Wall clock time and date at job start Tue Mar 9 2021 12:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38967 * 119.95901 * 2 1 4 4 O 1.35716 * 119.91204 * 0.02562 * 3 2 1 5 5 C 1.39020 * 120.18256 * 179.97438 * 3 2 1 6 6 C 1.50699 * 119.95933 * 180.02562 * 5 3 2 7 7 O 1.42894 * 109.47188 * 75.00182 * 6 5 3 8 8 Si 1.86298 * 109.46950 * 195.00855 * 6 5 3 9 9 C 1.37679 * 120.08375 * 0.28545 * 5 3 2 10 10 C 1.39760 * 119.91299 * 359.46812 * 9 5 3 11 11 C 1.47601 * 120.08889 * 180.29717 * 10 9 5 12 12 O 1.21577 * 120.00156 * 0.20710 * 11 10 9 13 13 N 1.34775 * 119.99506 * 180.20972 * 11 10 9 14 14 C 1.46499 * 119.99524 * 180.02562 * 13 11 10 15 15 H 1.08996 * 112.85382 * 336.19188 * 14 13 11 16 16 C 1.53784 * 113.61665 * 107.49936 * 14 13 11 17 17 C 1.53785 * 87.08078 * 89.11653 * 16 14 13 18 18 H 1.09001 * 113.61360 * 270.88424 * 17 16 14 19 19 C 1.52995 * 113.69285 * 139.99274 * 17 16 14 20 20 S 1.81401 * 109.47143 * 87.46627 * 19 17 16 21 21 C 1.81397 * 101.92125 * 180.02562 * 20 19 17 22 22 O 1.42102 * 108.57655 * 294.48602 * 20 19 17 23 23 O 1.42092 * 108.58039 * 65.51333 * 20 19 17 24 24 C 1.53783 * 87.08166 * 25.43204 * 17 16 14 25 25 C 1.37725 * 119.95338 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47170 * 90.00061 * 1 2 3 27 27 H 1.09002 * 109.47306 * 210.00014 * 1 2 3 28 28 H 1.08998 * 109.47191 * 329.99534 * 1 2 3 29 29 H 0.96703 * 113.99672 * 269.97688 * 4 3 2 30 30 H 1.09006 * 109.46662 * 315.00451 * 6 5 3 31 31 H 0.96709 * 113.99337 * 60.00344 * 7 6 5 32 32 H 1.48506 * 109.99834 * 180.02562 * 8 6 5 33 33 H 1.48502 * 110.00011 * 301.31529 * 8 6 5 34 34 H 1.08001 * 120.04359 * 179.73723 * 9 5 3 35 35 H 0.97002 * 120.00733 * 359.97438 * 13 11 10 36 36 H 1.08997 * 113.61407 * 203.66051 * 16 14 13 37 37 H 1.08997 * 113.61412 * 334.57013 * 16 14 13 38 38 H 1.08997 * 109.47158 * 207.46250 * 19 17 16 39 39 H 1.09001 * 109.47303 * 327.46206 * 19 17 16 40 40 H 1.08999 * 109.47362 * 59.99971 * 21 20 19 41 41 H 1.09000 * 109.46907 * 179.97438 * 21 20 19 42 42 H 1.08999 * 109.47240 * 299.99564 * 21 20 19 43 43 H 1.08996 * 113.61554 * 220.02191 * 24 17 16 44 44 H 1.09005 * 113.61142 * 89.11926 * 24 17 16 45 45 H 1.08002 * 120.04873 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2040 0.0000 4 8 1.5197 2.3778 0.0005 5 6 3.5911 1.2094 0.0005 6 6 4.3386 2.5180 0.0011 7 8 4.2716 3.1042 1.3025 8 14 6.1199 2.2158 -0.4531 9 6 4.2859 0.0208 -0.0049 10 6 3.5918 -1.1923 0.0004 11 6 4.3328 -2.4688 0.0012 12 8 5.5486 -2.4660 0.0012 13 7 3.6615 -3.6375 0.0020 14 6 4.3970 -4.9045 0.0034 15 1 5.4044 -4.8097 -0.4017 16 6 4.3393 -5.6488 1.3479 17 6 3.0623 -6.3292 0.8268 18 1 2.1503 -5.7760 1.0509 19 6 2.9629 -7.8117 1.1919 20 16 2.1804 -7.9824 2.8195 21 6 2.1677 -9.7826 3.0422 22 8 3.0396 -7.4118 3.7970 23 8 0.8374 -7.5278 2.7261 24 6 3.6020 -6.0789 -0.5913 25 6 2.1946 -1.1933 0.0005 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3634 -0.8900 0.5138 28 1 -0.3633 0.8899 0.5139 29 1 1.3223 2.7183 -0.8828 30 1 3.8880 3.1940 -0.7256 31 1 4.6552 2.5561 2.0009 32 1 6.8681 3.4986 -0.4555 33 1 6.7368 1.2704 0.5118 34 1 5.3659 0.0258 -0.0087 35 1 2.6915 -3.6398 0.0023 36 1 5.1696 -6.3380 1.5014 37 1 4.1676 -4.9942 2.2023 38 1 2.3630 -8.3305 0.4442 39 1 3.9620 -8.2464 1.2216 40 1 3.1904 -10.1589 3.0177 41 1 1.7141 -10.0266 4.0028 42 1 1.5915 -10.2439 2.2402 43 1 2.8352 -5.7715 -1.3023 44 1 4.2308 -6.8857 -0.9679 45 1 1.6546 -2.1286 0.0014 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_13287732.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:27 Heat of formation + Delta-G solvation = -119.348937 kcal Electronic energy + Delta-G solvation = -29600.960788 eV Core-core repulsion = 25292.934910 eV Total energy + Delta-G solvation = -4308.025878 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -41.85470 -41.02554 -39.51085 -38.01180 -37.90392 -37.48292 -37.04686 -34.91195 -34.01655 -32.10732 -31.04324 -30.33880 -28.09900 -26.94051 -26.90998 -25.37071 -23.89066 -22.13928 -21.67854 -20.53232 -19.95306 -19.61474 -18.86367 -18.12106 -17.84129 -17.38937 -17.23908 -17.13313 -16.83185 -16.52850 -16.12197 -16.04715 -15.81344 -15.70019 -15.35117 -15.05214 -14.73422 -14.50450 -14.42146 -14.32416 -14.23354 -14.08915 -13.88524 -13.69192 -13.30651 -13.22222 -13.10599 -13.03249 -13.01033 -12.81961 -12.60881 -12.38112 -12.31594 -12.03875 -11.73856 -11.64977 -11.52969 -11.22487 -11.00417 -10.54555 -10.21273 -10.01872 -9.67938 -4.94327 -1.12508 -0.40049 0.04740 1.26199 1.63055 1.64072 1.64344 1.93970 1.98383 2.52498 2.56002 2.86048 3.03335 3.16475 3.20976 3.30934 3.39553 3.49789 3.50480 3.59716 3.68112 3.69700 3.74044 3.88216 3.93228 4.07810 4.15584 4.22328 4.27373 4.43677 4.50411 4.52835 4.54007 4.55328 4.60164 4.62423 4.69425 4.77060 4.90652 4.93112 4.98607 5.06389 5.08845 5.25834 5.42273 5.52358 6.35230 6.42704 6.55288 7.11127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.117 4.117 3 C 0.162 3.838 4 O -0.484 6.484 5 C -0.149 4.149 6 C -0.061 4.061 7 O -0.521 6.521 8 Si 0.680 3.320 9 C -0.052 4.052 10 C -0.139 4.139 11 C 0.565 3.435 12 O -0.529 6.529 13 N -0.711 5.711 14 C 0.119 3.881 15 H 0.112 0.888 16 C -0.152 4.152 17 C -0.107 4.107 18 H 0.104 0.896 19 C -0.602 4.602 20 S 2.418 3.582 21 C -0.659 4.659 22 O -0.933 6.933 23 O -0.940 6.940 24 C -0.129 4.129 25 C -0.065 4.065 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.394 0.606 30 H 0.117 0.883 31 H 0.375 0.625 32 H -0.253 1.253 33 H -0.255 1.255 34 H 0.146 0.854 35 H 0.401 0.599 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.610 -5.611 -6.219 8.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.117 4.117 3 C 0.116 3.884 4 O -0.294 6.294 5 C -0.150 4.150 6 C -0.171 4.171 7 O -0.327 6.327 8 Si 0.581 3.419 9 C -0.071 4.071 10 C -0.142 4.142 11 C 0.353 3.647 12 O -0.405 6.405 13 N -0.363 5.363 14 C 0.014 3.986 15 H 0.130 0.870 16 C -0.190 4.190 17 C -0.127 4.127 18 H 0.122 0.878 19 C -0.730 4.730 20 S 2.600 3.400 21 C -0.808 4.808 22 O -0.931 6.931 23 O -0.937 6.937 24 C -0.168 4.168 25 C -0.084 4.084 26 H 0.092 0.908 27 H 0.090 0.910 28 H 0.096 0.904 29 H 0.252 0.748 30 H 0.135 0.865 31 H 0.223 0.777 32 H -0.178 1.178 33 H -0.180 1.180 34 H 0.163 0.837 35 H 0.237 0.763 36 H 0.120 0.880 37 H 0.102 0.898 38 H 0.154 0.846 39 H 0.154 0.846 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.147 0.853 43 H 0.099 0.901 44 H 0.121 0.879 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -1.467 -4.481 -5.110 6.953 hybrid contribution -0.614 -0.944 0.215 1.146 sum -2.081 -5.424 -4.896 7.597 Atomic orbital electron populations 1.20745 0.89668 1.03924 1.02849 1.20215 0.97346 0.92064 1.02124 1.18309 0.88774 0.85270 0.95998 1.84788 1.75616 1.35647 1.33390 1.20597 0.93833 0.95908 1.04647 1.24833 1.10127 0.93490 0.88693 1.86652 1.82678 1.47234 1.16101 0.95034 0.74454 0.81156 0.91237 1.21147 1.00869 0.90194 0.94886 1.19774 0.93436 0.93293 1.07738 1.18137 0.87234 0.83489 0.75840 1.90814 1.13268 1.87426 1.49031 1.45582 1.10147 1.04968 1.75610 1.21838 0.97540 0.82264 0.96975 0.87025 1.23657 0.97173 0.99800 0.98408 1.22374 0.99901 0.91312 0.99079 0.87809 1.30309 1.14638 1.04811 1.23268 1.07950 0.75971 0.78254 0.77853 1.30297 1.11654 1.26660 1.12170 1.93627 1.68051 1.74903 1.56475 1.93614 1.34647 1.78890 1.86530 1.23348 1.00104 0.97995 0.95395 1.21115 0.92579 0.97870 0.96865 0.90765 0.91005 0.90368 0.74799 0.86545 0.77732 1.17817 1.17968 0.83706 0.76295 0.88045 0.89808 0.84552 0.84587 0.85282 0.85129 0.85337 0.90070 0.87859 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.23 9.78 36.00 0.35 0.59 16 2 C -0.12 0.05 5.89 -104.54 -0.62 -0.56 16 3 C 0.16 0.07 6.66 -39.02 -0.26 -0.19 16 4 O -0.48 0.01 11.84 -18.85 -0.22 -0.22 16 5 C -0.15 -0.10 5.27 -104.54 -0.55 -0.65 16 6 C -0.06 -0.03 2.37 36.01 0.09 0.06 16 7 O -0.52 -1.30 12.88 -35.23 -0.45 -1.75 16 8 Si 0.68 0.13 30.23 -169.99 -5.14 -5.01 16 9 C -0.05 -0.07 8.20 -39.22 -0.32 -0.39 16 10 C -0.14 -0.13 5.88 -104.95 -0.62 -0.75 16 11 C 0.57 1.15 7.76 -12.44 -0.10 1.06 16 12 O -0.53 -2.96 15.94 5.30 0.08 -2.87 16 13 N -0.71 0.64 5.21 -54.04 -0.28 0.35 16 14 C 0.12 -0.15 4.32 -67.11 -0.29 -0.44 16 15 H 0.11 0.00 7.46 -51.93 -0.39 -0.39 16 16 C -0.15 0.20 7.43 -25.92 -0.19 0.00 16 17 C -0.11 0.32 3.53 -89.81 -0.32 0.00 16 18 H 0.10 -0.32 8.13 -51.93 -0.42 -0.74 16 19 C -0.60 2.96 5.64 37.16 0.21 3.17 16 20 S 2.42 -5.21 5.35 -107.50 -0.58 -5.78 16 21 C -0.66 3.15 10.62 101.05 1.07 4.22 16 22 O -0.93 -1.92 18.10 -57.83 -1.05 -2.97 16 23 O -0.94 -1.78 18.10 -57.83 -1.05 -2.82 16 24 C -0.13 0.49 7.39 -25.92 -0.19 0.29 16 25 C -0.07 0.06 9.18 -39.22 -0.36 -0.30 16 26 H 0.07 -0.24 8.14 -51.93 -0.42 -0.66 16 27 H 0.07 -0.19 8.08 -51.93 -0.42 -0.61 16 28 H 0.08 -0.09 7.52 -51.93 -0.39 -0.48 16 29 H 0.39 -1.81 9.06 45.56 0.41 -1.40 16 30 H 0.12 -0.11 7.82 -51.93 -0.41 -0.51 16 31 H 0.38 -0.01 8.70 45.56 0.40 0.39 16 32 H -0.25 -0.78 7.11 56.52 0.40 -0.38 16 33 H -0.25 -0.71 6.69 56.52 0.38 -0.33 16 34 H 0.15 0.26 4.43 -52.49 -0.23 0.03 16 35 H 0.40 -1.35 6.72 -40.82 -0.27 -1.62 16 36 H 0.10 -0.23 7.90 -51.93 -0.41 -0.64 16 37 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 38 H 0.14 -0.98 8.14 -51.93 -0.42 -1.40 16 39 H 0.14 -0.94 7.85 -51.92 -0.41 -1.35 16 40 H 0.13 -0.83 8.14 -51.92 -0.42 -1.25 16 41 H 0.13 -0.57 8.14 -51.92 -0.42 -1.00 16 42 H 0.13 -0.83 8.14 -51.92 -0.42 -1.26 16 43 H 0.08 -0.35 8.14 -51.93 -0.42 -0.78 16 44 H 0.10 -0.50 8.10 -51.93 -0.42 -0.92 16 45 H 0.13 -0.48 6.39 -52.49 -0.34 -0.82 16 LS Contribution 386.54 15.07 5.83 5.83 Total: 0.00 -15.20 386.54 -10.43 -25.63 By element: Atomic # 1 Polarization: -11.02 SS G_CDS: -5.48 Total: -16.49 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: -2.09 Total: 6.12 kcal Atomic # 7 Polarization: 0.64 SS G_CDS: -0.28 Total: 0.35 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: -2.69 Total: -10.63 kcal Atomic # 14 Polarization: 0.13 SS G_CDS: -5.14 Total: -5.01 kcal Atomic # 16 Polarization: -5.21 SS G_CDS: -0.58 Total: -5.78 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -15.20 -10.43 -25.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13287732.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.720 kcal (2) G-P(sol) polarization free energy of solvation -15.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds