Wall clock time and date at job start Tue Mar 9 2021 12:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37782 * 119.85381 * 2 1 4 4 C 1.39701 * 119.91509 * 180.02562 * 3 2 1 5 5 C 1.47536 * 120.19788 * 180.02562 * 4 3 2 6 6 O 1.21582 * 120.00213 * 179.97438 * 5 4 3 7 7 N 1.34776 * 119.99414 * 359.97116 * 5 4 3 8 8 C 1.46500 * 119.99641 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.85287 * 336.19643 * 8 7 5 10 10 C 1.53778 * 113.61389 * 107.50691 * 8 7 5 11 11 C 1.53785 * 87.08121 * 89.11394 * 10 8 7 12 12 H 1.08993 * 113.61488 * 270.88389 * 11 10 8 13 13 C 1.53011 * 113.68809 * 139.99222 * 11 10 8 14 14 S 1.81393 * 109.46923 * 87.46640 * 13 11 10 15 15 C 1.81399 * 101.91972 * 179.97438 * 14 13 11 16 16 O 1.42097 * 108.58271 * 294.48468 * 14 13 11 17 17 O 1.42104 * 108.57875 * 65.51079 * 14 13 11 18 18 C 1.53783 * 87.08018 * 25.43541 * 11 10 8 19 19 C 1.40141 * 119.61499 * 359.97438 * 4 3 2 20 20 O 1.35654 * 120.15202 * 179.97438 * 19 4 3 21 21 C 1.38711 * 119.70143 * 0.02562 * 19 4 3 22 22 C 1.50699 * 119.96142 * 179.97438 * 21 19 4 23 23 O 1.42907 * 109.46603 * 75.00294 * 22 21 19 24 24 Si 1.86298 * 109.47032 * 194.99597 * 22 21 19 25 25 C 1.38061 * 120.07747 * 0.27120 * 21 19 4 26 26 H 1.08993 * 109.47244 * 89.99991 * 1 2 3 27 27 H 1.09000 * 109.46758 * 210.00083 * 1 2 3 28 28 H 1.08994 * 109.46673 * 329.99624 * 1 2 3 29 29 H 1.08007 * 120.03923 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00740 * 0.02562 * 7 5 4 31 31 H 1.09000 * 113.61925 * 203.66613 * 10 8 7 32 32 H 1.09007 * 113.61546 * 334.56842 * 10 8 7 33 33 H 1.08999 * 109.46757 * 207.46474 * 13 11 10 34 34 H 1.08994 * 109.46718 * 327.46407 * 13 11 10 35 35 H 1.09000 * 109.46928 * 60.00151 * 15 14 13 36 36 H 1.09001 * 109.47215 * 180.02562 * 15 14 13 37 37 H 1.09000 * 109.47150 * 299.99620 * 15 14 13 38 38 H 1.09004 * 113.61203 * 220.01672 * 18 11 10 39 39 H 1.08998 * 113.61675 * 89.11364 * 18 11 10 40 40 H 0.96702 * 113.99551 * 270.02066 * 20 19 4 41 41 H 1.08996 * 109.47117 * 315.00207 * 22 21 19 42 42 H 0.96697 * 114.00527 * 59.99993 * 23 22 21 43 43 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 44 44 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 45 45 H 1.08008 * 119.79965 * 179.70831 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5899 1.1965 -0.0005 5 6 4.3307 2.4724 0.0000 6 8 5.5465 2.4696 0.0000 7 7 3.6594 3.6411 0.0005 8 6 4.3949 4.9081 0.0016 9 1 5.4020 4.8126 0.4074 10 6 4.3382 5.6545 -1.3417 11 6 3.0608 6.3341 -0.8205 12 1 2.1490 5.7813 -1.0461 13 6 2.9617 7.8172 -1.1834 14 16 2.1805 7.9904 -2.8113 15 6 2.1666 9.7910 -3.0306 16 8 3.0403 7.4213 -3.7891 17 8 0.8373 7.5356 -2.7196 18 6 3.5995 6.0816 0.5976 19 6 4.2838 -0.0211 -0.0005 20 8 5.6403 -0.0324 -0.0016 21 6 3.5772 -1.2148 -0.0005 22 6 4.3174 -2.5275 -0.0011 23 8 4.8555 -2.7714 1.3001 24 14 3.1443 -3.9016 -0.4555 25 6 2.1967 -1.2017 -0.0062 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8899 0.5139 29 1 1.6511 2.1293 0.0004 30 1 2.6894 3.6435 0.0008 31 1 5.1687 6.3439 -1.4937 32 1 4.1671 5.0012 -2.1974 33 1 2.3613 8.3349 -0.4354 34 1 3.9608 8.2518 -1.2118 35 1 3.1890 10.1680 -3.0046 36 1 1.7128 10.0366 -3.9907 37 1 1.5894 10.2503 -2.2282 38 1 2.8321 5.7731 1.3076 39 1 4.2281 6.8878 0.9759 40 1 6.0328 -0.0357 -0.8853 41 1 5.1285 -2.4869 -0.7280 42 1 4.1887 -2.8201 1.9988 43 1 2.5535 -3.6435 -1.7933 44 1 3.8619 -5.2017 -0.4590 45 1 1.6510 -2.1338 -0.0109 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:57 Heat of formation + Delta-G solvation = -119.195865 kcal Electronic energy + Delta-G solvation = -29756.044792 eV Core-core repulsion = 25448.025552 eV Total energy + Delta-G solvation = -4308.019240 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.60 seconds Orbital eigenvalues (eV) -41.85669 -40.87715 -39.20219 -38.01320 -37.99353 -37.54017 -37.04828 -34.80022 -33.10553 -32.84996 -31.15549 -30.37609 -27.66661 -26.91900 -26.80979 -25.60065 -23.92379 -22.06713 -21.66181 -20.48888 -19.95302 -19.53724 -18.47829 -17.95049 -17.78052 -17.43935 -17.26091 -17.10802 -16.78173 -16.62874 -16.09413 -15.98591 -15.76952 -15.44062 -15.25421 -14.94823 -14.80673 -14.61410 -14.40834 -14.32324 -14.21464 -14.15473 -13.74997 -13.67027 -13.40711 -13.17523 -13.09754 -13.05045 -13.01057 -12.67338 -12.56117 -12.30352 -12.15056 -12.04555 -12.02289 -11.68716 -11.50887 -11.20875 -10.84563 -10.36854 -10.22120 -10.04782 -9.54211 -5.09771 -1.12524 -0.35786 0.03739 1.22604 1.59353 1.64260 1.75190 1.91868 2.01332 2.52312 2.56343 2.86287 3.16222 3.18368 3.22136 3.36109 3.41126 3.48639 3.56233 3.60766 3.67901 3.69638 3.74999 3.88961 4.02481 4.05875 4.10297 4.23254 4.26828 4.40214 4.52266 4.54014 4.55405 4.55779 4.56906 4.66936 4.72237 4.79445 4.88888 4.92114 4.95674 4.96655 5.15366 5.28690 5.48220 5.55705 6.41604 6.60819 6.75345 7.20799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.096 4.096 3 C -0.068 4.068 4 C -0.165 4.165 5 C 0.563 3.437 6 O -0.513 6.513 7 N -0.714 5.714 8 C 0.121 3.879 9 H 0.110 0.890 10 C -0.151 4.151 11 C -0.107 4.107 12 H 0.104 0.896 13 C -0.602 4.602 14 S 2.417 3.583 15 C -0.659 4.659 16 O -0.934 6.934 17 O -0.940 6.940 18 C -0.130 4.130 19 C 0.191 3.809 20 O -0.467 6.467 21 C -0.154 4.154 22 C -0.058 4.058 23 O -0.530 6.530 24 Si 0.683 3.317 25 C -0.072 4.072 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.131 0.869 30 H 0.400 0.600 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.129 0.871 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.080 0.920 39 H 0.103 0.897 40 H 0.394 0.606 41 H 0.112 0.888 42 H 0.377 0.623 43 H -0.255 1.255 44 H -0.251 1.251 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.834 3.700 2.425 7.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.097 4.097 3 C -0.086 4.086 4 C -0.168 4.168 5 C 0.350 3.650 6 O -0.389 6.389 7 N -0.366 5.366 8 C 0.015 3.985 9 H 0.128 0.872 10 C -0.190 4.190 11 C -0.126 4.126 12 H 0.122 0.878 13 C -0.730 4.730 14 S 2.600 3.400 15 C -0.808 4.808 16 O -0.931 6.931 17 O -0.937 6.937 18 C -0.169 4.169 19 C 0.144 3.856 20 O -0.278 6.278 21 C -0.155 4.155 22 C -0.169 4.169 23 O -0.335 6.335 24 Si 0.584 3.416 25 C -0.090 4.090 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.149 0.851 30 H 0.235 0.765 31 H 0.119 0.881 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.099 0.901 39 H 0.121 0.879 40 H 0.252 0.748 41 H 0.129 0.871 42 H 0.224 0.776 43 H -0.180 1.180 44 H -0.176 1.176 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -4.919 2.418 1.533 5.692 hybrid contribution 0.234 1.429 -0.182 1.460 sum -4.685 3.848 1.351 6.212 Atomic orbital electron populations 1.20849 0.89877 1.03628 1.03068 1.19805 0.96858 0.92215 1.00774 1.21133 0.92105 0.98366 0.97035 1.20359 0.93951 0.93371 1.09164 1.18023 0.87316 0.83232 0.76385 1.90841 1.12963 1.87175 1.47887 1.45591 1.10018 1.04928 1.76100 1.21806 0.97525 0.82303 0.96855 0.87157 1.23651 0.97133 0.99772 0.98417 1.22370 0.99885 0.91251 0.99097 0.87820 1.30312 1.14625 1.04850 1.23242 1.07953 0.75971 0.78264 0.77858 1.30297 1.11657 1.26650 1.12176 1.93624 1.68026 1.74958 1.56474 1.93614 1.34637 1.78907 1.86542 1.23351 1.00119 0.98051 0.95381 1.18221 0.83952 0.89685 0.93779 1.84805 1.14109 1.95869 1.32976 1.20739 0.94076 0.95903 1.04763 1.24942 1.03776 0.98600 0.89598 1.86583 1.36941 1.94137 1.15850 0.94993 0.83467 0.77735 0.85440 1.20986 0.92558 0.97962 0.97495 0.90583 0.90756 0.90995 0.85106 0.76474 0.88103 0.89873 0.84546 0.84594 0.85275 0.85124 0.85325 0.90107 0.87903 0.74807 0.87101 0.77649 1.17953 1.17611 0.84576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.43 10.00 36.01 0.36 0.79 16 2 C -0.10 0.15 5.87 -104.67 -0.61 -0.47 16 3 C -0.07 0.06 9.18 -39.20 -0.36 -0.30 16 4 C -0.16 -0.29 5.89 -104.85 -0.62 -0.90 16 5 C 0.56 1.67 7.76 -12.47 -0.10 1.57 16 6 O -0.51 -3.38 14.76 -16.59 -0.24 -3.62 16 7 N -0.71 0.15 5.21 -54.06 -0.28 -0.13 16 8 C 0.12 -0.08 4.32 -67.12 -0.29 -0.37 16 9 H 0.11 0.11 7.46 -51.93 -0.39 -0.28 16 10 C -0.15 0.15 7.43 -25.92 -0.19 -0.04 16 11 C -0.11 0.29 3.53 -89.80 -0.32 -0.03 16 12 H 0.10 -0.29 8.13 -51.93 -0.42 -0.71 16 13 C -0.60 2.82 5.65 37.16 0.21 3.03 16 14 S 2.42 -5.00 5.35 -107.50 -0.57 -5.58 16 15 C -0.66 3.10 10.62 101.05 1.07 4.17 16 16 O -0.93 -1.95 18.10 -57.83 -1.05 -3.00 16 17 O -0.94 -1.80 18.10 -57.83 -1.05 -2.84 16 18 C -0.13 0.41 7.39 -25.91 -0.19 0.22 16 19 C 0.19 0.49 6.69 -38.69 -0.26 0.23 16 20 O -0.47 -1.84 10.91 -40.54 -0.44 -2.28 16 21 C -0.15 -0.09 5.27 -104.51 -0.55 -0.65 16 22 C -0.06 -0.03 2.38 36.01 0.09 0.06 16 23 O -0.53 -0.87 12.88 -35.23 -0.45 -1.32 16 24 Si 0.68 -0.79 29.90 -169.99 -5.08 -5.87 16 25 C -0.07 0.09 8.30 -39.53 -0.33 -0.24 16 26 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 27 H 0.07 -0.34 8.09 -51.93 -0.42 -0.76 16 28 H 0.07 -0.31 8.08 -51.93 -0.42 -0.73 16 29 H 0.13 -0.47 6.41 -52.48 -0.34 -0.81 16 30 H 0.40 -1.10 6.73 -40.82 -0.27 -1.38 16 31 H 0.10 -0.20 7.90 -51.93 -0.41 -0.61 16 32 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 33 H 0.14 -0.94 8.14 -51.92 -0.42 -1.37 16 34 H 0.14 -0.90 7.85 -51.93 -0.41 -1.31 16 35 H 0.13 -0.81 8.14 -51.92 -0.42 -1.24 16 36 H 0.13 -0.57 8.14 -51.92 -0.42 -0.99 16 37 H 0.13 -0.82 8.14 -51.92 -0.42 -1.25 16 38 H 0.08 -0.30 8.14 -51.93 -0.42 -0.72 16 39 H 0.10 -0.43 8.10 -51.93 -0.42 -0.85 16 40 H 0.39 0.22 9.06 45.56 0.41 0.64 16 41 H 0.11 0.10 7.83 -51.93 -0.41 -0.30 16 42 H 0.38 -0.93 8.70 45.56 0.40 -0.53 16 43 H -0.25 -0.26 7.11 56.52 0.40 0.14 16 44 H -0.25 -0.57 7.11 56.52 0.40 -0.16 16 45 H 0.14 -0.52 5.09 -52.48 -0.27 -0.78 16 LS Contribution 386.12 15.07 5.82 5.82 Total: 0.00 -15.86 386.12 -10.96 -26.83 By element: Atomic # 1 Polarization: -9.57 SS G_CDS: -5.52 Total: -15.09 kcal Atomic # 6 Polarization: 9.18 SS G_CDS: -2.09 Total: 7.09 kcal Atomic # 7 Polarization: 0.15 SS G_CDS: -0.28 Total: -0.13 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -3.23 Total: -13.07 kcal Atomic # 14 Polarization: -0.79 SS G_CDS: -5.08 Total: -5.87 kcal Atomic # 16 Polarization: -5.00 SS G_CDS: -0.57 Total: -5.58 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -15.86 -10.96 -26.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.369 kcal (2) G-P(sol) polarization free energy of solvation -15.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.60 seconds