Wall clock time and date at job start Tue Mar 9 2021 13:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42907 * 1 3 3 Si 1.86298 * 109.46858 * 2 1 4 4 C 1.50693 * 109.47661 * 239.99225 * 2 1 3 5 5 C 1.38237 * 119.94208 * 300.00368 * 4 2 1 6 6 C 1.38193 * 120.07646 * 179.97438 * 5 4 2 7 7 C 1.38665 * 119.95605 * 0.02562 * 6 5 4 8 8 O 1.35928 * 120.05918 * 179.97438 * 7 6 5 9 9 C 1.42902 * 116.99439 * 359.97438 * 8 7 6 10 10 C 1.53005 * 109.46613 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.46963 * 179.97438 * 10 9 8 12 12 C 1.34817 * 126.59070 * 124.99953 * 11 10 9 13 13 C 1.36599 * 106.83742 * 179.97438 * 12 11 10 14 14 C 1.47518 * 125.77128 * 180.02562 * 13 12 11 15 15 O 1.21594 * 120.00262 * 359.97438 * 14 13 12 16 16 N 1.34783 * 120.00000 * 179.97438 * 14 13 12 17 17 C 1.46499 * 120.00105 * 180.02562 * 16 14 13 18 18 H 1.09005 * 112.84500 * 336.19178 * 17 16 14 19 19 C 1.53778 * 113.61600 * 107.50116 * 17 16 14 20 20 C 1.53786 * 87.07768 * 139.98243 * 19 17 16 21 21 H 1.08998 * 113.61100 * 89.12300 * 20 19 17 22 22 C 1.52999 * 113.68828 * 220.00641 * 20 19 17 23 23 F 1.39897 * 109.47299 * 162.53307 * 22 20 19 24 24 C 1.53779 * 113.61351 * 205.00433 * 17 16 14 25 25 N 1.34401 * 108.45774 * 0.02562 * 13 12 11 26 26 N 1.28759 * 109.52635 * 359.74605 * 25 13 12 27 27 C 1.38853 * 119.88532 * 359.97438 * 7 6 5 28 28 Cl 1.73599 * 120.04224 * 180.02562 * 27 7 6 29 29 C 1.38221 * 119.91936 * 359.71097 * 27 7 6 30 30 H 0.96697 * 114.00527 * 300.00583 * 1 2 3 31 31 H 1.09000 * 109.46638 * 119.99419 * 2 1 3 32 32 H 1.48506 * 109.99834 * 178.67912 * 3 2 1 33 33 H 1.48502 * 110.00011 * 299.99177 * 3 2 1 34 34 H 1.07999 * 119.96012 * 0.02562 * 5 4 2 35 35 H 1.07997 * 120.01866 * 180.02562 * 6 5 4 36 36 H 1.08995 * 109.47486 * 299.99493 * 9 8 7 37 37 H 1.08994 * 109.47492 * 60.00495 * 9 8 7 38 38 H 1.09000 * 109.47323 * 300.00019 * 10 9 8 39 39 H 1.09004 * 109.47090 * 59.99914 * 10 9 8 40 40 H 1.07991 * 126.58550 * 359.97438 * 12 11 10 41 41 H 0.96999 * 119.99949 * 0.02562 * 16 14 13 42 42 H 1.08999 * 113.61354 * 254.52730 * 19 17 16 43 43 H 1.08999 * 113.61279 * 25.43323 * 19 17 16 44 44 H 1.08996 * 109.47482 * 282.54170 * 22 20 19 45 45 H 1.09002 * 109.47218 * 42.54102 * 22 20 19 46 46 H 1.09004 * 113.61276 * 334.56170 * 24 17 16 47 47 H 1.08998 * 113.61893 * 105.38785 * 24 17 16 48 48 H 1.07996 * 119.97928 * 180.28938 * 29 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4291 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9315 -0.7105 -1.2303 5 6 1.5968 -2.0340 -1.4477 6 6 2.0556 -2.6881 -2.5753 7 6 2.8531 -2.0162 -3.4892 8 8 3.3059 -2.6577 -4.5988 9 6 2.9220 -4.0247 -4.7597 10 6 3.5223 -4.5738 -6.0555 11 7 3.1292 -5.9754 -6.2203 12 6 2.5068 -6.5154 -7.2874 13 6 2.3359 -7.8431 -7.0157 14 6 1.6964 -8.8302 -7.9062 15 8 1.2660 -8.4830 -8.9891 16 7 1.5893 -10.1169 -7.5194 17 6 0.9548 -11.0972 -8.4040 18 1 0.2662 -10.6418 -9.1157 19 6 1.9474 -12.0802 -9.0469 20 6 0.8943 -13.1757 -8.8102 21 1 0.1899 -13.2894 -9.6342 22 6 1.4868 -14.5081 -8.3470 23 9 0.4776 -15.2968 -7.7845 24 6 0.3616 -12.3052 -7.6599 25 7 2.8488 -8.0982 -5.7999 26 7 3.3325 -7.0142 -5.3008 27 6 3.1882 -0.6868 -3.2691 28 17 4.1857 0.1586 -4.4110 29 6 2.7212 -0.0354 -2.1430 30 1 -0.3934 0.4417 0.7649 31 1 1.7923 -0.5138 0.8901 32 1 3.5346 1.7703 0.0322 33 1 1.5616 2.4678 -1.2086 34 1 0.9754 -2.5571 -0.7360 35 1 1.7933 -3.7220 -2.7444 36 1 3.2887 -4.6071 -3.9146 37 1 1.8352 -4.0940 -4.8045 38 1 3.1560 -3.9915 -6.9010 39 1 4.6092 -4.5045 -6.0104 40 1 2.2018 -5.9977 -8.1847 41 1 1.9323 -10.3938 -6.6554 42 1 2.1396 -11.8798 -10.1009 43 1 2.8604 -12.2198 -8.4681 44 1 1.9218 -15.0285 -9.2002 45 1 2.2604 -14.3223 -7.6019 46 1 0.8412 -12.5064 -6.7019 47 1 -0.7261 -12.2858 -7.5929 48 1 2.9774 0.9999 -1.9732 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15744752_7143556.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:11:34 Heat of formation + Delta-G solvation = -3.204091 kcal Electronic energy + Delta-G solvation = -34315.018165 eV Core-core repulsion = 29122.719442 eV Total energy + Delta-G solvation = -5192.298723 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 411.119 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -48.52827 -43.40413 -41.63230 -41.03397 -39.50446 -39.26412 -37.86788 -37.19878 -36.22607 -34.70565 -32.62733 -32.33916 -32.04371 -30.77189 -29.32317 -26.78311 -26.70858 -25.83573 -25.35640 -24.14627 -23.07392 -22.89578 -22.40618 -21.53965 -20.77155 -19.89711 -18.98643 -18.42997 -17.90400 -17.72895 -17.54353 -17.44263 -17.07592 -17.01825 -16.96381 -16.69202 -16.34271 -16.01836 -15.88796 -15.76679 -15.66921 -15.50830 -15.15088 -15.04163 -14.77751 -14.70026 -14.23454 -14.01652 -13.90673 -13.54903 -13.48584 -13.37668 -13.24008 -13.06506 -12.75632 -12.64009 -12.60178 -12.49614 -12.42163 -12.18676 -12.08799 -11.86109 -11.81121 -11.54311 -11.51284 -11.39543 -11.18961 -10.54935 -10.36203 -10.21916 -10.07949 -9.44212 -4.99733 -0.18707 -0.10039 -0.02799 0.48706 0.65748 0.89632 1.26217 1.59693 1.85476 1.93457 2.03654 2.11610 2.22988 3.05149 3.12765 3.24701 3.35707 3.40289 3.42274 3.55560 3.60782 3.65938 3.69460 3.74392 3.78188 3.83967 3.90951 3.93241 3.99841 4.10895 4.13934 4.18522 4.26371 4.27988 4.37444 4.40221 4.54790 4.60593 4.64254 4.68321 4.70332 4.79219 4.85108 4.88216 4.98753 5.04613 5.14739 5.18389 5.22149 5.29806 5.50571 5.88818 6.32566 6.75646 6.89149 7.03955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.562 6.562 2 C -0.067 4.067 3 Si 0.759 3.241 4 C -0.111 4.111 5 C -0.044 4.044 6 C -0.189 4.189 7 C 0.139 3.861 8 O -0.304 6.304 9 C 0.045 3.955 10 C 0.124 3.876 11 N -0.351 5.351 12 C 0.119 3.881 13 C -0.124 4.124 14 C 0.607 3.393 15 O -0.567 6.567 16 N -0.697 5.697 17 C 0.117 3.883 18 H 0.107 0.893 19 C -0.134 4.134 20 C -0.139 4.139 21 H 0.106 0.894 22 C 0.066 3.934 23 F -0.237 7.237 24 C -0.134 4.134 25 N -0.214 5.214 26 N -0.082 5.082 27 C -0.078 4.078 28 Cl -0.058 7.058 29 C -0.095 4.095 30 H 0.406 0.594 31 H 0.104 0.896 32 H -0.287 1.287 33 H -0.298 1.298 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.150 0.850 39 H 0.124 0.876 40 H 0.237 0.763 41 H 0.416 0.584 42 H 0.078 0.922 43 H 0.099 0.901 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.078 0.922 48 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.181 1.497 4.246 4.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.372 6.372 2 C -0.177 4.177 3 Si 0.666 3.334 4 C -0.112 4.112 5 C -0.062 4.062 6 C -0.208 4.208 7 C 0.092 3.908 8 O -0.216 6.216 9 C -0.031 4.031 10 C 0.004 3.996 11 N -0.136 5.136 12 C -0.038 4.038 13 C -0.263 4.263 14 C 0.392 3.608 15 O -0.445 6.445 16 N -0.347 5.347 17 C 0.013 3.987 18 H 0.125 0.875 19 C -0.173 4.173 20 C -0.158 4.158 21 H 0.124 0.876 22 C 0.012 3.988 23 F -0.218 7.218 24 C -0.172 4.172 25 N -0.088 5.088 26 N -0.063 5.063 27 C -0.105 4.105 28 Cl -0.029 7.029 29 C -0.113 4.113 30 H 0.257 0.743 31 H 0.122 0.878 32 H -0.214 1.214 33 H -0.226 1.226 34 H 0.175 0.825 35 H 0.179 0.821 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.167 0.833 39 H 0.142 0.858 40 H 0.254 0.746 41 H 0.253 0.747 42 H 0.097 0.903 43 H 0.117 0.883 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.117 0.883 47 H 0.096 0.904 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.846 1.825 3.666 4.182 hybrid contribution -0.050 -0.142 -0.878 0.891 sum 0.796 1.683 2.788 3.352 Atomic orbital electron populations 1.86425 1.16815 1.82355 1.51615 1.24588 0.86123 1.10117 0.96897 0.94464 0.77634 0.76262 0.85078 1.19560 0.99594 0.95228 0.96780 1.21194 0.95591 0.93046 0.96354 1.21561 1.01406 1.02157 0.95655 1.18598 0.94571 0.90103 0.87487 1.85995 1.70552 1.25786 1.39275 1.23011 1.01063 0.80009 0.98982 1.21904 1.03788 0.73834 1.00094 1.50333 1.39779 1.10440 1.13072 1.23921 0.92318 0.93589 0.94012 1.21492 1.13955 0.95062 0.95789 1.16907 0.77568 0.82042 0.84272 1.90816 1.50599 1.80152 1.22971 1.45769 1.59589 1.07294 1.22048 1.22620 0.95947 0.86822 0.93344 0.87508 1.23403 0.97728 0.93756 1.02414 1.22939 0.99698 0.93383 0.99824 0.87602 1.22160 0.87700 0.89507 0.99467 1.92739 1.64638 1.76817 1.87621 1.23362 1.02017 0.93381 0.98483 1.74611 1.07199 1.19642 1.07389 1.81995 1.21842 0.89137 1.13276 1.20132 1.03488 0.91579 0.95322 1.98378 1.67872 1.77058 1.59576 1.20738 0.98528 0.99282 0.92739 0.74265 0.87788 1.21449 1.22563 0.82472 0.82086 0.89839 0.89912 0.83254 0.85821 0.74633 0.74726 0.90323 0.88279 0.89221 0.89238 0.88346 0.90365 0.85416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 1.70 12.74 -148.98 -1.90 -0.20 16 2 C -0.07 0.19 2.81 71.23 0.20 0.39 16 3 Si 0.76 -1.94 29.78 68.60 2.04 0.10 16 4 C -0.11 -0.27 5.42 -19.85 -0.11 -0.38 16 5 C -0.04 -0.01 9.60 22.26 0.21 0.21 16 6 C -0.19 0.07 9.04 22.36 0.20 0.27 16 7 C 0.14 0.38 6.68 22.52 0.15 0.53 16 8 O -0.30 0.05 9.60 -92.74 -0.89 -0.84 16 9 C 0.05 -0.25 4.95 71.98 0.36 0.10 16 10 C 0.12 -1.06 6.91 86.38 0.60 -0.47 16 11 N -0.35 1.15 3.69 -347.08 -1.28 -0.13 16 12 C 0.12 -0.35 11.27 83.85 0.95 0.60 16 13 C -0.12 -0.31 6.99 40.82 0.29 -0.02 16 14 C 0.61 2.82 7.82 86.69 0.68 3.49 16 15 O -0.57 -5.69 16.46 -4.01 -0.07 -5.75 16 16 N -0.70 -0.36 5.35 -443.21 -2.37 -2.73 16 17 C 0.12 -0.10 4.24 45.52 0.19 0.09 16 18 H 0.11 0.23 7.46 -2.38 -0.02 0.21 16 19 C -0.13 0.50 7.44 31.12 0.23 0.73 16 20 C -0.14 0.53 4.11 -10.27 -0.04 0.49 16 21 H 0.11 -0.39 8.14 -2.39 -0.02 -0.41 16 22 C 0.07 -0.23 7.33 71.98 0.53 0.30 16 23 F -0.24 -0.98 17.30 44.97 0.78 -0.20 16 24 C -0.13 0.41 7.34 31.12 0.23 0.64 16 25 N -0.21 -0.94 12.04 -50.00 -0.60 -1.54 16 26 N -0.08 -0.26 13.65 37.02 0.51 0.25 16 27 C -0.08 -0.46 6.33 22.41 0.14 -0.31 16 28 Cl -0.06 -0.36 28.51 -2.72 -0.08 -0.44 16 29 C -0.09 -0.52 8.45 22.28 0.19 -0.33 16 30 H 0.41 -5.38 8.74 -74.06 -0.65 -6.03 16 31 H 0.10 -0.81 7.96 -2.39 -0.02 -0.82 16 32 H -0.29 -0.90 7.11 99.48 0.71 -0.19 16 33 H -0.30 -1.68 7.11 99.48 0.71 -0.97 16 34 H 0.16 -0.59 8.06 -2.91 -0.02 -0.62 16 35 H 0.16 -0.80 6.30 -2.91 -0.02 -0.82 16 36 H 0.08 -0.41 7.66 -2.39 -0.02 -0.43 16 37 H 0.08 -0.56 7.66 -2.39 -0.02 -0.58 16 38 H 0.15 -2.06 8.08 -2.39 -0.02 -2.08 16 39 H 0.12 -1.18 8.14 -2.38 -0.02 -1.20 16 40 H 0.24 -2.24 8.06 -2.92 -0.02 -2.27 16 41 H 0.42 -0.81 8.41 -92.71 -0.78 -1.59 16 42 H 0.08 -0.23 8.14 -2.39 -0.02 -0.25 16 43 H 0.10 -0.52 8.04 -2.39 -0.02 -0.54 16 44 H 0.09 -0.53 8.14 -2.39 -0.02 -0.55 16 45 H 0.09 -0.56 8.06 -2.39 -0.02 -0.58 16 46 H 0.10 -0.44 8.08 -2.38 -0.02 -0.46 16 47 H 0.08 -0.17 8.14 -2.39 -0.02 -0.19 16 48 H 0.13 0.74 4.87 -2.91 -0.01 0.72 16 Total: 0.00 -25.56 428.22 0.79 -24.77 By element: Atomic # 1 Polarization: -19.29 SS G_CDS: -0.34 Total: -19.63 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 4.99 Total: 6.34 kcal Atomic # 7 Polarization: -0.40 SS G_CDS: -3.75 Total: -4.15 kcal Atomic # 8 Polarization: -3.93 SS G_CDS: -2.85 Total: -6.79 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.78 Total: -0.20 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.04 Total: 0.10 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.08 Total: -0.44 kcal Total: -25.56 0.79 -24.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15744752_7143556.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.570 kcal (2) G-P(sol) polarization free energy of solvation -25.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds