Wall clock time and date at job start Tue Mar 9 2021 13:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42903 * 1 3 3 Si 1.86300 * 109.47030 * 2 1 4 4 C 1.50696 * 109.47278 * 239.99675 * 2 1 3 5 5 C 1.38268 * 119.94238 * 119.72540 * 4 2 1 6 6 C 1.38148 * 120.05255 * 179.72402 * 5 4 2 7 7 C 1.38730 * 119.94247 * 0.57453 * 6 5 4 8 8 O 1.35905 * 120.05113 * 179.68140 * 7 6 5 9 9 C 1.42894 * 117.00217 * 0.02562 * 8 7 6 10 10 F 1.39900 * 109.47192 * 299.99842 * 9 8 7 11 11 F 1.39902 * 109.47344 * 60.00006 * 9 8 7 12 12 C 1.50699 * 109.47024 * 180.02562 * 9 8 7 13 13 O 1.21280 * 120.00103 * 359.97438 * 12 9 8 14 14 N 1.34783 * 120.00035 * 179.97438 * 12 9 8 15 15 C 1.46501 * 119.99886 * 180.02562 * 14 12 9 16 16 H 1.09003 * 112.84753 * 336.19149 * 15 14 12 17 17 C 1.53771 * 113.61633 * 107.50126 * 15 14 12 18 18 C 1.53781 * 87.08427 * 139.97925 * 17 15 14 19 19 H 1.09000 * 113.61879 * 89.11373 * 18 17 15 20 20 C 1.52997 * 113.69385 * 220.01318 * 18 17 15 21 21 F 1.39902 * 109.46713 * 277.53030 * 20 18 17 22 22 C 1.53780 * 113.61046 * 205.00161 * 15 14 12 23 23 C 1.38728 * 119.89348 * 359.69988 * 7 6 5 24 24 C 1.38153 * 119.93918 * 0.02562 * 23 7 6 25 25 H 0.96700 * 114.00022 * 300.00827 * 1 2 3 26 26 H 1.08997 * 109.46978 * 119.99554 * 2 1 3 27 27 H 1.48506 * 110.00048 * 178.68200 * 3 2 1 28 28 H 1.48502 * 109.99996 * 299.99525 * 3 2 1 29 29 H 1.07998 * 119.97204 * 359.97438 * 5 4 2 30 30 H 1.08000 * 120.02468 * 180.29669 * 6 5 4 31 31 H 0.97000 * 119.99661 * 359.97438 * 14 12 9 32 32 H 1.09004 * 113.61575 * 254.52963 * 17 15 14 33 33 H 1.09007 * 113.61813 * 25.43192 * 17 15 14 34 34 H 1.08999 * 109.47462 * 37.52632 * 20 18 17 35 35 H 1.09003 * 109.47631 * 157.53340 * 20 18 17 36 36 H 1.08995 * 113.61871 * 334.56223 * 22 15 14 37 37 H 1.09003 * 113.61793 * 105.38395 * 22 15 14 38 38 H 1.07991 * 120.03062 * 180.02562 * 23 7 6 39 39 H 1.08000 * 119.96925 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9314 -0.7105 -1.2304 5 6 2.7216 -0.0357 -2.1426 6 6 3.1880 -0.6864 -3.2684 7 6 2.8532 -2.0145 -3.4893 8 8 3.3055 -2.6549 -4.5994 9 6 4.1222 -1.8998 -5.4965 10 9 3.4017 -0.7965 -5.9664 11 9 5.2670 -1.4575 -4.8250 12 6 4.5257 -2.7682 -6.6601 13 8 4.1513 -3.9204 -6.7155 14 7 5.3028 -2.2643 -7.6394 15 6 5.6946 -3.1084 -8.7709 16 1 5.6691 -4.1721 -8.5342 17 6 4.9785 -2.7501 -10.0837 18 6 6.3219 -2.9939 -10.7914 19 1 6.4674 -4.0266 -11.1084 20 6 6.6252 -1.9838 -11.8997 21 9 5.9699 -2.3694 -13.0741 22 6 6.9987 -2.6598 -9.4514 23 6 2.0556 -2.6876 -2.5754 24 6 1.5963 -2.0340 -1.4482 25 1 -0.3933 0.4418 0.7650 26 1 1.7923 -0.5138 0.8900 27 1 3.5346 1.7703 0.0321 28 1 1.5616 2.4679 -1.2086 29 1 2.9776 0.9996 -1.9728 30 1 3.8092 -0.1604 -3.9783 31 1 5.6019 -1.3426 -7.5953 32 1 4.2014 -3.4607 -10.3653 33 1 4.6427 -1.7141 -10.1294 34 1 6.2769 -0.9964 -11.5968 35 1 7.7002 -1.9511 -12.0775 36 1 7.2152 -1.5992 -9.3241 37 1 7.8528 -3.2967 -9.2213 38 1 1.7939 -3.7215 -2.7449 39 1 0.9750 -2.5575 -0.7366 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_4549640.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:00 Heat of formation + Delta-G solvation = -189.951637 kcal Electronic energy + Delta-G solvation = -28338.287560 eV Core-core repulsion = 23606.351709 eV Total energy + Delta-G solvation = -4731.935852 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.107 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.02068 -48.99247 -48.55761 -41.66206 -41.39567 -39.80646 -39.18191 -37.31360 -35.25735 -32.65865 -32.23451 -30.12524 -28.65040 -26.83291 -26.35370 -24.88510 -23.78003 -22.64269 -22.31019 -21.19695 -20.66060 -19.82183 -19.74355 -18.39587 -18.25762 -17.84741 -17.22603 -17.02499 -16.81760 -16.77284 -16.51641 -16.43883 -15.97226 -15.85600 -15.72170 -15.54548 -15.46966 -15.30331 -15.23743 -14.87159 -14.55549 -14.44097 -14.00669 -13.77695 -13.73915 -13.53907 -13.26298 -13.00723 -12.68174 -12.56750 -12.27190 -12.13904 -11.98180 -11.66134 -11.58951 -11.28967 -10.53422 -10.38158 -10.33865 -9.68553 -4.96679 -0.13281 -0.02639 0.36107 0.52135 1.28123 1.55154 1.62105 1.89636 1.94932 2.29299 2.67460 3.09164 3.24926 3.26124 3.31694 3.39678 3.50400 3.57250 3.60851 3.81175 3.91573 4.03756 4.08318 4.18343 4.22251 4.24245 4.44695 4.49990 4.61131 4.63324 4.66066 4.69632 4.76247 4.79560 4.86414 4.97124 5.03779 5.19272 5.23789 5.34010 5.67427 5.77159 6.36881 6.91038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.563 6.563 2 C -0.074 4.074 3 Si 0.771 3.229 4 C -0.109 4.109 5 C -0.100 4.100 6 C -0.193 4.193 7 C 0.086 3.914 8 O -0.302 6.302 9 C 0.431 3.569 10 F -0.173 7.173 11 F -0.171 7.171 12 C 0.518 3.482 13 O -0.507 6.507 14 N -0.674 5.674 15 C 0.112 3.888 16 H 0.112 0.888 17 C -0.149 4.149 18 C -0.139 4.139 19 H 0.104 0.896 20 C 0.065 3.935 21 F -0.240 7.240 22 C -0.118 4.118 23 C -0.130 4.130 24 C -0.053 4.053 25 H 0.405 0.595 26 H 0.102 0.898 27 H -0.287 1.287 28 H -0.299 1.299 29 H 0.128 0.872 30 H 0.139 0.861 31 H 0.424 0.576 32 H 0.067 0.933 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.155 0.845 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 4.276 3.559 6.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.373 6.373 2 C -0.184 4.184 3 Si 0.678 3.322 4 C -0.109 4.109 5 C -0.118 4.118 6 C -0.212 4.212 7 C 0.043 3.957 8 O -0.219 6.219 9 C 0.354 3.646 10 F -0.155 7.155 11 F -0.153 7.153 12 C 0.296 3.704 13 O -0.380 6.380 14 N -0.327 5.327 15 C 0.009 3.991 16 H 0.130 0.870 17 C -0.188 4.188 18 C -0.158 4.158 19 H 0.123 0.877 20 C 0.011 3.989 21 F -0.222 7.222 22 C -0.156 4.156 23 C -0.149 4.149 24 C -0.071 4.071 25 H 0.257 0.743 26 H 0.120 0.880 27 H -0.215 1.215 28 H -0.227 1.227 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.263 0.737 32 H 0.085 0.915 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.172 0.828 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.337 3.559 2.476 5.471 hybrid contribution 0.174 0.187 -0.423 0.494 sum 3.512 3.746 2.053 5.529 Atomic orbital electron populations 1.86437 1.16927 1.82407 1.51541 1.24739 0.86089 1.10720 0.96860 0.94395 0.77345 0.75617 0.84851 1.19811 0.99044 0.95189 0.96889 1.20831 0.98083 0.99162 0.93697 1.21505 1.04970 0.93754 1.00962 1.19185 0.97503 0.92066 0.86919 1.86646 1.63966 1.39169 1.32108 1.21910 0.76678 0.79518 0.86532 1.93192 1.78268 1.55526 1.88492 1.93192 1.50563 1.89884 1.81649 1.19397 0.81127 0.87067 0.82778 1.90854 1.53485 1.17281 1.76412 1.45824 1.48803 1.17176 1.20895 1.22929 0.97425 0.96213 0.82552 0.87038 1.23615 0.97437 1.03472 0.94227 1.22938 0.97007 1.01318 0.94579 0.87739 1.22234 0.98326 0.98521 0.79848 1.92744 1.84213 1.93239 1.51982 1.23323 0.95794 1.04498 0.91953 1.20831 0.98595 1.01979 0.93472 1.21156 0.96528 0.93397 0.96018 0.74325 0.87991 1.21470 1.22661 0.85512 0.84331 0.73698 0.91463 0.88090 0.88958 0.88632 0.86527 0.88536 0.82772 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 0.76 12.74 -148.98 -1.90 -1.14 16 2 C -0.07 0.10 2.81 71.23 0.20 0.30 16 3 Si 0.77 -1.80 29.78 68.60 2.04 0.25 16 4 C -0.11 -0.55 5.42 -19.85 -0.11 -0.66 16 5 C -0.10 -0.72 8.66 22.26 0.19 -0.52 16 6 C -0.19 -1.60 8.26 22.37 0.18 -1.42 16 7 C 0.09 0.81 6.48 22.50 0.15 0.95 16 8 O -0.30 -3.22 9.60 -73.44 -0.71 -3.93 16 9 C 0.43 2.61 2.05 71.24 0.15 2.76 16 10 F -0.17 -0.86 15.29 44.97 0.69 -0.17 16 11 F -0.17 -0.73 15.29 44.97 0.69 -0.04 16 12 C 0.52 2.74 7.34 87.66 0.64 3.39 16 13 O -0.51 -6.40 16.10 16.01 0.26 -6.15 16 14 N -0.67 1.88 5.35 -440.04 -2.36 -0.47 16 15 C 0.11 -0.44 4.24 45.51 0.19 -0.25 16 16 H 0.11 -0.05 7.46 -2.39 -0.02 -0.07 16 17 C -0.15 0.59 7.43 31.12 0.23 0.83 16 18 C -0.14 0.90 4.09 -10.27 -0.04 0.85 16 19 H 0.10 -0.54 8.14 -2.39 -0.02 -0.56 16 20 C 0.07 -0.38 7.35 71.98 0.53 0.15 16 21 F -0.24 -0.80 17.36 44.97 0.78 -0.02 16 22 C -0.12 1.15 7.39 31.12 0.23 1.38 16 23 C -0.13 -0.82 9.99 22.37 0.22 -0.60 16 24 C -0.05 -0.22 9.60 22.25 0.21 0.00 16 25 H 0.41 -4.84 8.74 -74.06 -0.65 -5.49 16 26 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 27 H -0.29 -0.86 7.11 99.48 0.71 -0.15 16 28 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 29 H 0.13 0.71 4.87 -2.91 -0.01 0.69 16 30 H 0.14 0.87 5.10 -2.91 -0.01 0.86 16 31 H 0.42 -3.67 8.73 -92.71 -0.81 -4.48 16 32 H 0.07 -0.03 8.14 -2.38 -0.02 -0.05 16 33 H 0.10 -0.58 7.97 -2.38 -0.02 -0.60 16 34 H 0.09 -0.84 7.95 -2.39 -0.02 -0.86 16 35 H 0.10 -0.87 8.14 -2.39 -0.02 -0.89 16 36 H 0.12 -1.60 8.08 -2.39 -0.02 -1.62 16 37 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 38 H 0.15 0.47 8.06 -2.92 -0.02 0.45 16 39 H 0.16 -0.10 8.06 -2.91 -0.02 -0.12 16 Total: 0.00 -22.28 342.42 2.19 -20.09 By element: Atomic # 1 Polarization: -15.28 SS G_CDS: -0.29 Total: -15.57 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 2.98 Total: 7.16 kcal Atomic # 7 Polarization: 1.88 SS G_CDS: -2.36 Total: -0.47 kcal Atomic # 8 Polarization: -8.87 SS G_CDS: -2.35 Total: -11.22 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 2.16 Total: -0.24 kcal Atomic # 14 Polarization: -1.80 SS G_CDS: 2.04 Total: 0.25 kcal Total: -22.28 2.19 -20.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_4549640.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.864 kcal (2) G-P(sol) polarization free energy of solvation -22.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds