 4.52989 4.54765 4.61195 4.64605 4.67109 4.68177 4.71931 4.75589 4.75793 4.91614 4.92633 4.97225 4.98977 5.05004 5.16554 5.19751 5.21665 5.28401 5.44772 5.46518 5.63597 6.12289 6.26851 6.40590 6.63498 6.87301 7.11080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 C -0.202 4.202 4 C -0.209 4.209 5 C -0.034 4.034 6 O -0.558 6.558 7 Si 0.789 3.211 8 C 0.050 3.950 9 C -0.072 4.072 10 N -0.392 5.392 11 C 0.143 3.857 12 C -0.147 4.147 13 C 0.543 3.457 14 O -0.550 6.550 15 N -0.702 5.702 16 C 0.120 3.880 17 H 0.086 0.914 18 C -0.145 4.145 19 C -0.141 4.141 20 H 0.094 0.906 21 C 0.068 3.932 22 F -0.241 7.241 23 C -0.117 4.117 24 C -0.074 4.074 25 C -0.107 4.107 26 C -0.076 4.076 27 C -0.122 4.122 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.154 0.846 32 H 0.086 0.914 33 H 0.391 0.609 34 H -0.306 1.306 35 H -0.295 1.295 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.415 0.585 40 H 0.052 0.948 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.118 0.882 45 H 0.085 0.915 46 H 0.163 0.837 47 H 0.170 0.830 48 H 0.164 0.836 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -9.848 -2.433 11.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.078 4.078 3 C -0.226 4.226 4 C -0.216 4.216 5 C -0.145 4.145 6 O -0.366 6.366 7 Si 0.697 3.303 8 C -0.060 4.060 9 C -0.129 4.129 10 N -0.066 5.066 11 C 0.053 3.947 12 C -0.151 4.151 13 C 0.331 3.669 14 O -0.428 6.428 15 N -0.355 5.355 16 C 0.015 3.985 17 H 0.104 0.896 18 C -0.184 4.184 19 C -0.161 4.161 20 H 0.112 0.888 21 C 0.013 3.987 22 F -0.222 7.222 23 C -0.154 4.154 24 C -0.093 4.093 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.141 4.141 28 H 0.076 0.924 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.171 0.829 32 H 0.104 0.896 33 H 0.241 0.759 34 H -0.234 1.234 35 H -0.223 1.223 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.253 0.747 40 H 0.071 0.929 41 H 0.119 0.881 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.137 0.863 45 H 0.104 0.896 46 H 0.180 0.820 47 H 0.188 0.812 48 H 0.182 0.818 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.003 -8.906 -1.513 9.881 hybrid contribution 0.209 -0.392 0.583 0.733 sum -3.794 -9.298 -0.930 10.086 Atomic orbital electron populations 1.20280 0.87183 1.03928 1.02003 1.20524 0.93931 0.85043 1.08344 1.20640 0.91804 0.98030 1.12129 1.19594 0.95010 0.92880 1.14107 1.24357 0.93294 1.08809 0.88060 1.86400 1.44166 1.89037 1.16963 0.93687 0.79995 0.74402 0.82208 1.20210 0.84257 0.94130 1.07386 1.20166 0.93266 0.96932 1.02562 1.41022 1.05202 1.03009 1.57349 1.17852 0.99841 0.83572 0.93456 1.20252 1.06452 0.96513 0.91922 1.18535 0.77500 0.86158 0.84737 1.90912 1.45972 1.18093 1.87811 1.45749 1.68168 1.17138 1.04417 1.22402 0.97837 0.96665 0.81570 0.89597 1.23569 0.97988 1.01705 0.95104 1.22963 0.98205 1.00128 0.94760 0.88804 1.22222 0.93485 0.89291 0.93696 1.92738 1.79334 1.70068 1.80076 1.23259 1.01296 0.98668 0.92225 1.21624 0.95468 0.91233 1.00991 1.21698 0.97756 1.01944 0.91038 1.21704 0.94467 0.92636 1.00687 1.21473 0.99929 0.96247 0.96455 0.92449 0.88350 0.91714 0.82886 0.89620 0.75915 1.23446 1.22306 0.90345 0.91112 0.92879 0.74677 0.92888 0.88124 0.88645 0.88684 0.86340 0.89600 0.81982 0.81205 0.81836 0.84647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.29 10.09 71.24 0.72 0.43 16 2 C 0.03 0.28 6.00 41.02 0.25 0.52 16 3 C -0.20 -1.89 9.27 22.16 0.21 -1.68 16 4 C -0.21 -2.25 5.35 -19.98 -0.11 -2.36 16 5 C -0.03 -0.30 2.61 71.24 0.19 -0.12 16 6 O -0.56 -4.01 12.88 -148.98 -1.92 -5.92 16 7 Si 0.79 5.08 30.81 68.60 2.11 7.19 16 8 C 0.05 0.55 5.98 41.02 0.25 0.80 16 9 C -0.07 -0.58 9.87 71.23 0.70 0.12 16 10 N -0.39 -3.48 1.45 -319.53 -0.46 -3.94 16 11 C 0.14 0.61 4.52 38.50 0.17 0.78 16 12 C -0.15 -0.25 5.89 -19.99 -0.12 -0.37 16 13 C 0.54 3.13 7.77 86.71 0.67 3.81 16 14 O -0.55 -8.25 13.29 -4.00 -0.05 -8.31 16 15 N -0.70 1.26 5.31 -443.15 -2.35 -1.10 16 16 C 0.12 -0.05 4.21 45.52 0.19 0.14 16 17 H 0.09 0.54 7.50 -2.39 -0.02 0.53 16 18 C -0.14 0.11 7.45 31.18 0.23 0.34 16 19 C -0.14 0.48 4.09 -10.21 -0.04 0.44 16 20 H 0.09 -0.08 8.14 -2.39 -0.02 -0.10 16 21 C 0.07 -0.29 7.36 71.98 0.53 0.24 16 22 F -0.24 -1.17 17.36 44.97 0.78 -0.39 16 23 C -0.12 0.81 7.39 31.12 0.23 1.04 16 24 C -0.07 0.49 9.54 22.52 0.21 0.70 16 25 C -0.11 0.97 10.02 22.24 0.22 1.19 16 26 C -0.08 0.53 10.03 22.30 0.22 0.75 16 27 C -0.12 0.10 9.96 22.35 0.22 0.32 16 28 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 29 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 30 H 0.06 0.14 7.83 -2.39 -0.02 0.12 16 31 H 0.15 0.74 6.59 -2.91 -0.02 0.72 16 32 H 0.09 0.97 7.49 -2.39 -0.02 0.95 16 33 H 0.39 -0.28 8.70 -74.06 -0.64 -0.93 16 34 H -0.31 -4.32 7.11 99.48 0.71 -3.62 16 35 H -0.30 -3.42 7.11 99.48 0.71 -2.71 16 36 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.07 0.63 7.49 -2.39 -0.02 0.61 16 38 H 0.05 0.41 7.83 -2.39 -0.02 0.39 16 39 H 0.41 -3.83 6.74 -92.71 -0.63 -4.45 16 40 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.10 -0.36 7.98 -2.38 -0.02 -0.37 16 42 H 0.10 -0.80 7.96 -2.39 -0.02 -0.81 16 43 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 44 H 0.12 -1.45 8.07 -2.39 -0.02 -1.47 16 45 H 0.09 -0.58 8.14 -2.39 -0.02 -0.60 16 46 H 0.16 -2.18 6.40 -2.91 -0.02 -2.20 16 47 H 0.17 -2.60 8.06 -2.91 -0.02 -2.63 16 48 H 0.16 -1.98 8.06 -2.91 -0.02 -2.00 16 49 H 0.14 -0.16 8.06 -2.91 -0.02 -0.18 16 Total: 0.00 -26.75 404.46 2.81 -23.94 By element: Atomic # 1 Polarization: -18.34 SS G_CDS: -0.25 Total: -18.59 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: 4.95 Total: 7.11 kcal Atomic # 7 Polarization: -2.22 SS G_CDS: -2.82 Total: -5.04 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -1.97 Total: -14.23 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.78 Total: -0.39 kcal Atomic # 14 Polarization: 5.08 SS G_CDS: 2.11 Total: 7.19 kcal Total: -26.75 2.81 -23.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12335856.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.117 kcal (2) G-P(sol) polarization free energy of solvation -26.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -23.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds