Wall clock time and date at job start Tue Mar 9 2021 13:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 103.00143 * 2 1 4 4 C 1.53000 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.08990 * 112.85361 * 45.33479 * 4 3 2 6 6 C 1.53787 * 113.61270 * 176.53257 * 4 3 2 7 7 C 1.53778 * 87.08069 * 139.97924 * 6 4 3 8 8 H 1.08994 * 113.61959 * 89.11407 * 7 6 4 9 9 N 1.46501 * 113.61233 * 219.93517 * 7 6 4 10 10 C 1.34777 * 119.99904 * 205.00475 * 9 7 6 11 11 O 1.21281 * 120.00314 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99719 * 180.02562 * 10 9 7 13 13 C 1.53043 * 109.32774 * 180.85638 * 12 10 9 14 14 C 1.53539 * 108.57540 * 190.18208 * 13 12 10 15 15 N 1.47027 * 107.64657 * 60.95140 * 14 13 12 16 16 C 1.38931 * 118.88576 * 316.31662 * 15 14 13 17 17 C 1.31114 * 121.84564 * 13.33772 * 16 15 14 18 18 C 1.50703 * 118.54483 * 179.56990 * 17 16 15 19 19 O 1.42897 * 109.47255 * 250.02381 * 18 17 16 20 20 Si 1.86296 * 109.47077 * 10.02701 * 18 17 16 21 21 C 1.53783 * 113.61182 * 274.13530 * 4 3 2 22 22 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 23 23 H 1.09007 * 109.46846 * 299.99983 * 1 2 3 24 24 H 1.09007 * 109.47453 * 59.99610 * 1 2 3 25 25 H 1.09002 * 109.47124 * 60.00087 * 3 2 1 26 26 H 1.09001 * 109.46975 * 300.00209 * 3 2 1 27 27 H 1.09000 * 113.61079 * 254.52465 * 6 4 3 28 28 H 1.09002 * 113.61333 * 25.42742 * 6 4 3 29 29 H 0.97002 * 120.00116 * 24.99777 * 9 7 6 30 30 H 1.09000 * 109.32635 * 300.33752 * 12 10 9 31 31 H 1.08995 * 109.62248 * 309.89187 * 13 12 10 32 32 H 1.09002 * 109.61946 * 70.44693 * 13 12 10 33 33 H 1.08996 * 109.83759 * 301.40720 * 14 13 12 34 34 H 1.09000 * 109.86232 * 180.50861 * 14 13 12 35 35 H 0.96996 * 120.55724 * 136.34644 * 15 14 13 36 36 H 1.08002 * 119.07750 * 193.32037 * 16 15 14 37 37 H 1.08998 * 109.46870 * 130.02690 * 18 17 16 38 38 H 0.96710 * 114.00266 * 60.00158 * 19 18 17 39 39 H 1.48503 * 109.99858 * 180.02562 * 20 18 17 40 40 H 1.48501 * 109.99828 * 301.31623 * 20 18 17 41 41 H 1.09003 * 113.61584 * 334.56887 * 21 4 3 42 42 H 1.09000 * 113.61286 * 105.47141 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2422 1.2861 -0.7152 6 6 4.1959 3.4069 -0.0859 7 6 5.2903 3.0456 0.9322 8 1 6.2144 2.6937 0.4737 9 7 5.5156 4.0810 1.9438 10 6 6.7090 4.1690 2.5639 11 8 7.5963 3.3907 2.2848 12 6 6.9405 5.2338 3.6049 13 6 8.3737 5.1250 4.1307 14 6 8.5148 6.0365 5.3582 15 7 7.5678 5.5614 6.3775 16 6 6.2797 5.2161 5.9878 17 6 5.9583 5.0541 4.7270 18 6 4.5409 4.6699 4.3888 19 8 4.5133 3.3232 3.9118 20 14 3.4788 4.8108 5.9128 21 6 4.3664 1.9082 1.4045 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 1.8032 2.2372 0.8900 26 1 1.8031 2.2371 -0.8900 27 1 4.5855 3.6872 -1.0646 28 1 3.4601 4.1143 0.2965 29 1 4.8059 4.7033 2.1673 30 1 6.7978 6.2159 3.1543 31 1 8.5819 4.0936 4.4152 32 1 9.0726 5.4423 3.3567 33 1 8.2782 7.0647 5.0845 34 1 9.5324 5.9819 5.7450 35 1 7.8376 5.4905 7.3064 36 1 5.5219 5.0771 6.7447 37 1 4.1582 5.3368 3.6163 38 1 4.8408 2.6734 4.5488 39 1 2.0785 4.4339 5.5926 40 1 4.0089 3.9300 6.9845 41 1 3.6774 2.2052 2.1952 42 1 4.8934 0.9804 1.6273 There are 53 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 53 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534458_15608500.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:23:40 Heat of formation + Delta-G solvation = -7.999021 kcal Electronic energy + Delta-G solvation = -23486.542098 eV Core-core repulsion = 20174.880041 eV Total energy + Delta-G solvation = -3311.662056 eV No. of doubly occupied orbitals = 53 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 299.134 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52688 -40.06029 -38.66162 -37.69990 -34.43326 -33.35591 -32.75676 -30.50605 -29.63457 -27.35279 -26.57361 -26.05541 -23.56644 -23.10305 -21.42237 -20.55251 -19.39904 -18.95879 -17.81946 -17.59436 -17.29666 -16.71072 -16.33551 -16.24645 -15.98816 -15.54652 -15.34841 -15.00842 -14.96280 -14.67751 -14.46850 -14.23794 -13.96371 -13.84601 -13.63824 -13.35963 -13.33196 -13.05582 -12.75609 -12.58119 -12.17031 -11.95101 -11.91509 -11.65456 -11.45614 -11.41043 -11.29390 -10.82345 -10.43138 -10.38342 -9.54028 -8.57129 -8.55273 -4.97887 0.75852 1.20121 1.30145 1.53166 1.69451 1.93004 2.05231 2.48081 2.54601 3.38362 3.58686 3.63248 3.66254 3.75466 3.83207 3.99698 4.03810 4.19387 4.20682 4.23146 4.25388 4.34867 4.37738 4.40919 4.47834 4.56111 4.56908 4.71393 4.78393 4.78582 4.80329 4.92183 4.96234 5.15899 5.17863 5.28269 5.31073 5.37626 5.53714 5.87729 6.20433 6.48103 6.73358 6.86512 7.59474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.263 6.263 3 C -0.070 4.070 4 C -0.097 4.097 5 H 0.099 0.901 6 C -0.136 4.136 7 C 0.128 3.872 8 H 0.109 0.891 9 N -0.694 5.694 10 C 0.532 3.468 11 O -0.551 6.551 12 C -0.040 4.040 13 C -0.120 4.120 14 C 0.119 3.881 15 N -0.747 5.747 16 C 0.153 3.847 17 C -0.279 4.279 18 C -0.055 4.055 19 O -0.521 6.521 20 Si 0.668 3.332 21 C -0.133 4.133 22 H 0.101 0.899 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.399 0.601 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.082 0.918 35 H 0.403 0.597 36 H 0.133 0.867 37 H 0.105 0.895 38 H 0.370 0.630 39 H -0.261 1.261 40 H -0.265 1.265 41 H 0.100 0.900 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.015 6.174 2.923 7.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.037 6.037 3 C -0.218 4.218 4 C -0.117 4.117 5 H 0.117 0.883 6 C -0.176 4.176 7 C 0.023 3.977 8 H 0.127 0.873 9 N -0.345 5.345 10 C 0.319 3.681 11 O -0.429 6.429 12 C -0.062 4.062 13 C -0.158 4.158 14 C -0.005 4.005 15 N -0.377 5.377 16 C 0.030 3.970 17 C -0.290 4.290 18 C -0.166 4.166 19 O -0.327 6.327 20 Si 0.571 3.429 21 C -0.172 4.172 22 H 0.120 0.880 23 H 0.094 0.906 24 H 0.095 0.905 25 H 0.100 0.900 26 H 0.099 0.901 27 H 0.094 0.906 28 H 0.104 0.896 29 H 0.236 0.764 30 H 0.111 0.889 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.237 0.763 36 H 0.150 0.850 37 H 0.123 0.877 38 H 0.218 0.782 39 H -0.186 1.186 40 H -0.191 1.191 41 H 0.119 0.881 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.415 4.672 2.647 5.553 hybrid contribution -0.805 0.148 0.300 0.872 sum -2.220 4.820 2.947 6.071 Atomic orbital electron populations 1.23388 0.94334 1.06626 1.04831 1.87051 1.07153 1.11490 1.98032 1.23383 0.99433 0.94290 1.04717 1.22150 0.92346 0.97402 0.99815 0.88253 1.23387 0.98162 0.96074 0.99939 1.22326 0.97625 0.89004 0.88782 0.87317 1.45957 1.14483 1.34144 1.39936 1.20329 0.81881 0.84816 0.81115 1.90687 1.43780 1.43538 1.64928 1.19701 0.95043 0.98175 0.93252 1.21713 0.95019 1.01553 0.97550 1.21661 0.92969 0.97189 0.88716 1.44608 1.10047 1.72695 1.10312 1.20514 0.86962 0.94133 0.95371 1.20526 0.96918 1.18280 0.93307 1.24635 0.97527 0.85841 1.08625 1.86760 1.86965 1.15487 1.43488 0.95327 0.78646 0.92240 0.76718 1.23557 0.98761 0.98990 0.95851 0.88046 0.90575 0.90523 0.90036 0.90082 0.90594 0.89602 0.76369 0.88868 0.90280 0.90210 0.91850 0.89980 0.76282 0.85016 0.87724 0.78172 1.18616 1.19083 0.88147 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.02 10.76 101.05 1.09 1.11 16 2 S -0.26 -0.57 22.38 -107.50 -2.41 -2.97 16 3 C -0.07 -0.01 5.76 37.16 0.21 0.21 16 4 C -0.10 -0.02 3.64 -89.80 -0.33 -0.34 16 5 H 0.10 0.10 8.14 -51.93 -0.42 -0.32 16 6 C -0.14 0.12 7.40 -25.92 -0.19 -0.07 16 7 C 0.13 0.13 4.24 -67.03 -0.28 -0.16 16 8 H 0.11 0.34 7.46 -51.93 -0.39 -0.05 16 9 N -0.69 -0.29 3.17 -52.93 -0.17 -0.46 16 10 C 0.53 1.36 6.35 -10.99 -0.07 1.29 16 11 O -0.55 -3.77 15.40 5.56 0.09 -3.69 16 12 C -0.04 0.00 2.74 -93.14 -0.26 -0.25 16 13 C -0.12 -0.03 4.91 -26.43 -0.13 -0.16 16 14 C 0.12 -0.25 7.16 -3.47 -0.02 -0.28 16 15 N -0.75 1.64 5.83 -60.68 -0.35 1.29 16 16 C 0.15 -0.27 9.62 -16.08 -0.15 -0.43 16 17 C -0.28 0.37 5.15 -101.34 -0.52 -0.15 16 18 C -0.05 0.12 1.74 36.01 0.06 0.18 16 19 O -0.52 0.36 7.09 -35.23 -0.25 0.11 16 20 Si 0.67 -1.42 29.95 -169.99 -5.09 -6.52 16 21 C -0.13 -0.13 6.84 -25.82 -0.18 -0.31 16 22 H 0.10 -0.07 8.14 -51.93 -0.42 -0.49 16 23 H 0.08 -0.06 8.14 -51.92 -0.42 -0.48 16 24 H 0.08 -0.07 8.14 -51.92 -0.42 -0.50 16 25 H 0.08 -0.02 7.88 -51.92 -0.41 -0.42 16 26 H 0.08 -0.04 8.14 -51.92 -0.42 -0.47 16 27 H 0.08 -0.08 8.14 -51.93 -0.42 -0.50 16 28 H 0.09 -0.16 8.08 -51.93 -0.42 -0.58 16 29 H 0.40 -0.54 5.68 -40.82 -0.23 -0.77 16 30 H 0.09 -0.13 8.14 -51.93 -0.42 -0.55 16 31 H 0.08 0.22 7.75 -51.93 -0.40 -0.19 16 32 H 0.08 0.03 8.14 -51.93 -0.42 -0.40 16 33 H 0.06 -0.17 8.14 -51.93 -0.42 -0.59 16 34 H 0.08 -0.26 8.14 -51.93 -0.42 -0.68 16 35 H 0.40 -1.53 8.96 -40.82 -0.37 -1.89 16 36 H 0.13 -0.39 4.30 -52.49 -0.23 -0.62 16 37 H 0.11 -0.37 6.39 -51.93 -0.33 -0.70 16 38 H 0.37 -0.45 8.70 45.56 0.40 -0.06 16 39 H -0.26 -0.41 7.11 56.52 0.40 -0.01 16 40 H -0.27 -0.07 6.84 56.52 0.39 0.32 16 41 H 0.10 0.12 6.15 -51.93 -0.32 -0.20 16 42 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 334.98 15.07 5.05 5.05 Total: 0.00 -6.45 334.98 -10.47 -16.92 By element: Atomic # 1 Polarization: -3.82 SS G_CDS: -6.56 Total: -10.38 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -0.77 Total: 0.64 kcal Atomic # 7 Polarization: 1.35 SS G_CDS: -0.52 Total: 0.83 kcal Atomic # 8 Polarization: -3.41 SS G_CDS: -0.16 Total: -3.58 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.09 Total: -6.52 kcal Atomic # 16 Polarization: -0.57 SS G_CDS: -2.41 Total: -2.97 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -6.45 -10.47 -16.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_15608500.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.920 kcal (2) G-P(sol) polarization free energy of solvation -6.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -16.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds