Wall clock time and date at job start Tue Mar 9 2021 13:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36423 * 125.80165 * 2 1 4 4 C 1.47378 * 127.19248 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99724 * 7.08813 * 4 3 2 6 6 N 1.34774 * 119.99847 * 187.09622 * 4 3 2 7 7 C 1.46495 * 120.00160 * 6.25804 * 6 4 3 8 8 C 1.46508 * 119.99463 * 186.26498 * 6 4 3 9 9 H 1.08992 * 109.47298 * 359.97438 * 8 6 4 10 10 C 1.52994 * 109.46915 * 119.99680 * 8 6 4 11 11 C 1.53008 * 109.46946 * 179.97438 * 10 8 6 12 12 C 1.53002 * 109.46994 * 299.99845 * 11 10 8 13 13 H 1.09004 * 109.47347 * 300.00237 * 12 11 10 14 14 C 1.50701 * 109.47215 * 179.97438 * 12 11 10 15 15 C 1.38232 * 119.99824 * 299.72648 * 14 12 11 16 16 C 1.38230 * 119.99794 * 179.76251 * 15 14 12 17 17 C 1.38227 * 120.00136 * 0.48986 * 16 15 14 18 18 C 1.38232 * 119.99987 * 359.78743 * 17 16 15 19 19 C 1.38229 * 120.00041 * 120.00066 * 14 12 11 20 20 C 1.52998 * 109.47021 * 59.99941 * 12 11 10 21 21 C 1.52999 * 109.47253 * 299.99933 * 20 12 11 22 22 C 1.47024 * 105.61724 * 179.73561 * 3 2 1 23 23 C 1.34186 * 105.95175 * 0.26239 * 22 3 2 24 24 C 1.50692 * 125.43698 * 179.97438 * 23 22 3 25 25 O 1.42904 * 109.47308 * 65.00075 * 24 23 22 26 26 Si 1.86305 * 109.47220 * 185.00200 * 24 23 22 27 27 O 1.33660 * 125.80415 * 180.18760 * 2 1 3 28 28 H 1.09000 * 109.47062 * 89.99612 * 1 2 3 29 29 H 1.09002 * 109.47098 * 209.99909 * 1 2 3 30 30 H 1.09003 * 109.46971 * 330.00190 * 1 2 3 31 31 H 1.09001 * 109.46938 * 275.86259 * 7 6 4 32 32 H 1.08993 * 109.47208 * 35.86605 * 7 6 4 33 33 H 1.09005 * 109.47016 * 155.86890 * 7 6 4 34 34 H 1.09004 * 109.47758 * 59.99813 * 10 8 6 35 35 H 1.08996 * 109.47641 * 299.99453 * 10 8 6 36 36 H 1.08992 * 109.47010 * 59.99844 * 11 10 8 37 37 H 1.08997 * 109.47285 * 180.02562 * 11 10 8 38 38 H 1.07998 * 120.00177 * 0.02562 * 15 14 12 39 39 H 1.08005 * 119.99975 * 180.25175 * 16 15 14 40 40 H 1.08006 * 120.00407 * 179.76528 * 17 16 15 41 41 H 1.08003 * 120.00270 * 179.97438 * 18 17 16 42 42 H 1.07997 * 120.00117 * 0.02562 * 19 14 12 43 43 H 1.08996 * 109.47607 * 60.00119 * 20 12 11 44 44 H 1.09004 * 109.47277 * 180.02562 * 20 12 11 45 45 H 1.09000 * 109.47692 * 180.02562 * 21 20 12 46 46 H 1.09004 * 109.47241 * 299.99781 * 21 20 12 47 47 H 1.07996 * 127.02680 * 180.23626 * 22 3 2 48 48 H 1.09003 * 109.47315 * 305.00318 * 24 23 22 49 49 H 0.96699 * 113.99694 * 60.00142 * 25 24 23 50 50 H 1.48499 * 109.99837 * 180.02562 * 26 24 23 51 51 H 1.48496 * 109.99679 * 301.31965 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.1065 0.0000 4 6 1.8740 2.5158 0.0005 5 8 0.6968 2.7915 0.1310 6 7 2.7845 3.4990 -0.1437 7 6 4.1807 3.1670 -0.4378 8 6 2.3778 4.8997 -0.0063 9 1 1.3107 4.9487 0.2100 10 6 3.1607 5.5482 1.1371 11 6 2.7364 7.0113 1.2803 12 6 3.0273 7.7565 -0.0239 13 1 4.0945 7.7071 -0.2404 14 6 2.6089 9.1974 0.1168 15 6 1.2902 9.5108 0.3881 16 6 0.9074 10.8323 0.5221 17 6 1.8412 11.8407 0.3747 18 6 3.1588 11.5276 0.0977 19 6 3.5427 10.2059 -0.0310 20 6 2.2445 7.1080 -1.1673 21 6 2.6687 5.6450 -1.3105 22 6 3.6850 0.5992 0.0065 23 6 3.5859 -0.7390 0.0039 24 6 4.7459 -1.7010 0.0080 25 8 5.4701 -1.5688 1.2328 26 14 4.1077 -3.4441 -0.1512 27 8 2.2889 -1.0840 -0.0035 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 4.7043 2.9428 0.4915 32 1 4.2169 2.2976 -1.0941 33 1 4.6596 4.0137 -0.9296 34 1 4.2279 5.4992 0.9205 35 1 2.9538 5.0170 2.0662 36 1 1.6694 7.0606 1.4967 37 1 3.2945 7.4734 2.0946 38 1 0.5598 8.7231 0.4996 39 1 -0.1222 11.0770 0.7381 40 1 1.5414 12.8734 0.4756 41 1 3.8884 12.3155 -0.0178 42 1 4.5720 9.9612 -0.2477 43 1 1.1773 7.1574 -0.9510 44 1 2.4520 7.6387 -2.0966 45 1 2.1113 5.1831 -2.1254 46 1 3.7358 5.5956 -1.5270 47 1 4.5928 1.1840 0.0119 48 1 5.4060 -1.4778 -0.8303 49 1 4.9437 -1.7532 2.0227 50 1 5.2420 -4.4025 -0.1478 51 1 3.1815 -3.7499 0.9686 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_15753748_13308374.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:15:12 Heat of formation + Delta-G solvation = -12.246258 kcal Electronic energy + Delta-G solvation = -31795.996537 eV Core-core repulsion = 27628.837217 eV Total energy + Delta-G solvation = -4167.159320 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.182 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.80742 -41.36415 -40.40470 -38.74643 -38.14210 -36.42498 -34.35567 -33.24055 -32.64322 -31.81412 -31.77663 -29.72954 -29.08405 -28.11891 -25.79081 -24.78124 -23.79154 -23.69938 -23.31935 -22.45783 -21.45089 -20.41589 -19.76841 -18.64927 -18.08085 -17.84209 -17.71550 -17.39738 -16.92421 -16.34990 -16.26554 -16.07452 -15.82470 -15.71130 -15.21417 -15.11794 -14.71983 -14.63904 -14.43801 -14.28567 -14.27141 -14.12011 -14.05867 -13.94638 -13.81403 -13.75232 -13.27946 -13.05383 -12.94928 -12.84402 -12.66162 -12.50603 -12.27576 -12.18076 -12.13296 -11.82247 -11.59003 -11.38727 -11.22368 -11.06292 -10.83515 -10.71129 -9.82671 -9.81121 -9.57188 -9.48363 -4.94486 0.20749 0.46056 0.50862 0.82960 1.17326 1.42202 1.70617 1.90123 1.93995 2.19039 2.88107 3.17311 3.37622 3.50039 3.61861 3.70653 3.77072 3.78571 3.92844 4.11312 4.13827 4.15662 4.21524 4.25607 4.26395 4.31886 4.37734 4.42950 4.44359 4.44756 4.49144 4.57042 4.60438 4.61850 4.62789 4.67207 4.74337 4.75158 4.81607 4.89887 5.03093 5.06288 5.10044 5.13575 5.13955 5.18600 5.21271 5.22302 5.34180 5.38656 5.54335 5.60622 5.65079 5.75851 5.89358 6.13909 6.29701 6.33458 7.06313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.084 3.916 3 C -0.267 4.267 4 C 0.584 3.416 5 O -0.578 6.578 6 N -0.601 5.601 7 C 0.059 3.941 8 C 0.142 3.858 9 H 0.075 0.925 10 C -0.117 4.117 11 C -0.103 4.103 12 C -0.040 4.040 13 H 0.091 0.909 14 C -0.082 4.082 15 C -0.127 4.127 16 C -0.132 4.132 17 C -0.138 4.138 18 C -0.129 4.129 19 C -0.127 4.127 20 C -0.103 4.103 21 C -0.118 4.118 22 C -0.157 4.157 23 C -0.060 4.060 24 C -0.031 4.031 25 O -0.533 6.533 26 Si 0.768 3.232 27 O -0.173 6.173 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.124 0.876 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.135 0.865 42 H 0.135 0.865 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.191 0.809 48 H 0.161 0.839 49 H 0.389 0.611 50 H -0.282 1.282 51 H -0.297 1.297 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.627 -0.118 -2.713 4.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.030 3.970 3 C -0.271 4.271 4 C 0.375 3.625 5 O -0.460 6.460 6 N -0.331 5.331 7 C -0.083 4.083 8 C 0.039 3.961 9 H 0.094 0.906 10 C -0.155 4.155 11 C -0.141 4.141 12 C -0.059 4.059 13 H 0.110 0.890 14 C -0.082 4.082 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.156 4.156 18 C -0.147 4.147 19 C -0.145 4.145 20 C -0.141 4.141 21 C -0.156 4.156 22 C -0.175 4.175 23 C -0.108 4.108 24 C -0.140 4.140 25 O -0.342 6.342 26 Si 0.672 3.328 27 O -0.071 6.071 28 H 0.120 0.880 29 H 0.115 0.885 30 H 0.113 0.887 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.142 0.858 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.153 0.847 42 H 0.153 0.847 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.208 0.792 48 H 0.178 0.822 49 H 0.239 0.761 50 H -0.208 1.208 51 H -0.224 1.224 Dipole moment (debyes) X Y Z Total from point charges 3.395 -0.904 -2.691 4.425 hybrid contribution -0.174 0.663 1.360 1.523 sum 3.221 -0.241 -1.331 3.493 Atomic orbital electron populations 1.20710 0.82779 1.05375 1.05339 1.23187 0.94703 0.83029 0.96042 1.21185 0.94455 0.93288 1.18181 1.17502 0.84849 0.84618 0.75519 1.90725 1.18272 1.84262 1.52758 1.47716 1.09997 1.05669 1.69742 1.22545 0.80292 1.03589 1.01864 1.21128 0.99909 0.78963 0.96094 0.90638 1.21803 1.00999 0.95358 0.97382 1.21508 1.01597 0.93876 0.97119 1.20171 1.00947 0.89579 0.95181 0.89037 1.20008 0.93549 0.95626 0.99066 1.21181 0.96188 0.96662 1.00458 1.21409 1.00338 0.93143 1.00065 1.21428 0.93775 1.00059 1.00308 1.21442 0.96624 0.97070 0.99588 1.21335 1.00036 0.92604 1.00526 1.21509 0.99851 0.94304 0.98429 1.21811 1.02805 0.94919 0.96059 1.23478 0.96914 0.93493 1.03660 1.22948 0.82752 0.96083 1.09023 1.24502 0.91265 1.07175 0.91059 1.86637 1.40096 1.91511 1.15922 0.93571 0.78090 0.72254 0.88886 1.83675 1.16983 1.35009 1.71392 0.88007 0.88532 0.88660 0.91194 0.89403 0.88819 0.89822 0.92558 0.92324 0.91138 0.85841 0.85174 0.85009 0.84721 0.84673 0.92317 0.91045 0.92343 0.89707 0.79216 0.82151 0.76068 1.20803 1.22436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.13 9.97 71.23 0.71 0.58 16 2 C 0.08 0.37 7.37 25.26 0.19 0.56 16 3 C -0.27 -1.35 6.06 -18.99 -0.12 -1.47 16 4 C 0.58 4.65 7.65 86.65 0.66 5.31 16 5 O -0.58 -8.24 14.17 -4.06 -0.06 -8.30 16 6 N -0.60 -1.23 2.76 -826.54 -2.28 -3.51 16 7 C 0.06 -0.29 7.68 127.77 0.98 0.69 16 8 C 0.14 0.20 2.51 44.99 0.11 0.31 16 9 H 0.08 0.55 6.92 -2.39 -0.02 0.53 16 10 C -0.12 0.16 5.20 30.60 0.16 0.32 16 11 C -0.10 0.13 5.02 30.60 0.15 0.28 16 12 C -0.04 0.08 2.36 -11.54 -0.03 0.05 16 13 H 0.09 -0.38 7.88 -2.38 -0.02 -0.40 16 14 C -0.08 -0.10 4.78 -19.87 -0.09 -0.20 16 15 C -0.13 -0.33 8.71 22.27 0.19 -0.13 16 16 C -0.13 -0.35 10.05 22.27 0.22 -0.13 16 17 C -0.14 -0.30 10.05 22.27 0.22 -0.08 16 18 C -0.13 -0.19 10.05 22.27 0.22 0.03 16 19 C -0.13 -0.13 9.67 22.27 0.22 0.09 16 20 C -0.10 0.14 5.01 30.59 0.15 0.30 16 21 C -0.12 0.19 5.19 30.59 0.16 0.35 16 22 C -0.16 -0.02 8.75 23.65 0.21 0.18 16 23 C -0.06 0.00 6.18 24.76 0.15 0.16 16 24 C -0.03 0.11 2.97 71.23 0.21 0.32 16 25 O -0.53 0.65 12.88 -148.98 -1.92 -1.26 16 26 Si 0.77 -1.94 32.09 68.60 2.20 0.26 16 27 O -0.17 -0.48 8.90 4.40 0.04 -0.44 16 28 H 0.10 -0.09 8.14 -2.39 -0.02 -0.11 16 29 H 0.10 -0.21 8.14 -2.39 -0.02 -0.23 16 30 H 0.09 0.51 6.37 -2.39 -0.02 0.50 16 31 H 0.07 -0.45 7.34 -2.39 -0.02 -0.47 16 32 H 0.09 -0.49 5.37 -2.39 -0.01 -0.50 16 33 H 0.09 -0.78 6.44 -2.38 -0.02 -0.80 16 34 H 0.08 -0.37 7.67 -2.38 -0.02 -0.38 16 35 H 0.06 0.08 8.14 -2.39 -0.02 0.06 16 36 H 0.06 0.05 7.40 -2.39 -0.02 0.03 16 37 H 0.07 -0.08 8.14 -2.39 -0.02 -0.10 16 38 H 0.12 0.14 7.10 -2.91 -0.02 0.12 16 39 H 0.13 -0.03 8.06 -2.91 -0.02 -0.05 16 40 H 0.13 -0.14 8.06 -2.91 -0.02 -0.17 16 41 H 0.13 -0.28 8.06 -2.91 -0.02 -0.30 16 42 H 0.14 -0.37 7.95 -2.91 -0.02 -0.39 16 43 H 0.06 0.04 7.37 -2.39 -0.02 0.03 16 44 H 0.07 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.06 0.06 8.14 -2.39 -0.02 0.04 16 46 H 0.08 -0.42 6.67 -2.38 -0.02 -0.43 16 47 H 0.19 -0.87 4.88 -2.91 -0.01 -0.88 16 48 H 0.16 -1.31 7.96 -2.39 -0.02 -1.33 16 49 H 0.39 -2.16 8.70 -74.06 -0.64 -2.80 16 50 H -0.28 -0.83 7.11 99.48 0.71 -0.13 16 51 H -0.30 -1.29 7.11 99.48 0.71 -0.59 16 Total: 0.00 -17.58 399.30 3.02 -14.57 By element: Atomic # 1 Polarization: -9.20 SS G_CDS: 0.34 Total: -8.86 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.69 Total: 7.54 kcal Atomic # 7 Polarization: -1.23 SS G_CDS: -2.28 Total: -3.51 kcal Atomic # 8 Polarization: -8.06 SS G_CDS: -1.94 Total: -10.00 kcal Atomic # 14 Polarization: -1.94 SS G_CDS: 2.20 Total: 0.26 kcal Total: -17.58 3.02 -14.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_15753748_13308374.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.321 kcal (2) G-P(sol) polarization free energy of solvation -17.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -14.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds