Wall clock time and date at job start Tue Mar 9 2021 13:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 C 1.81404 * 103.00143 * 2 1 4 4 C 1.53000 * 109.46946 * 180.02562 * 3 2 1 5 5 H 1.08992 * 112.85173 * 43.80276 * 4 3 2 6 6 C 1.53787 * 113.61228 * 175.00260 * 4 3 2 7 7 C 1.53776 * 87.07971 * 139.97805 * 6 4 3 8 8 H 1.09006 * 113.61662 * 89.20162 * 7 6 4 9 9 N 1.46507 * 113.61558 * 220.01556 * 7 6 4 10 10 C 1.34766 * 120.00093 * 205.00202 * 9 7 6 11 11 O 1.21284 * 120.00448 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00069 * 180.02562 * 10 9 7 13 13 N 1.46496 * 109.47642 * 180.02562 * 12 10 9 14 14 C 1.36841 * 125.06111 * 265.02443 * 13 12 10 15 15 C 1.34233 * 109.93932 * 179.97438 * 14 13 12 16 16 C 1.50696 * 126.50379 * 179.97438 * 15 14 13 17 17 O 1.42896 * 109.47431 * 105.02191 * 16 15 14 18 18 Si 1.86307 * 109.46681 * 345.02576 * 16 15 14 19 19 C 1.46495 * 106.99919 * 0.02562 * 15 14 13 20 20 C 1.39589 * 134.04001 * 180.02562 * 19 15 14 21 21 C 1.36661 * 119.76487 * 179.97438 * 20 19 15 22 22 C 1.38788 * 120.53106 * 0.02562 * 21 20 19 23 23 C 1.37787 * 120.66325 * 0.02562 * 22 21 20 24 24 C 1.37688 * 125.06644 * 84.71502 * 13 12 10 25 25 C 1.53781 * 87.08649 * 334.56685 * 7 6 4 26 26 H 1.09007 * 109.46846 * 299.99983 * 1 2 3 27 27 H 1.09007 * 109.47453 * 59.99610 * 1 2 3 28 28 H 1.08996 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47124 * 60.00087 * 3 2 1 30 30 H 1.09001 * 109.46975 * 300.00209 * 3 2 1 31 31 H 1.08999 * 113.61008 * 254.52793 * 6 4 3 32 32 H 1.09001 * 113.61614 * 25.34468 * 6 4 3 33 33 H 0.97002 * 119.99477 * 25.00218 * 9 7 6 34 34 H 1.09008 * 109.46866 * 300.00123 * 12 10 9 35 35 H 1.09005 * 109.47027 * 59.99367 * 12 10 9 36 36 H 1.08000 * 125.02799 * 359.95993 * 14 13 12 37 37 H 1.09000 * 109.47055 * 225.02878 * 16 15 14 38 38 H 0.96701 * 114.00500 * 180.02562 * 17 16 15 39 39 H 1.48492 * 109.99962 * 298.67806 * 18 16 15 40 40 H 1.48502 * 109.99896 * 60.00081 * 18 16 15 41 41 H 1.08003 * 120.11886 * 359.97438 * 20 19 15 42 42 H 1.08000 * 119.73472 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.66947 * 179.97438 * 22 21 20 44 44 H 1.08004 * 120.11415 * 180.02562 * 23 22 21 45 45 H 1.08998 * 113.61029 * 270.89062 * 25 7 6 46 46 H 1.08997 * 113.61702 * 139.98220 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9399 -0.0006 5 1 4.2443 1.2674 -0.6961 6 6 4.1962 3.4041 -0.1234 7 6 5.2875 3.0700 0.9072 8 1 6.2135 2.7075 0.4608 9 7 5.5085 4.1311 1.8929 10 6 6.6996 4.2360 2.5145 11 8 7.5886 3.4517 2.2583 12 6 6.9268 5.3272 3.5288 13 7 8.2900 5.2280 4.0560 14 6 8.6427 4.5746 5.2054 15 6 9.9671 4.6740 5.4005 16 6 10.7500 4.0930 6.5496 17 8 11.4739 2.9456 6.1009 18 14 9.5787 3.5952 7.9102 19 6 10.5068 5.4555 4.2851 20 6 11.7866 5.8868 3.9322 21 6 11.9650 6.6219 2.7940 22 6 10.8835 6.9437 1.9859 23 6 9.6116 6.5292 2.3160 24 6 9.4081 5.7732 3.4656 25 6 4.3619 1.9481 1.4069 26 1 -0.3633 0.5139 0.8901 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8032 2.2372 0.8900 30 1 1.8031 2.2371 -0.8900 31 1 4.5887 3.6584 -1.1080 32 1 3.4587 4.1215 0.2365 33 1 4.7974 4.7582 2.0980 34 1 6.7912 6.2989 3.0537 35 1 6.2124 5.2191 4.3449 36 1 7.9570 4.0559 5.8589 37 1 11.4492 4.8392 6.9269 38 1 12.0015 2.5190 6.7900 39 1 8.8428 4.7853 8.4074 40 1 8.6201 2.5781 7.4084 41 1 12.6329 5.6405 4.5564 42 1 12.9554 6.9550 2.5211 43 1 11.0403 7.5257 1.0897 44 1 8.7765 6.7843 1.6805 45 1 3.6703 2.2675 2.1864 46 1 4.8882 1.0272 1.6577 There are 61 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 61 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534458_9818708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 13:25:38 Heat of formation + Delta-G solvation = 29.630168 kcal Electronic energy + Delta-G solvation = -27499.377502 eV Core-core repulsion = 23676.442608 eV Total energy + Delta-G solvation = -3822.934894 eV No. of doubly occupied orbitals = 61 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.134 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.64957 -41.23131 -39.61493 -38.10713 -37.61125 -35.04241 -34.22196 -31.65455 -30.71034 -30.37070 -29.73271 -28.87300 -26.79929 -25.90809 -24.18315 -23.60273 -22.59470 -21.76755 -20.79305 -20.57080 -18.57093 -18.38048 -18.29797 -17.85246 -17.56114 -16.80198 -16.55145 -16.51569 -16.40744 -15.79670 -15.57342 -15.35355 -15.04969 -14.91889 -14.81195 -14.72913 -14.54163 -14.28501 -14.18793 -13.87789 -13.63825 -13.52197 -13.47202 -13.43420 -12.95148 -12.76709 -12.65549 -12.52477 -12.22056 -12.05544 -11.81527 -11.65066 -11.57294 -11.20165 -10.93174 -10.63928 -10.20820 -10.18261 -9.26530 -8.75628 -8.74249 -4.96663 0.03466 0.56342 0.69000 1.24126 1.32400 1.33061 1.57532 1.64331 1.69370 1.97773 2.10049 2.87366 3.34260 3.44161 3.47168 3.49103 3.57983 3.64870 3.68154 3.72134 3.81747 3.97023 3.99350 4.17131 4.17440 4.22302 4.25281 4.27722 4.29920 4.33991 4.47934 4.51178 4.60912 4.64322 4.68222 4.70437 4.74325 4.83176 4.83535 4.90875 4.97344 5.06629 5.13669 5.43648 5.45288 5.57941 5.64747 5.65585 6.04010 6.14939 6.37851 6.98743 7.04456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 S -0.333 6.333 3 C -0.055 4.055 4 C -0.091 4.091 5 H 0.088 0.912 6 C -0.114 4.114 7 C 0.117 3.883 8 H 0.086 0.914 9 N -0.698 5.698 10 C 0.490 3.510 11 O -0.575 6.575 12 C 0.086 3.914 13 N -0.468 5.468 14 C 0.052 3.948 15 C -0.181 4.181 16 C -0.052 4.052 17 O -0.571 6.571 18 Si 0.789 3.211 19 C -0.120 4.120 20 C -0.082 4.082 21 C -0.151 4.151 22 C -0.102 4.102 23 C -0.137 4.137 24 C 0.090 3.910 25 C -0.140 4.140 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.102 0.898 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.117 0.883 33 H 0.422 0.578 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.174 0.826 37 H 0.080 0.920 38 H 0.398 0.602 39 H -0.281 1.281 40 H -0.296 1.296 41 H 0.128 0.872 42 H 0.144 0.856 43 H 0.151 0.849 44 H 0.134 0.866 45 H 0.101 0.899 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.290 5.380 2.343 8.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 S -0.108 6.108 3 C -0.203 4.203 4 C -0.111 4.111 5 H 0.107 0.893 6 C -0.153 4.153 7 C 0.012 3.988 8 H 0.104 0.896 9 N -0.350 5.350 10 C 0.275 3.725 11 O -0.453 6.453 12 C -0.038 4.038 13 N -0.151 5.151 14 C -0.074 4.074 15 C -0.188 4.188 16 C -0.161 4.161 17 O -0.380 6.380 18 Si 0.693 3.307 19 C -0.124 4.124 20 C -0.101 4.101 21 C -0.170 4.170 22 C -0.121 4.121 23 C -0.157 4.157 24 C -0.015 4.015 25 C -0.179 4.179 26 H 0.105 0.895 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.103 0.897 32 H 0.135 0.865 33 H 0.261 0.739 34 H 0.168 0.832 35 H 0.173 0.827 36 H 0.191 0.809 37 H 0.098 0.902 38 H 0.249 0.751 39 H -0.207 1.207 40 H -0.223 1.223 41 H 0.146 0.854 42 H 0.162 0.838 43 H 0.168 0.832 44 H 0.152 0.848 45 H 0.119 0.881 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -6.448 4.089 1.764 7.837 hybrid contribution -0.932 0.945 -0.581 1.449 sum -7.380 5.034 1.183 9.012 Atomic orbital electron populations 1.23397 0.91349 1.07177 1.05859 1.87386 1.10638 1.14534 1.98210 1.23367 0.98554 0.92216 1.06167 1.22033 0.92907 0.98260 0.97896 0.89346 1.23349 0.96836 0.95711 0.99445 1.22425 0.97849 0.88444 0.90128 0.89586 1.45768 1.14312 1.33417 1.41545 1.21468 0.82614 0.85936 0.82450 1.90814 1.44662 1.44765 1.65038 1.22005 0.82411 1.00204 0.99180 1.43384 1.06152 1.45905 1.19610 1.21709 0.96232 0.99165 0.90257 1.20059 0.92829 1.06663 0.99255 1.24337 1.01566 0.90216 0.99942 1.86514 1.65985 1.43373 1.42174 0.94144 0.78301 0.78316 0.79987 1.19364 0.93956 1.02699 0.96401 1.20501 0.94926 0.97110 0.97515 1.20984 1.00232 1.00539 0.95249 1.21201 0.91305 0.99441 1.00136 1.20274 0.98994 1.01142 0.95284 1.18500 0.86215 1.00112 0.96716 1.23526 0.98566 0.98451 0.97377 0.89462 0.89465 0.87889 0.88514 0.88549 0.89731 0.86504 0.73921 0.83188 0.82682 0.80907 0.90188 0.75122 1.20747 1.22324 0.85411 0.83807 0.83159 0.84775 0.88104 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.35 10.76 113.37 1.22 1.57 16 2 S -0.33 -0.80 22.37 -56.49 -1.26 -2.07 16 3 C -0.06 0.23 5.78 71.98 0.42 0.64 16 4 C -0.09 0.28 3.66 -10.26 -0.04 0.25 16 5 H 0.09 0.04 8.13 -2.39 -0.02 0.02 16 6 C -0.11 0.80 7.39 31.12 0.23 1.03 16 7 C 0.12 -0.15 4.24 45.51 0.19 0.05 16 8 H 0.09 0.50 7.46 -2.38 -0.02 0.48 16 9 N -0.70 3.03 5.35 -440.03 -2.36 0.67 16 10 C 0.49 1.56 7.90 87.66 0.69 2.25 16 11 O -0.57 -9.26 16.02 -3.04 -0.05 -9.30 16 12 C 0.09 -0.22 6.48 85.63 0.55 0.33 16 13 N -0.47 -3.49 2.27 -519.97 -1.18 -4.67 16 14 C 0.05 0.49 9.89 83.00 0.82 1.31 16 15 C -0.18 -2.10 5.61 -18.63 -0.10 -2.21 16 16 C -0.05 -0.27 3.05 71.23 0.22 -0.05 16 17 O -0.57 -3.84 12.86 -148.98 -1.92 -5.76 16 18 Si 0.79 0.04 30.79 68.60 2.11 2.15 16 19 C -0.12 -1.62 6.35 -20.20 -0.13 -1.75 16 20 C -0.08 -0.87 10.05 22.23 0.22 -0.64 16 21 C -0.15 -1.06 9.97 22.03 0.22 -0.84 16 22 C -0.10 -0.59 10.01 22.29 0.22 -0.37 16 23 C -0.14 -1.01 10.00 22.37 0.22 -0.79 16 24 C 0.09 1.00 6.80 39.03 0.27 1.27 16 25 C -0.14 0.15 7.43 31.12 0.23 0.38 16 26 H 0.09 -0.46 8.14 -2.39 -0.02 -0.48 16 27 H 0.09 -0.45 8.14 -2.39 -0.02 -0.47 16 28 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 29 H 0.10 -0.66 7.84 -2.39 -0.02 -0.68 16 30 H 0.10 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H 0.08 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.12 -1.41 8.08 -2.39 -0.02 -1.43 16 33 H 0.42 -5.36 8.73 -92.71 -0.81 -6.17 16 34 H 0.15 -1.36 8.14 -2.38 -0.02 -1.38 16 35 H 0.16 -1.54 8.12 -2.38 -0.02 -1.56 16 36 H 0.17 0.92 6.30 -2.91 -0.02 0.90 16 37 H 0.08 0.15 7.96 -2.39 -0.02 0.13 16 38 H 0.40 -1.98 8.74 -74.06 -0.65 -2.63 16 39 H -0.28 -1.10 7.11 99.48 0.71 -0.39 16 40 H -0.30 -1.99 7.04 99.48 0.70 -1.29 16 41 H 0.13 1.00 8.06 -2.91 -0.02 0.98 16 42 H 0.14 0.26 8.06 -2.91 -0.02 0.24 16 43 H 0.15 -0.02 8.06 -2.91 -0.02 -0.04 16 44 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 45 H 0.10 -0.39 7.90 -2.39 -0.02 -0.41 16 46 H 0.05 0.23 8.14 -2.39 -0.02 0.21 16 Total: 0.00 -32.18 397.66 0.38 -31.80 By element: Atomic # 1 Polarization: -14.83 SS G_CDS: -0.43 Total: -15.26 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.46 Total: 2.44 kcal Atomic # 7 Polarization: -0.47 SS G_CDS: -3.54 Total: -4.00 kcal Atomic # 8 Polarization: -13.10 SS G_CDS: -1.96 Total: -15.06 kcal Atomic # 14 Polarization: 0.04 SS G_CDS: 2.11 Total: 2.15 kcal Atomic # 16 Polarization: -0.80 SS G_CDS: -1.26 Total: -2.07 kcal Total: -32.18 0.38 -31.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534458_9818708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.431 kcal (2) G-P(sol) polarization free energy of solvation -32.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds