Wall clock time and date at job start Tue Mar 9 2021 13:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42899 * 1 3 3 Si 1.86298 * 109.46812 * 2 1 4 4 C 1.50701 * 109.47049 * 119.99583 * 2 1 3 5 5 C 1.34228 * 126.50176 * 254.97546 * 4 2 1 6 6 N 1.36832 * 109.93826 * 180.02562 * 5 4 2 7 7 C 1.46509 * 125.06270 * 179.97438 * 6 5 4 8 8 C 1.50696 * 109.46884 * 265.02646 * 7 6 5 9 9 O 1.21275 * 120.00372 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99846 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00322 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.47269 * 180.02562 * 11 10 8 13 13 F 1.39901 * 112.84664 * 316.19209 * 12 11 10 14 14 C 1.53779 * 113.61561 * 87.50029 * 12 11 10 15 15 C 1.53784 * 87.08045 * 139.98260 * 14 12 11 16 16 H 1.09004 * 113.61451 * 220.02152 * 15 14 12 17 17 C 1.52992 * 113.61673 * 89.11647 * 15 14 12 18 18 O 1.42900 * 109.47327 * 87.49801 * 17 15 14 19 19 C 1.53779 * 113.61250 * 185.00070 * 12 11 10 20 20 C 1.37686 * 109.87511 * 0.23510 * 6 5 4 21 21 C 1.39082 * 133.51227 * 180.39576 * 20 6 5 22 22 C 1.37790 * 119.78089 * 179.64360 * 21 20 6 23 23 C 1.38789 * 120.66335 * 359.76089 * 22 21 20 24 24 C 1.36658 * 120.53122 * 359.97438 * 23 22 21 25 25 C 1.39594 * 119.76187 * 0.02562 * 24 23 22 26 26 H 0.96707 * 113.99999 * 60.00295 * 1 2 3 27 27 H 1.08995 * 109.47162 * 240.00338 * 2 1 3 28 28 H 1.48503 * 110.00415 * 298.67827 * 3 2 1 29 29 H 1.48503 * 110.00126 * 59.99745 * 3 2 1 30 30 H 1.08001 * 125.03597 * 0.02562 * 5 4 2 31 31 H 1.08999 * 109.46615 * 145.03199 * 7 6 5 32 32 H 1.09000 * 109.46972 * 25.02849 * 7 6 5 33 33 H 0.97001 * 119.99387 * 0.02562 * 10 8 7 34 34 H 1.09007 * 109.47181 * 59.99801 * 11 10 8 35 35 H 1.08998 * 109.47105 * 300.00326 * 11 10 8 36 36 H 1.09002 * 113.61557 * 25.43372 * 14 12 11 37 37 H 1.09004 * 113.61501 * 254.52792 * 14 12 11 38 38 H 1.08996 * 109.47544 * 207.50317 * 17 15 14 39 39 H 1.09007 * 109.47088 * 327.50753 * 17 15 14 40 40 H 0.96701 * 114.00609 * 180.02562 * 18 17 15 41 41 H 1.08997 * 113.61646 * 105.47109 * 19 12 11 42 42 H 1.09000 * 113.61527 * 334.56380 * 19 12 11 43 43 H 1.08007 * 120.11191 * 359.40146 * 21 20 6 44 44 H 1.07998 * 119.67184 * 179.77582 * 22 21 20 45 45 H 1.08000 * 119.73352 * 179.97438 * 23 22 21 46 46 H 1.07997 * 120.11783 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4290 0.0000 0.0000 3 14 2.0499 1.7565 0.0000 4 6 1.9313 -0.7103 1.2305 5 6 2.4612 -0.1375 2.3227 6 7 2.8035 -1.0989 3.2343 7 6 3.4093 -0.8403 4.5429 8 6 4.9075 -0.9625 4.4359 9 8 5.4189 -1.2379 3.3713 10 7 5.6791 -0.7656 5.5233 11 6 7.1356 -0.8838 5.4192 12 6 7.7681 -0.6151 6.7862 13 9 7.2039 0.4864 7.4387 14 6 7.8779 -1.8679 7.6711 15 6 9.2598 -1.3473 8.1005 16 1 10.0135 -2.1300 8.1877 17 6 9.2153 -0.4249 9.3202 18 8 9.2922 -1.2081 10.5129 19 6 9.3055 -0.5947 6.7602 20 6 2.4993 -2.3459 2.7360 21 6 2.6302 -3.6360 3.2388 22 6 2.2166 -4.7107 2.4820 23 6 1.6650 -4.5193 1.2229 24 6 1.5220 -3.2600 0.7118 25 6 1.9343 -2.1570 1.4613 26 1 -0.3933 0.4417 -0.7651 27 1 1.7923 -0.5138 -0.8900 28 1 1.5878 2.4586 -1.2243 29 1 1.5613 2.4679 1.2085 30 1 2.5972 0.9248 2.4616 31 1 3.0363 -1.5660 5.2657 32 1 3.1493 0.1661 4.8711 33 1 5.2699 -0.5457 6.3748 34 1 7.5083 -0.1576 4.6968 35 1 7.3958 -1.8898 5.0902 36 1 7.9184 -2.7993 7.1063 37 1 7.1501 -1.8948 8.4822 38 1 10.0576 0.2660 9.2843 39 1 8.2824 0.1390 9.3155 40 1 9.2690 -0.6876 11.3276 41 1 9.7302 0.4063 6.8359 42 1 9.7362 -1.1780 5.9463 43 1 3.0584 -3.7953 4.2175 44 1 2.3224 -5.7120 2.8727 45 1 1.3461 -5.3724 0.6425 46 1 1.0915 -3.1188 -0.2686 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16500644_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:00:41 Heat of formation + Delta-G solvation = -64.310680 kcal Electronic energy + Delta-G solvation = -30510.170492 eV Core-core repulsion = 26089.637362 eV Total energy + Delta-G solvation = -4420.533130 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 349.152 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.93948 -42.54001 -40.71074 -39.79258 -38.10057 -37.74177 -37.19734 -35.67516 -34.21897 -31.67235 -30.49533 -30.26115 -28.82637 -27.09291 -26.81815 -25.49610 -23.76745 -22.99536 -22.56034 -21.68569 -20.56535 -20.13451 -18.95952 -18.48187 -18.33855 -18.19903 -17.73686 -17.20385 -16.98565 -16.84439 -16.43739 -16.26106 -16.01021 -15.69444 -15.63120 -15.36001 -15.03443 -14.96987 -14.80267 -14.74147 -14.38745 -14.32637 -14.12107 -13.79174 -13.52843 -13.49151 -13.25219 -13.15033 -12.74344 -12.57097 -12.49944 -12.44606 -12.09406 -11.81058 -11.72914 -11.60131 -11.31221 -11.16263 -10.80515 -10.55470 -10.35215 -10.27732 -9.16699 -8.64582 -4.88599 0.13608 0.63737 1.32521 1.39446 1.41574 1.59343 1.60711 1.92998 2.12898 2.93844 2.99936 3.10504 3.17131 3.26397 3.48497 3.51588 3.58251 3.70528 3.76477 3.81509 3.91732 4.00717 4.11126 4.21132 4.22944 4.27211 4.37396 4.39958 4.42991 4.55523 4.57012 4.57355 4.66108 4.70100 4.70298 4.78378 4.86561 4.89659 4.92905 5.04752 5.13748 5.20093 5.30915 5.50945 5.65720 5.72646 5.74816 6.13971 6.22051 6.37900 6.67521 6.82856 7.04098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.560 6.560 2 C -0.052 4.052 3 Si 0.761 3.239 4 C -0.179 4.179 5 C 0.071 3.929 6 N -0.467 5.467 7 C 0.087 3.913 8 C 0.496 3.504 9 O -0.562 6.562 10 N -0.714 5.714 11 C 0.115 3.885 12 C 0.084 3.916 13 F -0.192 7.192 14 C -0.142 4.142 15 C -0.119 4.119 16 H 0.091 0.909 17 C 0.083 3.917 18 O -0.594 6.594 19 C -0.136 4.136 20 C 0.091 3.909 21 C -0.134 4.134 22 C -0.106 4.106 23 C -0.153 4.153 24 C -0.086 4.086 25 C -0.118 4.118 26 H 0.390 0.610 27 H 0.074 0.926 28 H -0.283 1.283 29 H -0.279 1.279 30 H 0.192 0.808 31 H 0.144 0.856 32 H 0.157 0.843 33 H 0.417 0.583 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.056 0.944 39 H 0.057 0.943 40 H 0.397 0.603 41 H 0.090 0.910 42 H 0.124 0.876 43 H 0.134 0.866 44 H 0.147 0.853 45 H 0.139 0.861 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.368 2.019 4.395 5.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.369 6.369 2 C -0.160 4.160 3 Si 0.664 3.336 4 C -0.186 4.186 5 C -0.054 4.054 6 N -0.149 5.149 7 C -0.037 4.037 8 C 0.281 3.719 9 O -0.440 6.440 10 N -0.368 5.368 11 C -0.009 4.009 12 C 0.065 3.935 13 F -0.172 7.172 14 C -0.180 4.180 15 C -0.137 4.137 16 H 0.109 0.891 17 C 0.005 3.995 18 O -0.403 6.403 19 C -0.174 4.174 20 C -0.014 4.014 21 C -0.154 4.154 22 C -0.125 4.125 23 C -0.172 4.172 24 C -0.105 4.105 25 C -0.122 4.122 26 H 0.239 0.761 27 H 0.092 0.908 28 H -0.209 1.209 29 H -0.206 1.206 30 H 0.209 0.791 31 H 0.161 0.839 32 H 0.175 0.825 33 H 0.254 0.746 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.131 0.869 37 H 0.098 0.902 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.247 0.753 41 H 0.108 0.892 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.165 0.835 45 H 0.157 0.843 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 3.771 1.979 4.082 5.899 hybrid contribution -1.315 0.485 0.210 1.418 sum 2.456 2.464 4.292 5.525 Atomic orbital electron populations 1.86593 1.19126 1.80688 1.50543 1.24344 0.83400 1.11539 0.96761 0.94104 0.90486 0.71421 0.77623 1.19756 1.09881 0.91526 0.97464 1.21913 1.00004 0.94994 0.88520 1.43407 1.52203 1.03911 1.15409 1.21944 0.88937 1.08770 0.84068 1.21291 0.90328 0.76474 0.83768 1.90802 1.75588 1.48137 1.29453 1.45708 1.06802 1.71635 1.12624 1.21813 0.79897 1.03613 0.95582 1.22193 0.94971 0.85089 0.91232 1.92826 1.86382 1.55549 1.82493 1.23676 0.97656 0.97136 0.99509 1.22309 0.98856 0.99109 0.93461 0.89098 1.22128 1.00848 0.92411 0.84088 1.86407 1.97443 1.39292 1.17155 1.23600 0.92538 1.03234 0.98010 1.18425 1.01678 0.86977 0.94362 1.20259 1.04772 0.88960 1.01458 1.21153 0.98001 0.98999 0.94330 1.20936 1.02244 0.97003 0.96980 1.20453 0.98986 0.91565 0.99499 1.19359 1.04096 0.93699 0.95055 0.76063 0.90756 1.20916 1.20560 0.79139 0.83876 0.82531 0.74560 0.90704 0.89099 0.86851 0.90168 0.92583 0.92526 0.75274 0.89164 0.85791 0.84824 0.83481 0.84304 0.86031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -3.82 12.86 -148.98 -1.92 -5.74 16 2 C -0.05 -0.25 3.05 71.24 0.22 -0.03 16 3 Si 0.76 0.30 30.79 68.60 2.11 2.41 16 4 C -0.18 -1.56 5.61 -18.63 -0.10 -1.66 16 5 C 0.07 0.35 9.89 83.00 0.82 1.17 16 6 N -0.47 -1.99 2.27 -519.99 -1.18 -3.17 16 7 C 0.09 -0.41 6.48 85.63 0.56 0.15 16 8 C 0.50 -0.07 7.90 87.65 0.69 0.62 16 9 O -0.56 -5.66 16.42 -3.01 -0.05 -5.71 16 10 N -0.71 3.69 5.45 -463.07 -2.52 1.16 16 11 C 0.12 -0.49 5.42 86.38 0.47 -0.02 16 12 C 0.08 -0.47 1.73 -10.27 -0.02 -0.48 16 13 F -0.19 0.49 14.80 44.97 0.67 1.15 16 14 C -0.14 0.77 7.07 31.12 0.22 0.99 16 15 C -0.12 0.46 4.20 -10.27 -0.04 0.41 16 16 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 17 C 0.08 -0.21 6.66 71.98 0.48 0.27 16 18 O -0.59 -0.01 13.66 -148.98 -2.03 -2.05 16 19 C -0.14 0.90 7.13 31.12 0.22 1.12 16 20 C 0.09 0.81 6.80 39.03 0.27 1.07 16 21 C -0.13 -0.81 10.00 22.37 0.22 -0.58 16 22 C -0.11 -0.54 10.01 22.30 0.22 -0.32 16 23 C -0.15 -1.02 9.97 22.03 0.22 -0.80 16 24 C -0.09 -0.86 10.05 22.23 0.22 -0.64 16 25 C -0.12 -1.37 6.35 -20.20 -0.13 -1.49 16 26 H 0.39 -0.69 8.74 -74.05 -0.65 -1.34 16 27 H 0.07 0.24 7.96 -2.39 -0.02 0.22 16 28 H -0.28 -1.14 7.11 99.48 0.71 -0.44 16 29 H -0.28 -1.21 7.04 99.48 0.70 -0.51 16 30 H 0.19 -0.22 6.30 -2.91 -0.02 -0.24 16 31 H 0.14 -1.38 8.14 -2.39 -0.02 -1.40 16 32 H 0.16 -1.81 8.12 -2.39 -0.02 -1.83 16 33 H 0.42 -4.07 8.03 -92.71 -0.74 -4.82 16 34 H 0.07 -0.16 8.14 -2.38 -0.02 -0.18 16 35 H 0.09 -0.35 7.84 -2.39 -0.02 -0.37 16 36 H 0.11 -0.82 7.90 -2.39 -0.02 -0.84 16 37 H 0.08 -0.31 8.10 -2.39 -0.02 -0.33 16 38 H 0.06 -0.23 8.14 -2.39 -0.02 -0.25 16 39 H 0.06 -0.15 6.31 -2.38 -0.02 -0.16 16 40 H 0.40 -3.18 9.12 -74.06 -0.68 -3.86 16 41 H 0.09 -0.60 8.10 -2.39 -0.02 -0.62 16 42 H 0.12 -1.15 8.10 -2.39 -0.02 -1.17 16 43 H 0.13 0.13 8.06 -2.91 -0.02 0.11 16 44 H 0.15 -0.05 8.06 -2.91 -0.02 -0.08 16 45 H 0.14 0.29 8.06 -2.91 -0.02 0.27 16 46 H 0.12 0.97 8.06 -2.91 -0.02 0.94 16 Total: 0.00 -27.92 388.12 -1.39 -29.31 By element: Atomic # 1 Polarization: -16.14 SS G_CDS: -1.00 Total: -17.14 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: 4.54 Total: -0.22 kcal Atomic # 7 Polarization: 1.69 SS G_CDS: -3.70 Total: -2.01 kcal Atomic # 8 Polarization: -9.50 SS G_CDS: -4.00 Total: -13.50 kcal Atomic # 9 Polarization: 0.49 SS G_CDS: 0.67 Total: 1.15 kcal Atomic # 14 Polarization: 0.30 SS G_CDS: 2.11 Total: 2.41 kcal Total: -27.92 -1.39 -29.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16500644_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.005 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds