Wall clock time and date at job start Tue Mar 9 2021 12:52:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42099 * 108.57494 * 2 1 4 4 O 1.42093 * 108.57831 * 131.02445 * 2 1 3 5 5 C 1.81393 * 101.92151 * 245.51493 * 2 1 3 6 6 C 1.53003 * 109.47289 * 179.97438 * 5 2 1 7 7 H 1.09000 * 112.84820 * 43.80361 * 6 5 2 8 8 C 1.53777 * 113.61413 * 174.99969 * 6 5 2 9 9 C 1.53780 * 87.08327 * 139.98271 * 8 6 5 10 10 H 1.08992 * 113.61779 * 220.01539 * 9 8 6 11 11 N 1.46501 * 113.61319 * 89.11124 * 9 8 6 12 12 C 1.34783 * 119.99592 * 155.00280 * 11 9 8 13 13 O 1.21579 * 120.00079 * 0.02562 * 12 11 9 14 14 C 1.47537 * 119.99517 * 179.97438 * 12 11 9 15 15 C 1.40138 * 120.18734 * 180.02562 * 14 12 11 16 16 O 1.35655 * 120.15422 * 359.97438 * 15 14 12 17 17 C 1.38710 * 119.70016 * 179.97438 * 15 14 12 18 18 C 1.38055 * 120.08217 * 0.02562 * 17 15 14 19 19 C 1.50705 * 119.80662 * 180.02562 * 18 17 15 20 20 O 1.42900 * 109.46800 * 65.00365 * 19 18 17 21 21 Si 1.86294 * 109.47303 * 185.00270 * 19 18 17 22 22 C 1.38552 * 120.39275 * 359.97438 * 18 17 15 23 23 C 1.37785 * 120.29660 * 359.73626 * 22 18 17 24 24 C 1.53781 * 113.61450 * 272.49561 * 6 5 2 25 25 H 1.09002 * 109.47124 * 174.48534 * 1 2 3 26 26 H 1.09001 * 109.46975 * 54.48655 * 1 2 3 27 27 H 1.09004 * 109.47147 * 294.48618 * 1 2 3 28 28 H 1.09005 * 109.47147 * 299.99853 * 5 2 1 29 29 H 1.09008 * 109.47605 * 59.99893 * 5 2 1 30 30 H 1.09003 * 113.61496 * 254.53091 * 8 6 5 31 31 H 1.08994 * 113.61768 * 25.34753 * 8 6 5 32 32 H 0.96997 * 120.00442 * 335.00654 * 11 9 8 33 33 H 0.96702 * 113.99785 * 90.00174 * 16 15 14 34 34 H 1.07999 * 119.95936 * 180.02562 * 17 15 14 35 35 H 1.08999 * 109.47041 * 305.01074 * 19 18 17 36 36 H 0.96701 * 113.99722 * 59.99789 * 20 19 18 37 37 H 1.48501 * 109.99971 * 58.68478 * 21 19 18 38 38 H 1.48505 * 109.99969 * 179.97438 * 21 19 18 39 39 H 1.07998 * 119.84890 * 179.97438 * 22 18 17 40 40 H 1.08004 * 120.04434 * 180.27734 * 23 22 18 41 41 H 1.08993 * 113.61563 * 334.57011 * 24 6 5 42 42 H 1.09004 * 113.61170 * 105.46624 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8841 1.0161 5 6 2.1887 -0.7356 -1.6152 6 6 3.7055 -0.8183 -1.7985 7 1 4.2206 -1.1760 -0.9069 8 6 4.1318 -1.5403 -3.0876 9 6 5.2283 -0.4717 -3.2301 10 1 5.3773 -0.1329 -4.2553 11 7 6.4817 -0.8237 -2.5582 12 6 7.6454 -0.2908 -2.9805 13 8 7.6550 0.4822 -3.9189 14 6 8.9075 -0.6449 -2.3034 15 6 10.1197 -0.0929 -2.7389 16 8 10.1387 0.7696 -3.7858 17 6 11.3003 -0.4324 -2.0946 18 6 11.2796 -1.3106 -1.0297 19 6 12.5658 -1.6747 -0.3338 20 8 13.1094 -0.5149 0.2997 21 14 12.2291 -2.9828 0.9491 22 6 10.0831 -1.8586 -0.5961 23 6 8.9004 -1.5278 -1.2207 24 6 4.3236 0.4546 -2.4004 25 1 -0.3633 -1.0229 -0.0988 26 1 -0.3633 0.5970 -0.8365 27 1 -0.3634 0.4260 0.9353 28 1 1.7611 -1.7369 -1.6665 29 1 1.7610 -0.1170 -2.4043 30 1 4.5202 -2.5445 -2.9176 31 1 3.3806 -1.5050 -3.8766 32 1 6.4740 -1.4402 -1.8093 33 1 10.0354 1.6973 -3.5331 34 1 12.2368 -0.0091 -2.4265 35 1 13.2785 -2.0572 -1.0645 36 1 12.5275 -0.1203 0.9637 37 1 11.6340 -4.1825 0.3073 38 1 13.4899 -3.3510 1.6421 39 1 10.0772 -2.5450 0.2376 40 1 7.9695 -1.9538 -0.8765 41 1 3.6255 1.0366 -3.0020 42 1 4.8669 1.0610 -1.6756 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_13422076.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:53 Heat of formation + Delta-G solvation = -113.938806 kcal Electronic energy + Delta-G solvation = -27450.732463 eV Core-core repulsion = 23298.478805 eV Total energy + Delta-G solvation = -4152.253658 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 342.106 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.80482 -40.79250 -39.24923 -38.32498 -38.01049 -37.16362 -37.04663 -34.79409 -32.84024 -31.18407 -31.12645 -30.39723 -27.56199 -26.92507 -24.62448 -23.96674 -23.35279 -21.82783 -20.51019 -19.96449 -19.41428 -18.77645 -18.20733 -17.84508 -17.40494 -17.22622 -17.12944 -16.68826 -16.48571 -16.32513 -16.03359 -15.76148 -15.61168 -15.31182 -15.11794 -14.85691 -14.47688 -14.36560 -14.30609 -14.21038 -13.85679 -13.68381 -13.32300 -13.14041 -13.08132 -13.00734 -12.98406 -12.59444 -12.32965 -12.30482 -12.17181 -12.03318 -11.69398 -11.51399 -11.21233 -10.85325 -10.54544 -10.21040 -10.06473 -9.81162 -5.12479 -1.12240 -0.43011 0.08532 1.16722 1.54567 1.64518 1.73969 1.89754 1.97192 2.52398 2.55548 2.86441 3.07979 3.17667 3.21834 3.35653 3.40829 3.41195 3.57595 3.60533 3.69871 3.71402 3.74900 3.88798 3.95941 4.08452 4.18726 4.23914 4.30960 4.51885 4.53570 4.55231 4.55661 4.67084 4.69768 4.78522 4.91339 4.93986 4.94604 5.10585 5.17979 5.47034 5.51312 6.39729 6.44865 6.69987 7.18371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.933 6.933 4 O -0.940 6.940 5 C -0.602 4.602 6 C -0.107 4.107 7 H 0.104 0.896 8 C -0.130 4.130 9 C 0.121 3.879 10 H 0.110 0.890 11 N -0.713 5.713 12 C 0.563 3.437 13 O -0.514 6.514 14 C -0.165 4.165 15 C 0.174 3.826 16 O -0.477 6.477 17 C -0.129 4.129 18 C -0.076 4.076 19 C -0.074 4.074 20 O -0.536 6.536 21 Si 0.691 3.309 22 C -0.134 4.134 23 C -0.065 4.065 24 C -0.151 4.151 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.136 0.864 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.400 0.600 33 H 0.399 0.601 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.380 0.620 37 H -0.256 1.256 38 H -0.253 1.253 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.100 0.900 42 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.448 -2.467 2.329 6.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.601 3.399 3 O -0.931 6.931 4 O -0.937 6.937 5 C -0.731 4.731 6 C -0.126 4.126 7 H 0.122 0.878 8 C -0.170 4.170 9 C 0.015 3.985 10 H 0.128 0.872 11 N -0.366 5.366 12 C 0.350 3.650 13 O -0.389 6.389 14 C -0.169 4.169 15 C 0.127 3.873 16 O -0.288 6.288 17 C -0.147 4.147 18 C -0.076 4.076 19 C -0.185 4.185 20 O -0.342 6.342 21 Si 0.592 3.408 22 C -0.152 4.152 23 C -0.084 4.084 24 C -0.189 4.189 25 H 0.147 0.853 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.154 0.846 29 H 0.154 0.846 30 H 0.099 0.901 31 H 0.121 0.879 32 H 0.236 0.764 33 H 0.257 0.743 34 H 0.158 0.842 35 H 0.135 0.865 36 H 0.228 0.772 37 H -0.180 1.180 38 H -0.177 1.177 39 H 0.154 0.846 40 H 0.152 0.848 41 H 0.119 0.881 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.138 -3.037 1.831 5.450 hybrid contribution -0.746 -0.109 -0.602 0.964 sum -4.884 -3.146 1.229 5.938 Atomic orbital electron populations 1.30301 1.26881 1.11595 1.12020 1.07927 0.78301 0.75979 0.77737 1.93624 1.78828 1.34211 1.86396 1.93613 1.79069 1.67116 1.53878 1.30320 1.04998 1.14175 1.23579 1.22370 0.90744 0.99595 0.99887 0.87763 1.23348 0.97916 0.98605 0.97084 1.21803 0.82549 0.96098 0.98052 0.87172 1.45594 1.05954 1.48822 1.36244 1.18036 0.83063 0.80651 0.83244 1.90837 1.86618 1.34114 1.27379 1.20389 0.93504 1.03723 0.99258 1.18503 0.90515 0.92090 0.86153 1.84756 1.94929 1.20092 1.29020 1.21349 0.98488 0.99625 0.95270 1.20456 0.95478 0.95948 0.95760 1.25187 0.94327 0.96792 1.02166 1.86540 1.46150 1.43738 1.57746 0.94743 0.84388 0.78107 0.83568 1.20931 0.91881 1.01350 1.01010 1.21156 0.98629 0.95141 0.93435 1.23649 0.99129 0.95969 1.00194 0.85349 0.85293 0.85128 0.84577 0.84614 0.90131 0.87926 0.76426 0.74251 0.84180 0.86481 0.77206 1.18029 1.17749 0.84623 0.84793 0.88113 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.27 10.62 101.05 1.07 4.34 16 2 S 2.42 -5.90 5.35 -107.50 -0.58 -6.48 16 3 O -0.93 -1.55 18.10 -57.83 -1.05 -2.60 16 4 O -0.94 -1.45 18.10 -57.83 -1.05 -2.49 16 5 C -0.60 3.01 5.64 37.16 0.21 3.22 16 6 C -0.11 0.33 3.53 -89.81 -0.32 0.01 16 7 H 0.10 -0.34 8.13 -51.93 -0.42 -0.77 16 8 C -0.13 0.45 7.39 -25.92 -0.19 0.26 16 9 C 0.12 -0.13 4.32 -67.12 -0.29 -0.42 16 10 H 0.11 0.06 7.46 -51.93 -0.39 -0.33 16 11 N -0.71 0.55 5.21 -54.06 -0.28 0.26 16 12 C 0.56 1.31 7.76 -12.47 -0.10 1.21 16 13 O -0.51 -3.05 14.76 -16.58 -0.24 -3.29 16 14 C -0.17 -0.18 5.89 -104.84 -0.62 -0.79 16 15 C 0.17 0.33 6.72 -38.69 -0.26 0.07 16 16 O -0.48 -1.36 11.58 -40.54 -0.47 -1.83 16 17 C -0.13 -0.09 9.60 -39.47 -0.38 -0.47 16 18 C -0.08 0.05 5.35 -104.57 -0.56 -0.51 16 19 C -0.07 0.08 2.79 36.01 0.10 0.18 16 20 O -0.54 0.34 12.83 -35.23 -0.45 -0.11 16 21 Si 0.69 -1.42 29.78 -169.99 -5.06 -6.48 16 22 C -0.13 0.26 8.64 -39.63 -0.34 -0.09 16 23 C -0.06 0.11 9.53 -39.20 -0.37 -0.27 16 24 C -0.15 0.22 7.43 -25.92 -0.19 0.03 16 25 H 0.13 -0.85 8.14 -51.92 -0.42 -1.27 16 26 H 0.13 -0.84 8.14 -51.92 -0.42 -1.27 16 27 H 0.13 -0.60 8.14 -51.92 -0.42 -1.02 16 28 H 0.14 -0.97 8.14 -51.92 -0.42 -1.40 16 29 H 0.14 -0.94 7.84 -51.92 -0.41 -1.35 16 30 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 31 H 0.10 -0.46 8.10 -51.93 -0.42 -0.88 16 32 H 0.40 -1.36 6.73 -40.82 -0.27 -1.63 16 33 H 0.40 -0.34 9.06 45.56 0.41 0.08 16 34 H 0.14 0.06 8.06 -52.49 -0.42 -0.36 16 35 H 0.12 -0.07 7.96 -51.93 -0.41 -0.48 16 36 H 0.38 -1.75 8.70 45.56 0.40 -1.36 16 37 H -0.26 -0.05 7.11 56.52 0.40 0.35 16 38 H -0.25 -0.36 7.11 56.52 0.40 0.04 16 39 H 0.14 -0.57 4.88 -52.49 -0.26 -0.83 16 40 H 0.13 -0.62 6.40 -52.48 -0.34 -0.95 16 41 H 0.10 -0.24 7.89 -51.93 -0.41 -0.65 16 42 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 LS Contribution 365.23 15.07 5.50 5.50 Total: 0.00 -15.38 365.23 -10.59 -25.96 By element: Atomic # 1 Polarization: -10.57 SS G_CDS: -4.68 Total: -15.24 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -2.24 Total: 6.79 kcal Atomic # 7 Polarization: 0.55 SS G_CDS: -0.28 Total: 0.26 kcal Atomic # 8 Polarization: -7.06 SS G_CDS: -3.26 Total: -10.32 kcal Atomic # 14 Polarization: -1.42 SS G_CDS: -5.06 Total: -6.48 kcal Atomic # 16 Polarization: -5.90 SS G_CDS: -0.58 Total: -6.48 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -15.38 -10.59 -25.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13422076.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.976 kcal (2) G-P(sol) polarization free energy of solvation -15.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds