Wall clock time and date at job start Tue Mar 9 2021 13:09:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38971 * 119.96057 * 2 1 4 4 O 1.35716 * 119.90887 * 359.95086 * 3 2 1 5 5 C 1.39017 * 120.17838 * 179.97438 * 3 2 1 6 6 C 1.50704 * 119.95180 * 179.97438 * 5 3 2 7 7 O 1.42890 * 109.47391 * 74.99643 * 6 5 3 8 8 Si 1.86301 * 109.46717 * 194.99658 * 6 5 3 9 9 C 1.37676 * 120.09001 * 359.97438 * 5 3 2 10 10 C 1.39755 * 119.90915 * 0.02562 * 9 5 3 11 11 C 1.47605 * 120.08176 * 179.97438 * 10 9 5 12 12 O 1.21580 * 120.00258 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99348 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99606 * 179.97438 * 13 11 10 15 15 H 1.09002 * 112.85305 * 334.66779 * 14 13 11 16 16 C 1.53784 * 113.61142 * 105.86450 * 14 13 11 17 17 C 1.53956 * 87.01839 * 139.95257 * 16 14 13 18 18 H 1.08997 * 113.61651 * 89.20393 * 17 16 14 19 19 C 1.53006 * 113.66653 * 220.06435 * 17 16 14 20 20 F 1.39891 * 109.47274 * 162.55664 * 19 17 16 21 21 C 1.53772 * 87.11213 * 334.63371 * 17 16 14 22 22 C 1.37731 * 119.95310 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.46947 * 270.02450 * 1 2 3 24 24 H 1.09001 * 109.47271 * 30.02378 * 1 2 3 25 25 H 1.09000 * 109.47504 * 150.02951 * 1 2 3 26 26 H 0.96694 * 113.99878 * 90.00246 * 4 3 2 27 27 H 1.09006 * 109.46857 * 314.99208 * 6 5 3 28 28 H 0.96697 * 114.00286 * 59.99760 * 7 6 5 29 29 H 1.48500 * 109.99940 * 179.97438 * 8 6 5 30 30 H 1.48496 * 109.99988 * 301.31518 * 8 6 5 31 31 H 1.08000 * 120.04162 * 180.28108 * 9 5 3 32 32 H 0.97002 * 120.00772 * 0.02562 * 13 11 10 33 33 H 1.09001 * 113.61007 * 254.52820 * 16 14 13 34 34 H 1.09001 * 113.61697 * 25.43015 * 16 14 13 35 35 H 1.09002 * 109.47071 * 282.56699 * 19 17 16 36 36 H 1.09004 * 109.46687 * 42.55437 * 19 17 16 37 37 H 1.08998 * 113.61986 * 270.81456 * 21 17 16 38 38 H 1.09001 * 113.69160 * 139.92359 * 21 17 16 39 39 H 1.07998 * 120.04558 * 0.04733 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2010 1.2040 0.0000 4 8 1.5197 2.3778 -0.0010 5 6 3.5912 1.2093 0.0005 6 6 4.3386 2.5179 0.0000 7 8 4.2715 3.1054 1.3008 8 14 6.1200 2.2152 -0.4537 9 6 4.2859 0.0207 0.0016 10 6 3.5917 -1.1923 0.0016 11 6 4.3328 -2.4688 0.0022 12 8 5.5486 -2.4660 0.0022 13 7 3.6615 -3.6375 0.0017 14 6 4.3970 -4.9046 0.0017 15 1 5.3948 -4.8148 -0.4277 16 6 4.3725 -5.6310 1.3569 17 6 4.2039 -6.9387 0.5621 18 1 5.1487 -7.4071 0.2866 19 6 3.2171 -7.9205 1.1971 20 9 2.8264 -8.8694 0.2465 21 6 3.5886 -6.0861 -0.5600 22 6 2.1946 -1.1933 0.0005 23 1 -0.3633 0.0004 1.0277 24 1 -0.3634 0.8898 -0.5142 25 1 -0.3634 -0.8902 -0.5134 26 1 1.3217 2.7183 0.8820 27 1 3.8881 3.1933 -0.7275 28 1 4.6549 2.5582 1.9998 29 1 6.8679 3.4981 -0.4584 30 1 6.7367 1.2709 0.5123 31 1 5.3659 0.0257 0.0066 32 1 2.6915 -3.6398 0.0005 33 1 5.3141 -5.5689 1.9025 34 1 3.5084 -5.3792 1.9718 35 1 3.6952 -8.4236 2.0377 36 1 2.3404 -7.3773 1.5500 37 1 2.5098 -5.9590 -0.4703 38 1 3.8971 -6.3900 -1.5603 39 1 1.6546 -2.1286 0.0002 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_15744752_13287732.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:09:55 Heat of formation + Delta-G solvation = -112.438275 kcal Electronic energy + Delta-G solvation = -23688.149145 eV Core-core repulsion = 19898.482476 eV Total energy + Delta-G solvation = -3789.666669 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.126 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.55984 -41.80714 -40.86970 -39.38960 -37.96708 -37.50941 -34.89938 -34.04603 -31.89208 -29.46998 -28.12951 -26.93110 -26.87941 -25.30496 -23.23842 -22.11776 -21.58068 -20.82470 -19.64448 -18.75603 -18.16400 -17.81113 -17.18949 -16.92332 -16.79044 -16.55574 -16.21258 -16.07129 -15.89832 -15.63861 -15.60973 -15.01062 -14.66949 -14.51874 -14.13550 -13.90614 -13.70007 -13.51531 -13.36625 -13.12949 -13.08652 -12.80832 -12.70482 -12.43796 -11.95369 -11.75208 -11.68444 -11.66263 -11.46635 -10.95763 -10.61271 -10.19839 -10.04640 -9.70433 -4.94460 -0.42817 0.01583 1.24983 1.60262 1.61407 1.95166 1.99577 2.52421 3.03954 3.19417 3.24984 3.29560 3.42625 3.44038 3.51951 3.60713 3.66768 3.89819 3.90006 3.99360 4.08572 4.13570 4.25654 4.45616 4.46765 4.49502 4.51768 4.57178 4.62269 4.63634 4.70230 4.82551 4.88116 4.95346 5.01581 5.05331 5.11092 5.22746 5.39331 5.49533 6.31711 6.36018 6.52900 7.10400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.118 4.118 3 C 0.162 3.838 4 O -0.488 6.488 5 C -0.148 4.148 6 C -0.067 4.067 7 O -0.528 6.528 8 Si 0.684 3.316 9 C -0.053 4.053 10 C -0.140 4.140 11 C 0.562 3.438 12 O -0.532 6.532 13 N -0.717 5.717 14 C 0.124 3.876 15 H 0.120 0.880 16 C -0.143 4.143 17 C -0.144 4.144 18 H 0.106 0.894 19 C 0.073 3.927 20 F -0.216 7.216 21 C -0.138 4.138 22 C -0.065 4.065 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.399 0.601 27 H 0.124 0.876 28 H 0.375 0.625 29 H -0.252 1.252 30 H -0.255 1.255 31 H 0.145 0.855 32 H 0.401 0.599 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.809 -1.530 1.158 4.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.118 4.118 3 C 0.116 3.884 4 O -0.299 6.299 5 C -0.149 4.149 6 C -0.176 4.176 7 O -0.334 6.334 8 Si 0.585 3.415 9 C -0.072 4.072 10 C -0.143 4.143 11 C 0.350 3.650 12 O -0.409 6.409 13 N -0.368 5.368 14 C 0.019 3.981 15 H 0.138 0.862 16 C -0.182 4.182 17 C -0.164 4.164 18 H 0.125 0.875 19 C 0.018 3.982 20 F -0.197 7.197 21 C -0.176 4.176 22 C -0.084 4.084 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.090 0.910 26 H 0.257 0.743 27 H 0.142 0.858 28 H 0.222 0.778 29 H -0.177 1.177 30 H -0.180 1.180 31 H 0.163 0.837 32 H 0.237 0.763 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.108 0.892 38 H 0.101 0.899 39 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.359 -1.056 0.446 2.623 hybrid contribution -0.846 -0.136 1.639 1.850 sum -3.205 -1.191 2.085 4.005 Atomic orbital electron populations 1.20739 0.89702 1.03889 1.02802 1.20214 0.97317 0.92080 1.02204 1.18311 0.88789 0.85300 0.95987 1.84664 1.75618 1.35668 1.33971 1.20572 0.93821 0.95846 1.04616 1.24902 1.10534 0.93820 0.88390 1.86610 1.82806 1.47653 1.16375 0.94668 0.74300 0.81245 0.91283 1.21162 1.00884 0.90240 0.94904 1.19810 0.93453 0.93410 1.07605 1.18192 0.87267 0.83663 0.75884 1.90811 1.13326 1.87507 1.49229 1.45897 1.10160 1.05337 1.75402 1.22545 0.97731 0.80949 0.96859 0.86222 1.23487 1.03530 0.93982 0.97209 1.23028 1.00402 0.94930 0.97998 0.87548 1.21938 0.98244 0.88424 0.89597 1.92784 1.92564 1.66905 1.67448 1.23353 1.00351 0.94456 0.99449 1.21100 0.92581 0.97806 0.96934 0.90893 0.90323 0.91028 0.74312 0.85808 0.77763 1.17718 1.17979 0.83737 0.76345 0.90159 0.89265 0.90482 0.90742 0.89239 0.89936 0.85076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.29 9.78 36.00 0.35 0.64 16 2 C -0.12 0.11 5.89 -104.54 -0.62 -0.51 16 3 C 0.16 0.02 6.66 -39.02 -0.26 -0.24 16 4 O -0.49 0.14 11.84 -18.85 -0.22 -0.08 16 5 C -0.15 -0.05 5.27 -104.54 -0.55 -0.61 16 6 C -0.07 -0.01 2.37 36.01 0.09 0.07 16 7 O -0.53 -0.34 12.88 -35.23 -0.45 -0.79 16 8 Si 0.68 0.11 30.25 -169.99 -5.14 -5.03 16 9 C -0.05 -0.05 8.19 -39.22 -0.32 -0.38 16 10 C -0.14 -0.08 5.87 -104.96 -0.62 -0.69 16 11 C 0.56 0.96 7.76 -12.44 -0.10 0.86 16 12 O -0.53 -2.87 15.96 5.30 0.08 -2.79 16 13 N -0.72 0.94 5.31 -54.03 -0.29 0.65 16 14 C 0.12 -0.16 4.21 -67.11 -0.28 -0.44 16 15 H 0.12 0.04 7.50 -51.93 -0.39 -0.35 16 16 C -0.14 0.33 7.45 -25.82 -0.19 0.14 16 17 C -0.14 0.35 4.11 -89.72 -0.37 -0.02 16 18 H 0.11 -0.24 8.14 -51.93 -0.42 -0.66 16 19 C 0.07 -0.15 7.33 37.16 0.27 0.12 16 20 F -0.22 -0.31 17.30 2.25 0.04 -0.27 16 21 C -0.14 0.34 7.34 -25.92 -0.19 0.15 16 22 C -0.07 0.10 9.18 -39.22 -0.36 -0.26 16 23 H 0.07 -0.24 8.14 -51.93 -0.42 -0.67 16 24 H 0.08 -0.14 7.52 -51.93 -0.39 -0.53 16 25 H 0.07 -0.25 8.08 -51.93 -0.42 -0.67 16 26 H 0.40 -1.41 9.06 45.56 0.41 -0.99 16 27 H 0.12 0.02 7.82 -51.93 -0.41 -0.38 16 28 H 0.37 -0.77 8.70 45.56 0.40 -0.38 16 29 H -0.25 -0.75 7.11 56.52 0.40 -0.35 16 30 H -0.25 -0.60 6.68 56.52 0.38 -0.22 16 31 H 0.15 0.23 4.43 -52.49 -0.23 0.00 16 32 H 0.40 -1.57 6.73 -40.82 -0.27 -1.85 16 33 H 0.08 -0.13 8.14 -51.93 -0.42 -0.55 16 34 H 0.09 -0.28 8.04 -51.93 -0.42 -0.70 16 35 H 0.08 -0.24 8.14 -51.93 -0.42 -0.66 16 36 H 0.07 -0.26 8.06 -51.93 -0.42 -0.68 16 37 H 0.09 -0.30 8.07 -51.93 -0.42 -0.72 16 38 H 0.08 -0.16 8.14 -51.93 -0.42 -0.59 16 39 H 0.13 -0.57 6.39 -52.49 -0.34 -0.90 16 LS Contribution 329.88 15.07 4.97 4.97 Total: 0.00 -7.98 329.88 -8.39 -16.36 By element: Atomic # 1 Polarization: -7.62 SS G_CDS: -4.23 Total: -11.85 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -3.14 Total: -1.16 kcal Atomic # 7 Polarization: 0.94 SS G_CDS: -0.29 Total: 0.65 kcal Atomic # 8 Polarization: -3.07 SS G_CDS: -0.59 Total: -3.66 kcal Atomic # 9 Polarization: -0.31 SS G_CDS: 0.04 Total: -0.27 kcal Atomic # 14 Polarization: 0.11 SS G_CDS: -5.14 Total: -5.03 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -7.98 -8.39 -16.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_13287732.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.075 kcal (2) G-P(sol) polarization free energy of solvation -7.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds