Wall clock time and date at job start Tue Mar 9 2021 13:09:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46853 * 2 1 4 4 C 1.52998 * 109.47448 * 66.25543 * 3 2 1 5 5 C 1.53001 * 109.47127 * 186.25206 * 3 2 1 6 6 C 1.50697 * 109.47281 * 180.85660 * 5 3 2 7 7 O 1.21286 * 119.99829 * 117.56764 * 6 5 3 8 8 N 1.34774 * 120.00378 * 297.57276 * 6 5 3 9 9 C 1.46504 * 120.00231 * 185.59722 * 8 6 5 10 10 H 1.08998 * 112.85201 * 23.79892 * 9 8 6 11 11 C 1.53778 * 113.61444 * 154.99773 * 9 8 6 12 12 C 1.53786 * 87.08264 * 139.97759 * 11 9 8 13 13 H 1.09002 * 113.60991 * 89.11354 * 12 11 9 14 14 C 1.52990 * 113.61835 * 219.93486 * 12 11 9 15 15 F 1.39903 * 109.47492 * 185.00068 * 14 12 11 16 16 C 1.53785 * 113.61040 * 252.49488 * 9 8 6 17 17 N 1.46493 * 109.47359 * 300.86095 * 5 3 2 18 18 C 1.36349 * 125.63578 * 297.80882 * 17 5 3 19 19 C 1.34848 * 108.21658 * 179.97438 * 18 17 5 20 20 C 1.40893 * 107.42222 * 359.97438 * 19 18 17 21 21 C 1.34852 * 107.41028 * 359.73631 * 20 19 18 22 22 C 1.50708 * 125.88693 * 180.25705 * 21 20 19 23 23 O 1.42895 * 109.46997 * 150.19782 * 22 21 20 24 24 Si 1.86299 * 109.46939 * 30.19779 * 22 21 20 25 25 H 1.09005 * 109.47034 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47517 * 300.00048 * 1 2 3 27 27 H 1.09000 * 109.47486 * 60.00005 * 1 2 3 28 28 H 1.08996 * 109.47031 * 119.99907 * 2 1 3 29 29 H 1.08997 * 109.47044 * 240.00074 * 2 1 3 30 30 H 1.08996 * 109.47532 * 306.25413 * 3 2 1 31 31 H 1.09001 * 109.47486 * 48.79390 * 4 3 2 32 32 H 1.08997 * 109.47584 * 168.79693 * 4 3 2 33 33 H 1.09008 * 109.47152 * 288.79896 * 4 3 2 34 34 H 1.09000 * 109.46878 * 60.85884 * 5 3 2 35 35 H 0.97000 * 120.00123 * 5.59215 * 8 6 5 36 36 H 1.09000 * 113.61603 * 254.52232 * 11 9 8 37 37 H 1.09001 * 113.61468 * 25.43097 * 11 9 8 38 38 H 1.09002 * 109.47251 * 305.00373 * 14 12 11 39 39 H 1.09002 * 109.47176 * 64.99467 * 14 12 11 40 40 H 1.09000 * 113.61598 * 334.56179 * 16 9 8 41 41 H 1.08998 * 113.61388 * 105.47323 * 16 9 8 42 42 H 1.08000 * 125.88922 * 0.02562 * 18 17 5 43 43 H 1.08007 * 126.29028 * 179.97438 * 19 18 17 44 44 H 1.07995 * 126.29391 * 180.02562 * 20 19 18 45 45 H 1.09005 * 109.46594 * 270.20167 * 22 21 20 46 46 H 0.96691 * 114.00341 * 299.99661 * 23 22 21 47 47 H 1.48500 * 110.00158 * 58.68431 * 24 22 21 48 48 H 1.48507 * 109.99812 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6623 2.1170 1.3203 5 6 3.5618 1.4454 -0.1571 6 6 4.0663 2.8653 -0.1360 7 8 4.8202 3.2280 0.7421 8 7 3.6797 3.7322 -1.0928 9 6 4.2637 5.0748 -1.1442 10 1 5.2423 5.1293 -0.6673 11 6 4.2242 5.7105 -2.5439 12 6 3.8675 7.0341 -1.8467 13 1 4.7376 7.6254 -1.5612 14 6 2.8105 7.8530 -2.5900 15 9 2.6355 9.0828 -1.9463 16 6 3.2966 6.1845 -0.6989 17 7 4.1680 0.6953 0.9456 18 6 4.0801 1.0165 2.2678 19 6 4.7639 0.0922 2.9725 20 6 5.2928 -0.8339 2.0518 21 6 4.9072 -0.4434 0.8200 22 6 5.2399 -1.1426 -0.4730 23 8 4.1901 -0.9227 -1.4172 24 14 5.4224 -2.9703 -0.1614 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.5881 1.9876 -0.8287 31 1 1.9414 1.4698 2.1519 32 1 2.1892 3.0672 1.4067 33 1 0.5870 2.2944 1.3432 34 1 3.8301 0.9786 -1.1048 35 1 3.0148 3.4671 -1.7475 36 1 5.1929 5.7274 -3.0433 37 1 3.4268 5.3221 -3.1775 38 1 3.1376 8.0230 -3.6157 39 1 1.8664 7.3081 -2.5955 40 1 2.2457 5.9258 -0.8282 41 1 3.5166 6.5840 0.2911 42 1 3.5531 1.8644 2.6797 43 1 4.8840 0.0665 4.0455 44 1 5.8925 -1.7000 2.2893 45 1 6.1747 -0.7466 -0.8700 46 1 3.3273 -1.2507 -1.1294 47 1 4.1651 -3.5161 0.4099 48 1 5.7512 -3.6711 -1.4287 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_12360566.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:12 Heat of formation + Delta-G solvation = -38.122356 kcal Electronic energy + Delta-G solvation = -29746.919064 eV Core-core repulsion = 25719.806921 eV Total energy + Delta-G solvation = -4027.112143 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.56813 -42.88910 -41.10690 -39.49748 -38.09579 -37.62434 -34.80357 -33.34166 -31.21032 -30.53953 -29.56791 -28.06662 -26.78872 -26.05162 -25.31294 -23.62787 -22.01949 -21.58638 -21.44082 -20.94159 -20.36629 -18.74495 -18.08178 -17.71578 -17.14376 -16.99312 -16.89455 -16.76440 -16.34616 -16.07203 -15.87936 -15.67529 -15.38086 -15.08103 -14.87445 -14.51315 -14.41389 -14.24688 -14.00065 -13.66034 -13.60468 -13.50616 -13.21971 -13.07757 -13.01370 -12.94153 -12.53724 -12.51492 -12.30844 -12.11547 -12.06712 -11.97088 -11.79120 -11.60349 -11.54375 -11.31600 -11.04721 -10.76967 -10.17749 -9.50550 -8.86638 -4.86810 1.06214 1.30044 1.35470 1.67812 1.80102 1.99686 2.12151 2.23528 3.05468 3.30016 3.32930 3.37718 3.50594 3.61159 3.62513 3.71355 3.79257 3.88981 4.06664 4.07985 4.19878 4.24079 4.25623 4.33529 4.43895 4.49557 4.54179 4.54205 4.58395 4.64910 4.71692 4.72764 4.74317 4.77107 4.85404 4.93643 4.94094 4.99555 5.04111 5.06066 5.19683 5.25683 5.34095 5.36522 5.42036 5.46703 6.02211 6.24489 6.26766 6.35026 6.47999 7.03430 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.087 4.087 4 C -0.161 4.161 5 C 0.105 3.895 6 C 0.507 3.493 7 O -0.564 6.564 8 N -0.700 5.700 9 C 0.119 3.881 10 H 0.090 0.910 11 C -0.119 4.119 12 C -0.142 4.142 13 H 0.095 0.905 14 C 0.067 3.933 15 F -0.241 7.241 16 C -0.145 4.145 17 N -0.414 5.414 18 C 0.008 3.992 19 C -0.224 4.224 20 C -0.195 4.195 21 C -0.031 4.031 22 C -0.058 4.058 23 O -0.543 6.543 24 Si 0.791 3.209 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.156 0.844 35 H 0.418 0.582 36 H 0.086 0.914 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.055 0.945 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.164 0.836 45 H 0.124 0.876 46 H 0.380 0.620 47 H -0.287 1.287 48 H -0.289 1.289 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.254 -2.089 -4.938 6.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.106 4.106 4 C -0.218 4.218 5 C -0.001 4.001 6 C 0.292 3.708 7 O -0.442 6.442 8 N -0.353 5.353 9 C 0.014 3.986 10 H 0.108 0.892 11 C -0.157 4.157 12 C -0.161 4.161 13 H 0.114 0.886 14 C 0.012 3.988 15 F -0.222 7.222 16 C -0.183 4.183 17 N -0.090 5.090 18 C -0.122 4.122 19 C -0.248 4.248 20 C -0.219 4.219 21 C -0.141 4.141 22 C -0.166 4.166 23 O -0.354 6.354 24 Si 0.693 3.307 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.135 0.865 31 H 0.080 0.920 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.173 0.827 35 H 0.256 0.744 36 H 0.104 0.896 37 H 0.135 0.865 38 H 0.112 0.888 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.074 0.926 42 H 0.174 0.826 43 H 0.159 0.841 44 H 0.181 0.819 45 H 0.141 0.859 46 H 0.232 0.768 47 H -0.213 1.213 48 H -0.217 1.217 Dipole moment (debyes) X Y Z Total from point charges -2.674 -2.143 -5.115 6.157 hybrid contribution -1.108 0.762 0.026 1.345 sum -3.782 -1.381 -5.089 6.489 Atomic orbital electron populations 1.21777 0.94212 1.02235 1.02596 1.21609 0.97176 0.94662 1.01923 1.21527 0.89779 0.98733 1.00516 1.22213 1.02630 0.99673 0.97312 1.21983 0.95427 0.89561 0.93137 1.20949 0.80429 0.87867 0.81529 1.90776 1.37499 1.79019 1.36894 1.45793 1.44086 1.13370 1.32003 1.22456 0.97400 0.80045 0.98724 0.89216 1.23289 1.04364 0.92946 0.95074 1.22945 0.99499 0.96033 0.97628 0.88645 1.22240 1.00311 0.79784 0.96455 1.92741 1.96954 1.47868 1.84683 1.23558 1.00505 0.95741 0.98518 1.43512 1.40465 1.19626 1.05353 1.21928 1.05704 1.01756 0.82845 1.21090 1.05395 0.98570 0.99791 1.20885 1.06700 1.03332 0.90993 1.20977 1.03936 0.91973 0.97242 1.24960 0.93087 1.12561 0.85988 1.86502 1.20992 1.82173 1.45684 0.93176 0.86194 0.69998 0.81314 0.92570 0.92619 0.91272 0.92919 0.90809 0.86549 0.91986 0.93884 0.90505 0.82717 0.74443 0.89577 0.86494 0.88761 0.88774 0.88005 0.92601 0.82639 0.84139 0.81880 0.85880 0.76783 1.21311 1.21663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.87 9.70 71.98 0.70 1.57 16 2 C -0.12 0.57 4.69 30.59 0.14 0.71 16 3 C -0.09 0.44 2.18 -10.80 -0.02 0.41 16 4 C -0.16 0.30 7.15 71.98 0.51 0.81 16 5 C 0.10 -0.06 2.30 44.25 0.10 0.04 16 6 C 0.51 1.54 5.62 87.66 0.49 2.04 16 7 O -0.56 -7.23 14.95 -3.05 -0.05 -7.28 16 8 N -0.70 2.71 5.30 -440.03 -2.33 0.38 16 9 C 0.12 -0.28 4.20 45.52 0.19 -0.09 16 10 H 0.09 0.33 7.54 -2.39 -0.02 0.31 16 11 C -0.12 0.95 7.39 31.12 0.23 1.18 16 12 C -0.14 0.66 4.09 -10.27 -0.04 0.61 16 13 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 14 C 0.07 -0.33 7.39 71.98 0.53 0.20 16 15 F -0.24 -1.01 17.36 44.97 0.78 -0.23 16 16 C -0.14 0.39 7.43 31.12 0.23 0.62 16 17 N -0.41 -1.69 1.76 -491.52 -0.86 -2.55 16 18 C 0.01 0.06 7.68 83.21 0.64 0.70 16 19 C -0.22 -1.55 10.86 22.14 0.24 -1.30 16 20 C -0.19 -0.81 9.43 22.14 0.21 -0.61 16 21 C -0.03 -0.11 6.16 41.08 0.25 0.14 16 22 C -0.06 0.01 2.95 71.24 0.21 0.22 16 23 O -0.54 0.55 9.84 -148.98 -1.47 -0.92 16 24 Si 0.79 -1.43 31.15 68.60 2.14 0.70 16 25 H 0.06 -0.27 8.14 -2.38 -0.02 -0.29 16 26 H 0.05 -0.25 6.87 -2.39 -0.02 -0.27 16 27 H 0.07 -0.54 8.14 -2.39 -0.02 -0.56 16 28 H 0.05 -0.02 7.72 -2.39 -0.02 -0.04 16 29 H 0.07 -0.53 5.53 -2.39 -0.01 -0.54 16 30 H 0.12 -1.19 7.61 -2.39 -0.02 -1.21 16 31 H 0.06 0.07 5.35 -2.39 -0.01 0.06 16 32 H 0.04 0.07 6.73 -2.39 -0.02 0.05 16 33 H 0.08 -0.31 7.17 -2.38 -0.02 -0.32 16 34 H 0.16 -0.34 5.28 -2.39 -0.01 -0.35 16 35 H 0.42 -4.45 8.16 -92.71 -0.76 -5.21 16 36 H 0.09 -0.67 8.14 -2.39 -0.02 -0.69 16 37 H 0.12 -1.49 8.08 -2.39 -0.02 -1.51 16 38 H 0.09 -0.77 8.14 -2.39 -0.02 -0.79 16 39 H 0.09 -0.82 7.85 -2.39 -0.02 -0.84 16 40 H 0.10 -0.56 7.90 -2.39 -0.02 -0.58 16 41 H 0.06 0.11 8.14 -2.39 -0.02 0.09 16 42 H 0.16 1.12 6.08 -2.91 -0.02 1.10 16 43 H 0.14 0.66 8.06 -2.91 -0.02 0.64 16 44 H 0.16 -0.21 6.90 -2.91 -0.02 -0.23 16 45 H 0.12 -0.14 7.96 -2.38 -0.02 -0.16 16 46 H 0.38 -1.63 5.54 -74.06 -0.41 -2.04 16 47 H -0.29 -0.94 7.11 99.48 0.71 -0.24 16 48 H -0.29 -1.12 7.11 99.48 0.71 -0.41 16 Total: 0.00 -19.56 368.97 2.69 -16.88 By element: Atomic # 1 Polarization: -14.11 SS G_CDS: -0.15 Total: -14.26 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 4.62 Total: 7.27 kcal Atomic # 7 Polarization: 1.02 SS G_CDS: -3.19 Total: -2.17 kcal Atomic # 8 Polarization: -6.69 SS G_CDS: -1.51 Total: -8.20 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.78 Total: -0.23 kcal Atomic # 14 Polarization: -1.43 SS G_CDS: 2.14 Total: 0.70 kcal Total: -19.56 2.69 -16.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_12360566.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.243 kcal (2) G-P(sol) polarization free energy of solvation -19.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds