Wall clock time and date at job start Tue Mar 9 2021 13:09:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86293 * 109.47041 * 2 1 4 4 C 1.50707 * 109.46442 * 119.99698 * 2 1 3 5 5 C 1.34186 * 126.53987 * 255.02358 * 4 2 1 6 6 N 1.36864 * 109.96775 * 180.02562 * 5 4 2 7 7 C 1.37396 * 109.97920 * 359.97438 * 6 5 4 8 8 C 1.39339 * 133.25703 * 180.02562 * 7 6 5 9 9 C 1.36349 * 120.23653 * 179.21359 * 8 7 6 10 10 C 1.40179 * 120.67177 * 0.60448 * 9 8 7 11 11 C 1.47653 * 119.97428 * 179.60673 * 10 9 8 12 12 O 1.21572 * 120.00087 * 180.02562 * 11 10 9 13 13 N 1.34782 * 119.99946 * 0.02562 * 11 10 9 14 14 C 1.46501 * 119.99824 * 179.97438 * 13 11 10 15 15 H 1.09001 * 112.85131 * 336.20098 * 14 13 11 16 16 C 1.53788 * 113.60947 * 107.50535 * 14 13 11 17 17 C 1.53779 * 87.07906 * 139.98334 * 16 14 13 18 18 H 1.09002 * 113.69100 * 89.12556 * 17 16 14 19 19 C 1.52994 * 113.61329 * 220.01775 * 17 16 14 20 20 F 1.39901 * 109.47366 * 277.50068 * 19 17 16 21 21 C 1.53776 * 113.61463 * 205.00224 * 14 13 11 22 22 C 1.39181 * 120.04782 * 359.62833 * 10 9 8 23 23 C 1.39236 * 119.39649 * 359.97438 * 22 10 9 24 24 H 0.96700 * 114.00311 * 300.00531 * 1 2 3 25 25 H 1.08999 * 109.47293 * 239.99660 * 2 1 3 26 26 H 1.48506 * 109.99973 * 299.99283 * 3 2 1 27 27 H 1.48493 * 110.00375 * 61.31384 * 3 2 1 28 28 H 1.08003 * 125.01632 * 0.03754 * 5 4 2 29 29 H 0.97002 * 125.00818 * 180.02562 * 6 5 4 30 30 H 1.08004 * 119.87681 * 359.93902 * 8 7 6 31 31 H 1.07999 * 119.66678 * 180.19455 * 9 8 7 32 32 H 0.97001 * 120.00062 * 0.02562 * 13 11 10 33 33 H 1.09001 * 113.61085 * 254.52964 * 16 14 13 34 34 H 1.08999 * 113.61345 * 25.42896 * 16 14 13 35 35 H 1.09004 * 109.47364 * 37.49818 * 19 17 16 36 36 H 1.08995 * 109.47444 * 157.49500 * 19 17 16 37 37 H 1.09001 * 113.61228 * 334.56719 * 21 14 13 38 38 H 1.08994 * 113.61521 * 105.47462 * 21 14 13 39 39 H 1.07998 * 120.30316 * 179.97438 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7564 0.0000 4 6 1.9312 -0.7104 1.2306 5 6 2.4601 -0.1386 2.3233 6 7 2.8026 -1.1004 3.2348 7 6 2.4955 -2.3454 2.7414 8 6 2.6344 -3.6351 3.2503 9 6 2.2161 -4.7093 2.5221 10 6 1.6536 -4.5355 1.2499 11 6 1.2138 -5.7103 0.4711 12 8 0.7263 -5.5602 -0.6325 13 7 1.3527 -6.9491 0.9836 14 6 0.9158 -8.1146 0.2110 15 1 0.1534 -7.8705 -0.5288 16 6 2.0771 -8.9515 -0.3512 17 6 1.2511 -10.1970 0.0109 18 1 0.5807 -10.5243 -0.7839 19 6 2.0872 -11.3395 0.5909 20 9 2.6714 -12.0660 -0.4522 21 6 0.5626 -9.3328 1.0805 22 6 1.5098 -3.2565 0.7203 23 6 1.9286 -2.1572 1.4652 24 1 -0.3934 0.4418 0.7650 25 1 1.7924 -0.5139 -0.8899 26 1 1.5616 2.4678 -1.2086 27 1 1.5878 2.4586 1.2241 28 1 2.5954 0.9238 2.4629 29 1 3.2025 -0.9284 4.1016 30 1 3.0641 -3.7835 4.2299 31 1 2.3252 -5.7046 2.9268 32 1 1.7413 -7.0688 1.8643 33 1 2.2280 -8.8241 -1.4232 34 1 2.9999 -8.8578 0.2212 35 1 2.8689 -10.9294 1.2303 36 1 1.4461 -11.9975 1.1775 37 1 1.0714 -9.3435 2.0444 38 1 -0.5090 -9.5134 1.1644 39 1 1.0774 -3.1179 -0.2596 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_13287722.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:47 Heat of formation + Delta-G solvation = -34.838143 kcal Electronic energy + Delta-G solvation = -23947.617615 eV Core-core repulsion = 20158.119941 eV Total energy + Delta-G solvation = -3789.497674 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 305.121 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.52820 -42.46832 -41.21668 -39.52084 -38.04139 -37.45604 -34.80070 -33.28740 -31.00511 -30.55075 -29.15591 -26.73758 -26.50035 -25.28145 -23.48862 -23.11943 -21.60854 -21.00443 -20.57192 -19.34433 -18.43067 -17.79920 -17.58924 -17.09040 -16.91453 -16.74747 -16.29811 -16.16453 -15.97087 -15.73629 -15.59101 -15.14886 -15.04507 -14.80325 -14.76151 -14.11028 -13.77321 -13.62530 -13.57558 -13.45456 -12.87416 -12.62406 -12.52346 -12.49264 -12.14170 -12.00138 -11.79996 -11.50761 -11.28629 -11.01811 -10.81201 -10.48691 -10.13423 -9.33336 -8.82028 -4.87002 -0.16428 0.20246 1.34923 1.51126 1.61162 1.81469 2.01322 2.09405 2.13317 2.87346 3.36689 3.42083 3.51443 3.59675 3.64273 3.72880 3.79548 3.84154 3.90542 4.12547 4.13915 4.23249 4.28825 4.36838 4.46283 4.53465 4.59937 4.61965 4.69782 4.77648 4.80190 4.83627 4.99388 5.01065 5.04959 5.24640 5.27078 5.34642 5.46722 5.55976 5.57354 5.98151 6.50606 6.55329 6.61426 7.17838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.558 6.558 2 C -0.064 4.064 3 Si 0.789 3.211 4 C -0.217 4.217 5 C 0.081 3.919 6 N -0.571 5.571 7 C 0.112 3.888 8 C -0.125 4.125 9 C -0.066 4.066 10 C -0.180 4.180 11 C 0.559 3.441 12 O -0.592 6.592 13 N -0.699 5.699 14 C 0.113 3.887 15 H 0.090 0.910 16 C -0.147 4.147 17 C -0.141 4.141 18 H 0.096 0.904 19 C 0.067 3.933 20 F -0.241 7.241 21 C -0.117 4.117 22 C -0.023 4.023 23 C -0.129 4.129 24 H 0.384 0.616 25 H 0.099 0.901 26 H -0.312 1.312 27 H -0.258 1.258 28 H 0.209 0.791 29 H 0.439 0.561 30 H 0.163 0.837 31 H 0.163 0.837 32 H 0.417 0.583 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.095 0.905 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.145 1.582 11.142 12.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.366 6.366 2 C -0.172 4.172 3 Si 0.692 3.308 4 C -0.224 4.224 5 C -0.046 4.046 6 N -0.174 5.174 7 C 0.002 3.998 8 C -0.145 4.145 9 C -0.085 4.085 10 C -0.184 4.184 11 C 0.349 3.651 12 O -0.473 6.473 13 N -0.351 5.351 14 C 0.008 3.992 15 H 0.108 0.892 16 C -0.186 4.186 17 C -0.160 4.160 18 H 0.115 0.885 19 C 0.013 3.987 20 F -0.223 7.223 21 C -0.155 4.155 22 C -0.042 4.042 23 C -0.133 4.133 24 H 0.233 0.767 25 H 0.117 0.883 26 H -0.240 1.240 27 H -0.183 1.183 28 H 0.226 0.774 29 H 0.280 0.720 30 H 0.181 0.819 31 H 0.180 0.820 32 H 0.256 0.744 33 H 0.074 0.926 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.105 0.895 39 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.754 2.213 9.955 11.252 hybrid contribution -1.094 -0.261 0.273 1.157 sum 3.661 1.953 10.228 11.038 Atomic orbital electron populations 1.86600 1.19420 1.80631 1.49918 1.24787 0.82719 1.12530 0.97120 0.94073 0.89597 0.69917 0.77233 1.20760 1.11201 0.91521 0.98932 1.22169 0.98489 0.95724 0.88232 1.41760 1.53800 1.03153 1.18722 1.18643 0.99600 0.87915 0.93634 1.20081 1.04264 0.87947 1.02197 1.20892 0.95733 1.00339 0.91564 1.19593 1.09057 0.92141 0.97620 1.18579 0.77139 0.84282 0.85140 1.90762 1.47028 1.86855 1.22701 1.45723 1.63215 1.04507 1.21668 1.22510 0.97483 0.83667 0.95509 0.89158 1.23575 0.98530 0.94917 1.01597 1.22940 0.98747 0.94040 1.00312 0.88531 1.22231 0.97387 0.92458 0.86668 1.92738 1.86716 1.80230 1.62568 1.23277 1.02511 0.91470 0.98245 1.20596 0.94482 0.90858 0.98303 1.19189 1.05083 0.93511 0.95531 0.76700 0.88344 1.24011 1.18329 0.77413 0.71973 0.81931 0.81985 0.74391 0.92603 0.88040 0.88685 0.88687 0.86350 0.89455 0.87702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.98 12.88 -148.98 -1.92 -5.89 16 2 C -0.06 -0.18 3.06 71.24 0.22 0.04 16 3 Si 0.79 -2.33 30.82 68.60 2.11 -0.22 16 4 C -0.22 -0.39 5.58 -18.61 -0.10 -0.49 16 5 C 0.08 -0.43 10.43 82.98 0.87 0.44 16 6 N -0.57 3.64 6.05 -187.48 -1.13 2.50 16 7 C 0.11 -0.04 7.27 39.19 0.28 0.25 16 8 C -0.12 0.49 10.00 22.09 0.22 0.71 16 9 C -0.07 0.16 9.46 22.30 0.21 0.37 16 10 C -0.18 -1.11 5.87 -20.09 -0.12 -1.22 16 11 C 0.56 5.15 7.76 86.73 0.67 5.82 16 12 O -0.59 -11.42 15.93 -3.94 -0.06 -11.48 16 13 N -0.70 -0.20 5.30 -443.08 -2.35 -2.56 16 14 C 0.11 0.08 4.24 45.52 0.19 0.27 16 15 H 0.09 0.61 7.46 -2.39 -0.02 0.59 16 16 C -0.15 0.02 7.43 31.12 0.23 0.26 16 17 C -0.14 0.44 4.10 -10.27 -0.04 0.40 16 18 H 0.10 -0.11 8.14 -2.39 -0.02 -0.13 16 19 C 0.07 -0.27 7.35 71.98 0.53 0.26 16 20 F -0.24 -1.21 17.36 44.97 0.78 -0.43 16 21 C -0.12 0.74 7.39 31.12 0.23 0.97 16 22 C -0.02 -0.23 9.64 22.74 0.22 -0.01 16 23 C -0.13 -0.76 6.34 -20.21 -0.13 -0.89 16 24 H 0.38 -0.05 8.70 -74.06 -0.64 -0.70 16 25 H 0.10 0.49 7.96 -2.39 -0.02 0.47 16 26 H -0.31 -1.99 7.11 99.48 0.71 -1.29 16 27 H -0.26 0.82 7.00 99.48 0.70 1.52 16 28 H 0.21 -2.56 6.28 -2.91 -0.02 -2.58 16 29 H 0.44 -5.92 8.96 -92.71 -0.83 -6.75 16 30 H 0.16 -1.79 8.06 -2.91 -0.02 -1.82 16 31 H 0.16 -1.69 6.36 -2.91 -0.02 -1.71 16 32 H 0.42 -3.14 6.73 -92.71 -0.62 -3.76 16 33 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.10 -0.30 7.96 -2.39 -0.02 -0.32 16 35 H 0.09 -0.76 7.94 -2.39 -0.02 -0.77 16 36 H 0.09 -0.71 8.14 -2.39 -0.02 -0.73 16 37 H 0.12 -1.37 8.08 -2.39 -0.02 -1.39 16 38 H 0.09 -0.57 8.14 -2.39 -0.02 -0.59 16 39 H 0.10 1.62 7.64 -2.91 -0.02 1.60 16 Total: 0.00 -29.00 333.08 -0.04 -29.04 By element: Atomic # 1 Polarization: -17.18 SS G_CDS: -0.95 Total: -18.13 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 3.48 Total: 7.17 kcal Atomic # 7 Polarization: 3.43 SS G_CDS: -3.49 Total: -0.05 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -1.98 Total: -17.38 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.78 Total: -0.43 kcal Atomic # 14 Polarization: -2.33 SS G_CDS: 2.11 Total: -0.22 kcal Total: -29.00 -0.04 -29.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_13287722.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.797 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds