Wall clock time and date at job start Tue Mar 9 2021 13:11:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35992 * 117.00044 * 2 1 4 4 C 1.39158 * 120.07380 * 180.02562 * 3 2 1 5 5 O 1.35989 * 120.07062 * 0.02562 * 4 3 2 6 6 C 1.42904 * 117.00003 * 179.97438 * 5 4 3 7 7 C 1.50698 * 109.47209 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00119 * 0.02562 * 7 6 5 9 9 N 1.34780 * 120.00142 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00267 * 180.02562 * 9 7 6 11 11 H 1.09007 * 112.84877 * 336.19174 * 10 9 7 12 12 C 1.53780 * 113.61566 * 107.50227 * 10 9 7 13 13 C 1.53781 * 87.07885 * 139.98217 * 12 10 9 14 14 H 1.09001 * 113.69468 * 89.12832 * 13 12 10 15 15 C 1.52998 * 113.61221 * 220.01603 * 13 12 10 16 16 F 1.39904 * 109.47587 * 277.49528 * 15 13 12 17 17 C 1.53778 * 87.08411 * 334.56681 * 13 12 10 18 18 C 1.38566 * 119.85189 * 179.97438 * 4 3 2 19 19 C 1.38242 * 120.00253 * 359.97438 * 18 4 3 20 20 C 1.38249 * 120.14424 * 0.02620 * 19 18 4 21 21 C 1.50693 * 119.92305 * 179.97438 * 20 19 18 22 22 O 1.42907 * 109.47661 * 119.99735 * 21 20 19 23 23 Si 1.86298 * 109.47618 * 359.97438 * 21 20 19 24 24 C 1.38238 * 120.14735 * 0.22609 * 20 19 18 25 25 H 1.09000 * 109.46933 * 60.00512 * 1 2 3 26 26 H 1.08997 * 109.47269 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47227 * 300.01021 * 1 2 3 28 28 H 1.08997 * 109.47111 * 300.00217 * 6 5 4 29 29 H 1.08996 * 109.47140 * 60.00090 * 6 5 4 30 30 H 0.97000 * 119.99452 * 0.02562 * 9 7 6 31 31 H 1.08998 * 113.61350 * 254.52739 * 12 10 9 32 32 H 1.08999 * 113.61564 * 25.43406 * 12 10 9 33 33 H 1.08998 * 109.47162 * 37.49747 * 15 13 12 34 34 H 1.09005 * 109.47116 * 157.49529 * 15 13 12 35 35 H 1.09002 * 113.61322 * 270.88938 * 17 13 12 36 36 H 1.08997 * 113.69491 * 139.99511 * 17 13 12 37 37 H 1.08007 * 119.99707 * 180.02562 * 18 4 3 38 38 H 1.07996 * 119.92316 * 180.02562 * 19 18 4 39 39 H 1.09000 * 109.46936 * 239.99359 * 21 20 19 40 40 H 0.96697 * 114.00527 * 179.97438 * 22 21 20 41 41 H 1.48506 * 109.99834 * 298.68714 * 23 21 20 42 42 H 1.48502 * 110.00011 * 59.99978 * 23 21 20 43 43 H 1.08008 * 119.99836 * 179.74773 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1795 0.1477 -0.0016 6 6 5.6003 0.3006 -0.0027 7 6 6.2518 -1.0582 -0.0031 8 8 5.5669 -2.0592 -0.0030 9 7 7.5957 -1.1613 -0.0046 10 6 8.2291 -2.4823 -0.0056 11 1 7.5838 -3.2614 0.4005 12 6 8.8760 -2.8543 -1.3502 13 6 10.0313 -3.4613 -0.5368 14 1 9.8807 -4.5090 -0.2765 15 6 11.4121 -3.1911 -1.1377 16 9 11.6719 -4.1238 -2.1476 17 6 9.6476 -2.4857 0.5883 18 6 4.0603 2.5234 -0.0011 19 6 3.3029 3.6799 -0.0016 20 6 1.9224 3.6057 -0.0011 21 6 1.1017 4.8696 -0.0011 22 8 0.2769 4.9021 -1.1676 23 14 2.2365 6.3471 -0.0011 24 6 1.2933 2.3748 0.0047 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5140 0.8899 28 1 5.9058 0.8508 -0.8926 29 1 5.9073 0.8500 0.8873 30 1 8.1434 -0.3608 -0.0051 31 1 8.3084 -3.5907 -1.9189 32 1 9.1690 -1.9908 -1.9475 33 1 11.4353 -2.1854 -1.5574 34 1 12.1704 -3.2776 -0.3594 35 1 10.1514 -1.5215 0.5210 36 1 9.7025 -2.9233 1.5851 37 1 5.1386 2.5840 -0.0019 38 1 3.7908 4.6433 -0.0024 39 1 0.4732 4.8946 0.8891 40 1 -0.2804 5.6895 -1.2335 41 1 3.0772 6.3418 1.2231 42 1 3.0992 6.3249 -1.2096 43 1 0.2146 2.3197 0.0093 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_60476.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:16 Heat of formation + Delta-G solvation = -132.278270 kcal Electronic energy + Delta-G solvation = -27040.756332 eV Core-core repulsion = 22776.009526 eV Total energy + Delta-G solvation = -4264.746807 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 326.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.55864 -41.94582 -41.23643 -39.91072 -39.11693 -38.75325 -37.05003 -34.89296 -32.25599 -31.62989 -30.29850 -28.84736 -28.43874 -26.77406 -26.21033 -24.20022 -23.28997 -22.46310 -21.76545 -20.78320 -19.85709 -18.59150 -18.43082 -18.19940 -17.72963 -17.59686 -17.42852 -16.97698 -16.79590 -16.66160 -16.35516 -15.99862 -15.87280 -15.67766 -15.57570 -15.42561 -14.99951 -14.43032 -14.21658 -14.05436 -13.78734 -13.60618 -13.51313 -13.47319 -12.93425 -12.83660 -12.57170 -12.41721 -12.33275 -12.26649 -12.12344 -12.04453 -11.84271 -11.54779 -11.31697 -11.01933 -10.32747 -10.19640 -9.90188 -9.03865 -4.89859 0.03351 0.09749 1.32208 1.34991 1.39786 1.68437 1.99140 2.20839 2.39508 2.48673 3.32281 3.34613 3.38001 3.43504 3.60307 3.65133 3.69400 3.72560 3.83260 3.90412 4.00561 4.08854 4.09845 4.15413 4.20066 4.25687 4.26553 4.28130 4.46168 4.48842 4.57289 4.62884 4.65838 4.75063 4.77660 4.84570 4.92063 4.94718 5.01460 5.18629 5.22220 5.41835 5.47355 5.85392 6.33158 6.43756 6.91323 7.06629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.332 6.332 3 C 0.083 3.917 4 C 0.084 3.916 5 O -0.311 6.311 6 C 0.033 3.967 7 C 0.513 3.487 8 O -0.573 6.573 9 N -0.697 5.697 10 C 0.115 3.885 11 H 0.091 0.909 12 C -0.149 4.149 13 C -0.142 4.142 14 H 0.096 0.904 15 C 0.067 3.933 16 F -0.242 7.242 17 C -0.116 4.116 18 C -0.160 4.160 19 C -0.134 4.134 20 C -0.085 4.085 21 C -0.081 4.081 22 O -0.565 6.565 23 Si 0.779 3.221 24 C -0.147 4.147 25 H 0.064 0.936 26 H 0.114 0.886 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.127 0.873 30 H 0.423 0.577 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.088 0.912 37 H 0.173 0.827 38 H 0.133 0.867 39 H 0.094 0.906 40 H 0.404 0.596 41 H -0.283 1.283 42 H -0.293 1.293 43 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 9.595 3.070 10.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.246 6.246 3 C 0.037 3.963 4 C 0.039 3.961 5 O -0.224 6.224 6 C -0.045 4.045 7 C 0.299 3.701 8 O -0.451 6.451 9 N -0.351 5.351 10 C 0.010 3.990 11 H 0.109 0.891 12 C -0.187 4.187 13 C -0.162 4.162 14 H 0.114 0.886 15 C 0.012 3.988 16 F -0.223 7.223 17 C -0.154 4.154 18 C -0.178 4.178 19 C -0.151 4.151 20 C -0.085 4.085 21 C -0.191 4.191 22 O -0.375 6.375 23 Si 0.684 3.316 24 C -0.166 4.166 25 H 0.083 0.917 26 H 0.132 0.868 27 H 0.087 0.913 28 H 0.142 0.858 29 H 0.145 0.855 30 H 0.262 0.738 31 H 0.073 0.927 32 H 0.121 0.879 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.138 0.862 36 H 0.106 0.894 37 H 0.190 0.810 38 H 0.150 0.850 39 H 0.112 0.888 40 H 0.255 0.745 41 H -0.210 1.210 42 H -0.221 1.221 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.650 8.180 2.955 9.092 hybrid contribution -0.140 -0.592 -0.121 0.620 sum 2.509 7.588 2.834 8.479 Atomic orbital electron populations 1.23344 0.76461 1.05460 1.02329 1.86197 1.23347 1.26161 1.88890 1.18664 0.89776 0.85845 1.01968 1.18493 0.88421 0.86232 1.02956 1.86226 1.18257 1.28670 1.89292 1.22799 0.79360 0.95488 1.06849 1.20551 0.83352 0.90609 0.75575 1.90772 1.64194 1.40140 1.50019 1.45652 1.04901 1.10144 1.74381 1.22513 0.93642 0.85148 0.97654 0.89094 1.23586 0.96813 1.01407 0.96927 1.22945 0.94298 1.00986 0.97949 0.88561 1.22239 0.96885 0.91354 0.88315 1.92740 1.95454 1.69678 1.64418 1.23272 0.92684 1.00950 0.98446 1.21264 1.02035 0.89440 1.05054 1.20799 0.93218 0.98234 1.02895 1.19501 0.93435 0.94523 1.01078 1.24894 1.00392 1.02173 0.91595 1.86442 1.59285 1.49574 1.42239 0.94267 0.78640 0.82141 0.76576 1.21064 1.00960 0.90053 1.04514 0.91742 0.86819 0.91283 0.85835 0.85512 0.73830 0.92664 0.87914 0.88692 0.88693 0.86233 0.89372 0.80996 0.85003 0.88829 0.74492 1.20962 1.22110 0.83000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 113.37 1.11 1.17 16 2 O -0.33 -4.22 10.28 -79.60 -0.82 -5.04 16 3 C 0.08 0.91 6.70 22.57 0.15 1.06 16 4 C 0.08 0.78 6.70 22.57 0.15 0.93 16 5 O -0.31 -3.51 9.45 -67.02 -0.63 -4.15 16 6 C 0.03 0.00 5.22 71.24 0.37 0.37 16 7 C 0.51 2.68 7.91 87.66 0.69 3.37 16 8 O -0.57 -10.21 16.10 15.99 0.26 -9.95 16 9 N -0.70 2.37 5.35 -440.03 -2.36 0.02 16 10 C 0.12 -0.16 4.24 45.52 0.19 0.03 16 11 H 0.09 0.45 7.47 -2.38 -0.02 0.43 16 12 C -0.15 0.23 7.43 31.12 0.23 0.46 16 13 C -0.14 0.59 4.10 -10.27 -0.04 0.54 16 14 H 0.10 -0.18 8.14 -2.39 -0.02 -0.20 16 15 C 0.07 -0.31 7.35 71.98 0.53 0.22 16 16 F -0.24 -1.13 17.36 44.97 0.78 -0.35 16 17 C -0.12 0.92 7.39 31.12 0.23 1.15 16 18 C -0.16 -0.48 9.04 22.35 0.20 -0.28 16 19 C -0.13 -0.55 8.66 22.27 0.19 -0.36 16 20 C -0.08 -0.43 5.42 -19.86 -0.11 -0.54 16 21 C -0.08 0.10 2.81 71.23 0.20 0.30 16 22 O -0.57 0.46 12.75 -148.98 -1.90 -1.44 16 23 Si 0.78 -2.97 29.78 68.60 2.04 -0.93 16 24 C -0.15 -1.01 8.60 22.35 0.19 -0.82 16 25 H 0.06 0.08 7.67 -2.39 -0.02 0.06 16 26 H 0.11 0.02 8.14 -2.39 -0.02 0.00 16 27 H 0.07 -0.01 7.65 -2.39 -0.02 -0.02 16 28 H 0.12 -0.80 7.66 -2.39 -0.02 -0.81 16 29 H 0.13 -0.90 7.66 -2.39 -0.02 -0.92 16 30 H 0.42 -5.08 8.73 -92.71 -0.81 -5.89 16 31 H 0.05 0.18 8.14 -2.39 -0.02 0.16 16 32 H 0.10 -0.46 7.96 -2.39 -0.02 -0.48 16 33 H 0.09 -0.81 7.94 -2.39 -0.02 -0.83 16 34 H 0.09 -0.76 8.14 -2.38 -0.02 -0.78 16 35 H 0.12 -1.58 8.08 -2.39 -0.02 -1.60 16 36 H 0.09 -0.70 8.14 -2.39 -0.02 -0.72 16 37 H 0.17 -0.91 6.30 -2.91 -0.02 -0.93 16 38 H 0.13 0.20 4.87 -2.91 -0.01 0.19 16 39 H 0.09 -0.48 7.96 -2.39 -0.02 -0.50 16 40 H 0.40 -4.66 8.74 -74.06 -0.65 -5.31 16 41 H -0.28 -0.20 7.11 99.48 0.71 0.51 16 42 H -0.29 -0.98 7.11 99.48 0.71 -0.27 16 43 H 0.15 0.52 6.30 -2.91 -0.02 0.50 16 Total: 0.00 -32.97 362.38 1.32 -31.65 By element: Atomic # 1 Polarization: -17.06 SS G_CDS: -0.36 Total: -17.42 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 4.30 Total: 7.61 kcal Atomic # 7 Polarization: 2.37 SS G_CDS: -2.36 Total: 0.02 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -3.09 Total: -20.58 kcal Atomic # 9 Polarization: -1.13 SS G_CDS: 0.78 Total: -0.35 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.04 Total: -0.93 kcal Total: -32.97 1.32 -31.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_60476.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.625 kcal (2) G-P(sol) polarization free energy of solvation -32.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds