Wall clock time and date at job start Tue Mar 9 2021 13:10:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42901 * 1 3 3 Si 1.86299 * 109.47076 * 2 1 4 4 C 1.50704 * 109.47296 * 240.00421 * 2 1 3 5 5 C 1.33744 * 125.11383 * 300.00116 * 4 2 1 6 6 C 1.37804 * 115.07932 * 179.97438 * 5 4 2 7 7 C 1.34986 * 114.69861 * 0.02562 * 6 5 4 8 8 C 1.47555 * 125.27478 * 179.97438 * 7 6 5 9 9 C 1.39824 * 119.99767 * 359.74833 * 8 7 6 10 10 C 1.36564 * 120.00101 * 179.76536 * 9 8 7 11 11 C 1.39840 * 119.99866 * 0.50912 * 10 9 8 12 12 C 1.47555 * 120.00338 * 179.76539 * 11 10 9 13 13 O 1.21595 * 119.99972 * 179.97438 * 12 11 10 14 14 N 1.34773 * 120.00133 * 359.97438 * 12 11 10 15 15 C 1.46500 * 120.00465 * 179.97438 * 14 12 11 16 16 H 1.08997 * 112.84549 * 23.80370 * 15 14 12 17 17 C 1.53777 * 113.61629 * 154.99664 * 15 14 12 18 18 C 1.53782 * 87.08156 * 139.98332 * 17 15 14 19 19 H 1.08995 * 113.61525 * 89.19908 * 18 17 15 20 20 C 1.52995 * 113.61852 * 220.02374 * 18 17 15 21 21 F 1.39907 * 109.46922 * 299.99843 * 20 18 17 22 22 C 1.53779 * 113.61422 * 252.49750 * 15 14 12 23 23 C 1.39830 * 119.99308 * 359.74174 * 11 10 9 24 24 C 1.36565 * 120.00220 * 0.02562 * 23 11 10 25 25 S 1.75853 * 125.12121 * 119.97076 * 4 2 1 26 26 H 0.96700 * 113.99904 * 60.00030 * 1 2 3 27 27 H 1.08999 * 109.47107 * 120.00421 * 2 1 3 28 28 H 1.48497 * 110.00017 * 298.68478 * 3 2 1 29 29 H 1.48498 * 109.99912 * 60.00275 * 3 2 1 30 30 H 1.07997 * 122.46347 * 359.70306 * 5 4 2 31 31 H 1.07998 * 122.65025 * 179.97438 * 6 5 4 32 32 H 1.07993 * 120.00158 * 359.97438 * 9 8 7 33 33 H 1.07995 * 120.00726 * 180.25621 * 10 9 8 34 34 H 0.97008 * 119.99816 * 0.02562 * 14 12 11 35 35 H 1.08998 * 113.61471 * 254.53033 * 17 15 14 36 36 H 1.09000 * 113.61531 * 25.35534 * 17 15 14 37 37 H 1.08995 * 109.47771 * 59.99424 * 20 18 17 38 38 H 1.09002 * 109.47621 * 180.02562 * 20 18 17 39 39 H 1.08997 * 113.61534 * 334.56701 * 22 15 14 40 40 H 1.08998 * 113.61218 * 105.46894 * 22 15 14 41 41 H 1.08004 * 119.99862 * 180.02562 * 23 11 10 42 42 H 1.08004 * 120.00057 * 180.02562 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7103 -1.2305 5 6 1.6721 -1.9847 -1.5429 6 6 2.2372 -2.4240 -2.7205 7 6 2.9668 -1.4968 -3.3764 8 6 3.6721 -1.7149 -4.6539 9 6 3.6183 -2.9652 -5.2776 10 6 4.2671 -3.1658 -6.4624 11 6 4.9940 -2.1238 -7.0466 12 6 5.6993 -2.3419 -8.3242 13 8 6.3310 -1.4357 -8.8324 14 7 5.6433 -3.5456 -8.9279 15 6 6.3431 -3.7620 -10.1967 16 1 7.1739 -3.0722 -10.3448 17 6 6.7103 -5.2329 -10.4545 18 6 6.3159 -4.9924 -11.9213 19 1 7.1391 -4.6401 -12.5427 20 6 5.5541 -6.1605 -12.5506 21 9 6.3511 -7.3098 -12.5158 22 6 5.4026 -3.8661 -11.4089 23 6 5.0520 -0.8750 -6.4202 24 6 4.3993 -0.6732 -5.2378 25 16 2.9461 0.0117 -2.4721 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5139 0.8899 28 1 1.5878 2.4586 -1.2242 29 1 1.5615 2.4678 1.2085 30 1 1.0680 -2.6238 -0.9161 31 1 2.1073 -3.4308 -3.0891 32 1 3.0609 -3.7714 -4.8240 33 1 4.2221 -4.1303 -6.9463 34 1 5.1391 -4.2684 -8.5227 35 1 7.7698 -5.4490 -10.3171 36 1 6.0632 -5.9416 -9.9376 37 1 4.6354 -6.3384 -11.9918 38 1 5.3096 -5.9196 -13.5852 39 1 4.3972 -4.2011 -11.1540 40 1 5.4065 -2.9788 -12.0419 41 1 5.6131 -0.0700 -6.8716 42 1 4.4438 0.2915 -4.7542 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_13308390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:10:03 Heat of formation + Delta-G solvation = -30.004241 kcal Electronic energy + Delta-G solvation = -26074.213777 eV Core-core repulsion = 22027.513974 eV Total energy + Delta-G solvation = -4046.699803 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 348.098 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.52144 -41.55723 -40.32089 -39.41656 -38.87018 -37.47314 -34.97388 -33.40771 -32.24514 -30.58642 -29.34287 -27.23749 -26.71180 -25.00431 -24.08490 -23.65569 -22.94884 -21.66098 -20.80798 -20.27987 -19.17182 -18.58585 -17.87228 -17.53170 -16.97765 -16.72462 -16.66221 -16.37140 -16.27418 -16.16406 -16.13503 -15.77026 -15.43717 -15.34518 -14.93401 -14.47350 -14.44335 -14.27947 -13.80365 -13.62980 -13.52767 -13.46936 -13.20855 -13.15812 -12.99450 -12.60824 -12.53840 -12.42240 -12.08534 -11.76738 -11.54361 -11.51955 -11.36131 -11.04593 -10.87860 -10.65304 -10.18983 -10.12882 -9.55014 -9.03006 -5.08841 -0.89177 0.25020 0.33974 0.39245 0.76629 1.20282 1.52156 1.55610 1.84252 1.95056 2.06093 2.82293 3.30377 3.35030 3.39966 3.42528 3.62819 3.66767 3.69914 3.75076 3.79500 3.84695 4.09934 4.18835 4.20493 4.26743 4.32643 4.41388 4.52170 4.55692 4.61530 4.67224 4.68765 4.78991 4.85244 4.92090 4.98360 5.01778 5.04816 5.10869 5.20719 5.23041 5.29233 5.32463 5.48566 5.51409 5.73484 6.37089 6.44478 7.10958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.539 6.539 2 C -0.033 4.033 3 Si 0.709 3.291 4 C -0.218 4.218 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.160 4.160 8 C 0.007 3.993 9 C -0.109 4.109 10 C -0.067 4.067 11 C -0.152 4.152 12 C 0.557 3.443 13 O -0.582 6.582 14 N -0.700 5.700 15 C 0.115 3.885 16 H 0.096 0.904 17 C -0.130 4.130 18 C -0.142 4.142 19 H 0.101 0.899 20 C 0.067 3.933 21 F -0.236 7.236 22 C -0.134 4.134 23 C -0.064 4.064 24 C -0.129 4.129 25 S 0.122 5.878 26 H 0.388 0.612 27 H 0.140 0.860 28 H -0.266 1.266 29 H -0.272 1.272 30 H 0.154 0.846 31 H 0.167 0.833 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.416 0.584 35 H 0.075 0.925 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.071 0.929 41 H 0.128 0.872 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -4.130 0.923 4.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.347 6.347 2 C -0.146 4.146 3 Si 0.611 3.389 4 C -0.336 4.336 5 C -0.141 4.141 6 C -0.146 4.146 7 C -0.277 4.277 8 C 0.005 3.995 9 C -0.128 4.128 10 C -0.086 4.086 11 C -0.155 4.155 12 C 0.346 3.654 13 O -0.463 6.463 14 N -0.352 5.352 15 C 0.010 3.990 16 H 0.114 0.886 17 C -0.168 4.168 18 C -0.161 4.161 19 H 0.119 0.881 20 C 0.013 3.987 21 F -0.218 7.218 22 C -0.173 4.173 23 C -0.083 4.083 24 C -0.148 4.148 25 S 0.389 5.611 26 H 0.237 0.763 27 H 0.157 0.843 28 H -0.192 1.192 29 H -0.198 1.198 30 H 0.172 0.828 31 H 0.184 0.816 32 H 0.178 0.822 33 H 0.181 0.819 34 H 0.255 0.745 35 H 0.093 0.907 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.124 0.876 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -1.261 -1.534 0.926 2.192 hybrid contribution -1.591 -1.382 -0.209 2.118 sum -2.852 -2.917 0.717 4.142 Atomic orbital electron populations 1.86600 1.17807 1.80189 1.50131 1.24452 0.83361 1.10051 0.96693 0.94468 0.91046 0.73913 0.79460 1.25097 1.07042 0.99253 1.02202 1.20193 1.01287 0.94895 0.97697 1.20641 0.97736 1.01318 0.94916 1.23177 1.06676 0.98153 0.99705 1.18463 0.95056 0.94630 0.91371 1.21201 0.99992 0.96382 0.95271 1.21262 0.93799 0.98629 0.94868 1.20033 1.03119 0.96262 0.96093 1.18535 0.79697 0.82679 0.84486 1.90780 1.44553 1.43913 1.67097 1.45794 1.52707 1.12924 1.23761 1.22538 0.95985 0.97873 0.82613 0.88615 1.23336 1.03158 0.94978 0.95370 1.22945 1.00140 0.96266 0.96740 0.88095 1.22156 0.92707 0.80245 1.03626 1.92745 1.77344 1.53522 1.98164 1.23424 0.99166 0.98333 0.96393 1.20947 0.96618 0.96566 0.94173 1.21032 0.98309 0.99354 0.96063 1.84222 1.48926 1.12979 1.14930 0.76279 0.84271 1.19203 1.19765 0.82802 0.81589 0.82155 0.81949 0.74504 0.90651 0.87600 0.88763 0.89472 0.87636 0.91028 0.85377 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.54 -0.39 12.86 -148.98 -1.92 -2.31 16 2 C -0.03 0.06 2.96 71.24 0.21 0.27 16 3 Si 0.71 -1.03 30.96 68.60 2.12 1.09 16 4 C -0.22 0.26 5.73 24.67 0.14 0.40 16 5 C -0.11 0.21 10.00 21.15 0.21 0.42 16 6 C -0.12 0.32 9.64 21.42 0.21 0.53 16 7 C -0.16 0.08 6.37 23.98 0.15 0.23 16 8 C 0.01 0.00 5.88 -20.05 -0.12 -0.12 16 9 C -0.11 0.48 9.48 22.26 0.21 0.69 16 10 C -0.07 0.32 9.48 22.27 0.21 0.53 16 11 C -0.15 -0.27 5.88 -20.05 -0.12 -0.39 16 12 C 0.56 2.76 7.76 86.70 0.67 3.43 16 13 O -0.58 -8.15 15.93 -4.02 -0.06 -8.22 16 14 N -0.70 1.61 5.30 -443.19 -2.35 -0.74 16 15 C 0.11 -0.18 4.24 45.52 0.19 0.01 16 16 H 0.10 0.34 7.46 -2.39 -0.02 0.33 16 17 C -0.13 0.62 7.26 31.12 0.23 0.85 16 18 C -0.14 0.67 4.13 -10.27 -0.04 0.63 16 19 H 0.10 -0.38 8.14 -2.39 -0.02 -0.40 16 20 C 0.07 -0.34 7.40 71.98 0.53 0.20 16 21 F -0.24 -0.60 17.22 44.97 0.77 0.17 16 22 C -0.13 0.62 7.43 31.12 0.23 0.85 16 23 C -0.06 -0.24 9.53 22.26 0.21 -0.03 16 24 C -0.13 -0.20 9.54 22.26 0.21 0.01 16 25 S 0.12 -0.06 19.46 -56.49 -1.10 -1.16 16 26 H 0.39 -1.71 8.70 -74.06 -0.64 -2.36 16 27 H 0.14 -0.59 7.96 -2.39 -0.02 -0.61 16 28 H -0.27 -0.72 7.11 99.48 0.71 -0.02 16 29 H -0.27 -1.28 7.11 99.48 0.71 -0.58 16 30 H 0.15 -0.58 8.06 -2.91 -0.02 -0.60 16 31 H 0.17 -1.30 6.88 -2.91 -0.02 -1.32 16 32 H 0.16 -1.60 6.74 -2.91 -0.02 -1.62 16 33 H 0.16 -1.98 6.38 -2.91 -0.02 -2.00 16 34 H 0.42 -3.81 6.74 -92.70 -0.62 -4.43 16 35 H 0.07 -0.24 8.14 -2.39 -0.02 -0.26 16 36 H 0.11 -0.84 8.08 -2.39 -0.02 -0.86 16 37 H 0.09 -0.83 7.94 -2.39 -0.02 -0.85 16 38 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 39 H 0.11 -0.81 7.96 -2.39 -0.02 -0.83 16 40 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 41 H 0.13 0.70 7.64 -2.91 -0.02 0.68 16 42 H 0.13 -0.02 7.26 -2.91 -0.02 -0.04 16 Total: 0.00 -19.89 369.02 0.66 -19.23 By element: Atomic # 1 Polarization: -16.43 SS G_CDS: -0.15 Total: -16.58 kcal Atomic # 6 Polarization: 5.17 SS G_CDS: 3.35 Total: 8.51 kcal Atomic # 7 Polarization: 1.61 SS G_CDS: -2.35 Total: -0.74 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -1.98 Total: -10.53 kcal Atomic # 9 Polarization: -0.60 SS G_CDS: 0.77 Total: 0.17 kcal Atomic # 14 Polarization: -1.03 SS G_CDS: 2.12 Total: 1.09 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -1.10 Total: -1.16 kcal Total: -19.89 0.66 -19.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_13308390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.776 kcal (2) G-P(sol) polarization free energy of solvation -19.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds