Wall clock time and date at job start Tue Mar 9 2021 13:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 O 2 2 C 1.42893 * 1 3 3 Si 1.86304 * 109.47357 * 2 1 4 4 C 1.50701 * 109.47310 * 240.00085 * 2 1 3 5 5 C 1.34238 * 126.50440 * 105.02333 * 4 2 1 6 6 N 1.36830 * 109.93955 * 180.02562 * 5 4 2 7 7 C 1.46505 * 125.05936 * 180.02562 * 6 5 4 8 8 C 1.50697 * 109.46996 * 265.01877 * 7 6 5 9 9 O 1.21289 * 120.00073 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99976 * 180.02562 * 8 7 6 11 11 C 1.46503 * 119.99997 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.84820 * 336.19824 * 11 10 8 13 13 C 1.53783 * 113.68877 * 107.46514 * 11 10 8 14 14 C 1.53782 * 87.07979 * 89.12765 * 13 11 10 15 15 H 1.08995 * 113.68916 * 270.87252 * 14 13 11 16 16 C 1.53001 * 113.61248 * 139.98034 * 14 13 11 17 17 O 1.42901 * 109.47019 * 87.50441 * 16 14 13 18 18 C 1.35897 * 117.00045 * 180.02562 * 17 16 14 19 19 C 1.38738 * 120.05494 * 0.27113 * 18 17 16 20 20 C 1.38141 * 119.94395 * 180.25974 * 19 18 17 21 21 C 1.38274 * 120.05552 * 359.44290 * 20 19 18 22 22 C 1.38261 * 120.10990 * 0.30244 * 21 20 19 23 23 C 1.38149 * 120.05703 * 359.97438 * 22 21 20 24 24 C 1.53771 * 113.61529 * 205.00024 * 11 10 8 25 25 C 1.37685 * 109.87729 * 0.26100 * 6 5 4 26 26 C 1.39082 * 133.51656 * 179.73808 * 25 6 5 27 27 C 1.37788 * 119.77971 * 180.02562 * 26 25 6 28 28 C 1.38791 * 120.66845 * 359.97438 * 27 26 25 29 29 C 1.36667 * 120.52729 * 359.57955 * 28 27 26 30 30 C 1.39593 * 119.75764 * 0.65783 * 29 28 27 31 31 H 0.96702 * 113.99907 * 60.00010 * 1 2 3 32 32 H 1.08996 * 109.47314 * 119.99620 * 2 1 3 33 33 H 1.48505 * 109.99649 * 298.68458 * 3 2 1 34 34 H 1.48503 * 109.99910 * 59.99748 * 3 2 1 35 35 H 1.08000 * 125.02538 * 359.97438 * 5 4 2 36 36 H 1.09002 * 109.46487 * 145.02279 * 7 6 5 37 37 H 1.08995 * 109.47384 * 25.02384 * 7 6 5 38 38 H 0.97000 * 119.99831 * 0.02562 * 10 8 7 39 39 H 1.08998 * 113.61540 * 334.57641 * 13 11 10 40 40 H 1.08996 * 113.61649 * 203.67828 * 13 11 10 41 41 H 1.08999 * 109.47074 * 327.50686 * 16 14 13 42 42 H 1.08996 * 109.46867 * 207.50027 * 16 14 13 43 43 H 1.07998 * 120.02566 * 359.97438 * 19 18 17 44 44 H 1.08002 * 119.97550 * 179.72852 * 20 19 18 45 45 H 1.07998 * 119.94363 * 180.27764 * 21 20 19 46 46 H 1.07996 * 119.97484 * 179.97438 * 22 21 20 47 47 H 1.07998 * 120.02913 * 179.97438 * 23 22 21 48 48 H 1.08999 * 113.61567 * 156.25199 * 24 11 10 49 49 H 1.09003 * 113.61559 * 25.35017 * 24 11 10 50 50 H 1.07995 * 120.10803 * 0.02562 * 26 25 6 51 51 H 1.07997 * 119.66870 * 180.02562 * 27 26 25 52 52 H 1.07996 * 119.73855 * 180.02562 * 28 27 26 53 53 H 1.07994 * 120.12054 * 179.91883 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 8 0.0000 0.0000 0.0000 2 6 1.4289 0.0000 0.0000 3 14 2.0500 1.7565 0.0000 4 6 1.9313 -0.7104 -1.2305 5 6 2.4612 -0.1377 -2.3228 6 7 2.8026 -1.0990 -3.2347 7 6 3.4081 -0.8404 -4.5434 8 6 2.3288 -0.7820 -5.5935 9 8 1.1680 -0.9403 -5.2795 10 7 2.6534 -0.5538 -6.8816 11 6 1.6040 -0.4965 -7.9023 12 1 0.7030 -1.0378 -7.6139 13 6 1.3289 0.9228 -8.4265 14 6 2.4153 0.6586 -9.4823 15 1 3.4186 0.9329 -9.1564 16 6 2.0698 1.2078 -10.8679 17 8 2.5018 2.5667 -10.9630 18 6 2.2684 3.2075 -12.1385 19 6 1.6315 2.5438 -13.1771 20 6 1.4002 3.1957 -14.3729 21 6 1.7926 4.5121 -14.5311 22 6 2.4227 5.1773 -13.4957 23 6 2.6615 4.5281 -12.2999 24 6 2.1014 -0.8376 -9.3168 25 6 2.4875 -2.3452 -2.7413 26 6 2.6151 -3.6351 -3.2455 27 6 2.1957 -4.7093 -2.4912 28 6 1.6467 -4.5181 -1.2309 29 6 1.5202 -3.2599 -0.7124 30 6 1.9339 -2.1570 -1.4614 31 1 -0.3933 0.4417 -0.7651 32 1 1.7923 -0.5137 0.8900 33 1 1.5878 2.4586 -1.2243 34 1 1.5615 2.4679 1.2085 35 1 2.5971 0.9247 -2.4616 36 1 4.1070 -1.6412 -4.7849 37 1 3.9403 0.1104 -4.5161 38 1 3.5817 -0.4276 -7.1327 39 1 1.5906 1.7084 -7.7177 40 1 0.3314 1.0469 -8.8480 41 1 0.9917 1.1579 -11.0201 42 1 2.5724 0.6127 -11.6303 43 1 1.3210 1.5170 -13.0524 44 1 0.9084 2.6782 -15.1832 45 1 1.6068 5.0214 -15.4652 46 1 2.7286 6.2054 -13.6219 47 1 3.1541 5.0480 -11.4916 48 1 1.3151 -1.1949 -9.9818 49 1 2.9868 -1.4733 -9.3269 50 1 3.0414 -3.7943 -4.2248 51 1 2.2961 -5.7102 -2.8842 52 1 1.3233 -5.3708 -0.6525 53 1 1.0908 -3.1186 0.2684 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534226_9818708.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:20:05 Heat of formation + Delta-G solvation = 25.877153 kcal Electronic energy + Delta-G solvation = -34940.074725 eV Core-core repulsion = 30324.464228 eV Total energy + Delta-G solvation = -4615.610497 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 393.177 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -42.55662 -41.49103 -40.87299 -39.53274 -38.18268 -38.11582 -37.67387 -34.70529 -33.99709 -32.04362 -31.51432 -31.03081 -30.24779 -29.49779 -28.54490 -26.77775 -25.89331 -24.51850 -23.77256 -23.39692 -22.84417 -22.53388 -21.88275 -20.69624 -20.35517 -19.21249 -18.70025 -18.52961 -17.77438 -17.34534 -17.31061 -16.94879 -16.81089 -16.68233 -16.40492 -16.33580 -16.14106 -15.77868 -15.49983 -15.35870 -15.13162 -14.96291 -14.77538 -14.71968 -14.37806 -14.36216 -14.13938 -14.10984 -13.66757 -13.56064 -13.51103 -13.27070 -13.06839 -12.73969 -12.57366 -12.52474 -12.39983 -12.13643 -12.08486 -12.01288 -11.75056 -11.73896 -11.63923 -11.23593 -11.19837 -10.56304 -10.46920 -10.18894 -9.98771 -9.19713 -9.16419 -8.64205 -4.90869 0.13831 0.35755 0.46101 0.63648 1.33249 1.39700 1.40791 1.60306 1.69239 1.98421 2.15215 2.16580 2.81580 2.94646 3.38057 3.47239 3.48871 3.57163 3.65778 3.70225 3.76272 3.77320 3.84930 3.88405 3.95835 4.03980 4.14591 4.20615 4.21971 4.26907 4.29901 4.30479 4.40864 4.47980 4.49145 4.53919 4.58762 4.63500 4.68442 4.71342 4.72139 4.78100 4.78983 4.89623 4.95925 5.00369 5.05239 5.11399 5.13591 5.32089 5.45332 5.50311 5.50917 5.58509 5.66383 5.73415 5.74859 5.83164 6.17291 6.22753 6.43301 6.43829 6.52527 7.09848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 O -0.556 6.556 2 C -0.056 4.056 3 Si 0.786 3.214 4 C -0.215 4.215 5 C 0.073 3.927 6 N -0.466 5.466 7 C 0.088 3.912 8 C 0.493 3.507 9 O -0.573 6.573 10 N -0.694 5.694 11 C 0.116 3.884 12 H 0.080 0.920 13 C -0.147 4.147 14 C -0.099 4.099 15 H 0.110 0.890 16 C 0.063 3.937 17 O -0.329 6.329 18 C 0.112 3.888 19 C -0.219 4.219 20 C -0.089 4.089 21 C -0.169 4.169 22 C -0.087 4.087 23 C -0.173 4.173 24 C -0.119 4.119 25 C 0.091 3.909 26 C -0.134 4.134 27 C -0.107 4.107 28 C -0.154 4.154 29 C -0.088 4.088 30 C -0.116 4.116 31 H 0.381 0.619 32 H 0.111 0.889 33 H -0.275 1.275 34 H -0.303 1.303 35 H 0.195 0.805 36 H 0.148 0.852 37 H 0.164 0.836 38 H 0.421 0.579 39 H 0.063 0.937 40 H 0.088 0.912 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.146 0.854 47 H 0.133 0.867 48 H 0.106 0.894 49 H 0.098 0.902 50 H 0.134 0.866 51 H 0.146 0.854 52 H 0.136 0.864 53 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.874 0.323 -6.640 10.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 O -0.363 6.363 2 C -0.164 4.164 3 Si 0.689 3.311 4 C -0.223 4.223 5 C -0.052 4.052 6 N -0.148 5.148 7 C -0.037 4.037 8 C 0.279 3.721 9 O -0.451 6.451 10 N -0.347 5.347 11 C 0.010 3.990 12 H 0.098 0.902 13 C -0.185 4.185 14 C -0.118 4.118 15 H 0.128 0.872 16 C -0.012 4.012 17 O -0.243 6.243 18 C 0.067 3.933 19 C -0.238 4.238 20 C -0.107 4.107 21 C -0.187 4.187 22 C -0.105 4.105 23 C -0.191 4.191 24 C -0.157 4.157 25 C -0.014 4.014 26 C -0.154 4.154 27 C -0.126 4.126 28 C -0.173 4.173 29 C -0.106 4.106 30 C -0.120 4.120 31 H 0.229 0.771 32 H 0.129 0.871 33 H -0.201 1.201 34 H -0.231 1.231 35 H 0.212 0.788 36 H 0.165 0.835 37 H 0.182 0.818 38 H 0.259 0.741 39 H 0.082 0.918 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.094 0.906 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.158 0.842 46 H 0.164 0.836 47 H 0.150 0.850 48 H 0.125 0.875 49 H 0.116 0.884 50 H 0.151 0.849 51 H 0.163 0.837 52 H 0.154 0.846 53 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 7.175 0.852 -5.991 9.387 hybrid contribution -1.369 -0.270 -0.629 1.530 sum 5.807 0.582 -6.620 8.825 Atomic orbital electron populations 1.86552 1.19557 1.80568 1.49653 1.24706 0.82504 1.11994 0.97158 0.94198 0.89603 0.70546 0.76732 1.20710 1.10875 0.91939 0.98749 1.21998 0.99594 0.95045 0.88576 1.43422 1.53205 1.03857 1.14331 1.22002 0.93658 1.09342 0.78653 1.21532 0.90526 0.75646 0.84423 1.90806 1.22469 1.50212 1.81635 1.45487 1.11306 1.72135 1.05803 1.21761 0.91737 0.97361 0.88181 0.90171 1.23501 0.99671 0.97021 0.98354 1.22595 1.00508 0.96211 0.92439 0.87188 1.23030 0.99778 0.79572 0.98773 1.86042 1.77667 1.27847 1.32725 1.19244 0.95820 0.92719 0.85521 1.21502 1.05673 1.01918 0.94671 1.21315 0.97497 0.94950 0.96981 1.21427 1.01514 0.95451 1.00345 1.21301 0.96566 1.00679 0.91973 1.20706 1.05724 0.92829 0.99864 1.23271 1.03414 0.94787 0.94221 1.18403 1.01748 0.87009 0.94196 1.20249 1.05024 0.89081 1.01036 1.21135 0.98096 0.99046 0.94312 1.20923 1.02334 0.97048 0.96947 1.20452 0.98923 0.91709 0.99555 1.19340 1.03932 0.93763 0.94966 0.77055 0.87141 1.20138 1.23126 0.78792 0.83453 0.81831 0.74069 0.91827 0.89366 0.91482 0.90633 0.84139 0.83970 0.84182 0.83577 0.84955 0.87519 0.88354 0.84852 0.83655 0.84591 0.86342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 O -0.56 -5.01 12.88 -148.98 -1.92 -6.93 16 2 C -0.06 -0.25 3.06 71.24 0.22 -0.03 16 3 Si 0.79 -0.43 30.82 68.60 2.11 1.68 16 4 C -0.22 -1.29 5.58 -18.62 -0.10 -1.40 16 5 C 0.07 0.13 9.89 83.00 0.82 0.95 16 6 N -0.47 -0.81 2.27 -520.00 -1.18 -1.99 16 7 C 0.09 -0.64 6.48 85.63 0.56 -0.08 16 8 C 0.49 -0.40 7.90 87.66 0.69 0.29 16 9 O -0.57 -6.55 16.02 -3.06 -0.05 -6.60 16 10 N -0.69 4.77 5.27 -440.04 -2.32 2.45 16 11 C 0.12 -0.45 4.32 45.51 0.20 -0.26 16 12 H 0.08 0.17 7.46 -2.39 -0.02 0.15 16 13 C -0.15 0.47 7.43 31.12 0.23 0.70 16 14 C -0.10 0.68 3.89 -10.27 -0.04 0.64 16 15 H 0.11 -0.89 8.14 -2.39 -0.02 -0.91 16 16 C 0.06 -0.24 4.58 71.98 0.33 0.09 16 17 O -0.33 -0.89 10.14 -92.39 -0.94 -1.82 16 18 C 0.11 0.43 6.69 22.51 0.15 0.58 16 19 C -0.22 -0.31 9.04 22.37 0.20 -0.10 16 20 C -0.09 -0.04 10.04 22.26 0.22 0.18 16 21 C -0.17 -0.08 10.04 22.28 0.22 0.14 16 22 C -0.09 -0.10 10.04 22.25 0.22 0.13 16 23 C -0.17 -0.59 9.99 22.37 0.22 -0.36 16 24 C -0.12 1.08 7.39 31.12 0.23 1.31 16 25 C 0.09 0.65 6.80 39.03 0.27 0.92 16 26 C -0.13 -0.66 10.00 22.37 0.22 -0.44 16 27 C -0.11 -0.50 10.01 22.30 0.22 -0.28 16 28 C -0.15 -1.01 9.97 22.03 0.22 -0.79 16 29 C -0.09 -0.84 10.05 22.23 0.22 -0.61 16 30 C -0.12 -1.15 6.35 -20.19 -0.13 -1.28 16 31 H 0.38 1.60 8.70 -74.06 -0.64 0.95 16 32 H 0.11 0.44 7.96 -2.39 -0.02 0.42 16 33 H -0.28 -0.48 7.00 99.48 0.70 0.22 16 34 H -0.30 -2.19 7.11 99.48 0.71 -1.48 16 35 H 0.20 -0.92 6.27 -2.91 -0.02 -0.94 16 36 H 0.15 -1.89 8.14 -2.39 -0.02 -1.91 16 37 H 0.16 -2.51 8.12 -2.39 -0.02 -2.53 16 38 H 0.42 -5.96 8.70 -92.71 -0.81 -6.77 16 39 H 0.06 -0.04 8.14 -2.39 -0.02 -0.06 16 40 H 0.09 -0.19 7.90 -2.39 -0.02 -0.21 16 41 H 0.07 -0.29 7.35 -2.39 -0.02 -0.31 16 42 H 0.08 -0.45 7.67 -2.39 -0.02 -0.47 16 43 H 0.14 -0.37 6.30 -2.91 -0.02 -0.39 16 44 H 0.14 -0.55 8.06 -2.91 -0.02 -0.58 16 45 H 0.14 -0.48 8.06 -2.91 -0.02 -0.51 16 46 H 0.15 -0.49 8.06 -2.91 -0.02 -0.51 16 47 H 0.13 0.22 8.06 -2.91 -0.02 0.19 16 48 H 0.11 -1.05 8.10 -2.39 -0.02 -1.07 16 49 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 50 H 0.13 -0.01 8.06 -2.91 -0.02 -0.03 16 51 H 0.15 -0.08 8.06 -2.91 -0.02 -0.10 16 52 H 0.14 0.33 8.06 -2.91 -0.02 0.31 16 53 H 0.12 1.02 8.06 -2.91 -0.02 1.00 16 Total: 0.00 -30.26 442.59 0.64 -29.62 By element: Atomic # 1 Polarization: -16.23 SS G_CDS: -0.48 Total: -16.71 kcal Atomic # 6 Polarization: -5.10 SS G_CDS: 5.40 Total: 0.30 kcal Atomic # 7 Polarization: 3.96 SS G_CDS: -3.50 Total: 0.47 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -2.90 Total: -15.36 kcal Atomic # 14 Polarization: -0.43 SS G_CDS: 2.11 Total: 1.68 kcal Total: -30.26 0.64 -29.62 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534226_9818708.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.501 kcal (2) G-P(sol) polarization free energy of solvation -30.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds