Wall clock time and date at job start Tue Mar 9 2021 12:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37782 * 119.85381 * 2 1 4 4 C 1.39701 * 119.91509 * 180.02562 * 3 2 1 5 5 C 1.47536 * 120.19788 * 180.02562 * 4 3 2 6 6 O 1.21582 * 120.00213 * 179.97438 * 5 4 3 7 7 N 1.34776 * 119.99414 * 359.97116 * 5 4 3 8 8 C 1.46500 * 119.99641 * 179.97438 * 7 5 4 9 9 H 1.08998 * 112.85287 * 336.19643 * 8 7 5 10 10 C 1.53778 * 113.61389 * 107.50691 * 8 7 5 11 11 C 1.53785 * 87.08121 * 89.11394 * 10 8 7 12 12 H 1.08993 * 113.61488 * 270.88389 * 11 10 8 13 13 C 1.53011 * 113.68809 * 139.99222 * 11 10 8 14 14 S 1.81393 * 109.46923 * 87.46640 * 13 11 10 15 15 C 1.81399 * 101.91972 * 179.97438 * 14 13 11 16 16 O 1.42097 * 108.58271 * 294.48468 * 14 13 11 17 17 O 1.42104 * 108.57875 * 65.51079 * 14 13 11 18 18 C 1.53783 * 87.08018 * 25.43541 * 11 10 8 19 19 C 1.40141 * 119.61499 * 359.97438 * 4 3 2 20 20 O 1.35654 * 120.15202 * 179.97438 * 19 4 3 21 21 C 1.38711 * 119.70143 * 0.02562 * 19 4 3 22 22 C 1.50699 * 119.96142 * 179.97438 * 21 19 4 23 23 O 1.42907 * 109.46603 * 75.00294 * 22 21 19 24 24 Si 1.86298 * 109.47032 * 194.99597 * 22 21 19 25 25 C 1.38061 * 120.07747 * 0.27120 * 21 19 4 26 26 H 1.08993 * 109.47244 * 89.99991 * 1 2 3 27 27 H 1.09000 * 109.46758 * 210.00083 * 1 2 3 28 28 H 1.08994 * 109.46673 * 329.99624 * 1 2 3 29 29 H 1.08007 * 120.03923 * 0.02562 * 3 2 1 30 30 H 0.97001 * 120.00740 * 0.02562 * 7 5 4 31 31 H 1.09000 * 113.61925 * 203.66613 * 10 8 7 32 32 H 1.09007 * 113.61546 * 334.56842 * 10 8 7 33 33 H 1.08999 * 109.46757 * 207.46474 * 13 11 10 34 34 H 1.08994 * 109.46718 * 327.46407 * 13 11 10 35 35 H 1.09000 * 109.46928 * 60.00151 * 15 14 13 36 36 H 1.09001 * 109.47215 * 180.02562 * 15 14 13 37 37 H 1.09000 * 109.47150 * 299.99620 * 15 14 13 38 38 H 1.09004 * 113.61203 * 220.01672 * 18 11 10 39 39 H 1.08998 * 113.61675 * 89.11364 * 18 11 10 40 40 H 0.96702 * 113.99551 * 270.02066 * 20 19 4 41 41 H 1.08996 * 109.47117 * 315.00207 * 22 21 19 42 42 H 0.96697 * 114.00527 * 59.99993 * 23 22 21 43 43 H 1.48506 * 109.99834 * 58.68765 * 24 22 21 44 44 H 1.48502 * 110.00011 * 180.02562 * 24 22 21 45 45 H 1.08008 * 119.79965 * 179.70831 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1929 1.1950 0.0000 4 6 3.5899 1.1965 -0.0005 5 6 4.3307 2.4724 0.0000 6 8 5.5465 2.4696 0.0000 7 7 3.6594 3.6411 0.0005 8 6 4.3949 4.9081 0.0016 9 1 5.4020 4.8126 0.4074 10 6 4.3382 5.6545 -1.3417 11 6 3.0608 6.3341 -0.8205 12 1 2.1490 5.7813 -1.0461 13 6 2.9617 7.8172 -1.1834 14 16 2.1805 7.9904 -2.8113 15 6 2.1666 9.7910 -3.0306 16 8 3.0403 7.4213 -3.7891 17 8 0.8373 7.5356 -2.7196 18 6 3.5995 6.0816 0.5976 19 6 4.2838 -0.0211 -0.0005 20 8 5.6403 -0.0324 -0.0016 21 6 3.5772 -1.2148 -0.0005 22 6 4.3174 -2.5275 -0.0011 23 8 4.8555 -2.7714 1.3001 24 14 3.1443 -3.9016 -0.4555 25 6 2.1967 -1.2017 -0.0062 26 1 -0.3633 0.0000 -1.0276 27 1 -0.3633 -0.8900 0.5139 28 1 -0.3632 0.8899 0.5139 29 1 1.6511 2.1293 0.0004 30 1 2.6894 3.6435 0.0008 31 1 5.1687 6.3439 -1.4937 32 1 4.1671 5.0012 -2.1974 33 1 2.3613 8.3349 -0.4354 34 1 3.9608 8.2518 -1.2118 35 1 3.1890 10.1680 -3.0046 36 1 1.7128 10.0366 -3.9907 37 1 1.5894 10.2503 -2.2282 38 1 2.8321 5.7731 1.3076 39 1 4.2281 6.8878 0.9759 40 1 6.0328 -0.0357 -0.8853 41 1 5.1285 -2.4869 -0.7280 42 1 4.1887 -2.8201 1.9988 43 1 2.5535 -3.6435 -1.7933 44 1 3.8619 -5.2017 -0.4590 45 1 1.6510 -2.1338 -0.0109 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_13422088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:52:56 Heat of formation + Delta-G solvation = -129.844065 kcal Electronic energy + Delta-G solvation = -29756.506533 eV Core-core repulsion = 25448.025552 eV Total energy + Delta-G solvation = -4308.480981 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90941 -40.82970 -39.28736 -38.07138 -37.96300 -37.63188 -36.99636 -34.89465 -33.05883 -32.80157 -30.91324 -30.08147 -27.52176 -26.81635 -26.76194 -25.61067 -23.83121 -22.04269 -21.71641 -20.43220 -19.80375 -19.62327 -18.52611 -17.95225 -17.64365 -17.45716 -17.13193 -16.96264 -16.83986 -16.59362 -16.11164 -16.06858 -15.74041 -15.44087 -15.18700 -14.97611 -14.78314 -14.40669 -14.20779 -14.11504 -13.99770 -13.91110 -13.66630 -13.50713 -13.32484 -13.13114 -13.00751 -12.92369 -12.84169 -12.57400 -12.39382 -12.21891 -12.19851 -12.10409 -11.86929 -11.75710 -11.35212 -11.06758 -10.98689 -10.42113 -10.29795 -10.04299 -9.52651 -5.05126 -0.89790 -0.38318 0.04565 1.24488 1.62294 1.66128 1.90965 1.92344 1.99780 2.51914 2.75791 3.12047 3.13181 3.35139 3.39254 3.43279 3.49551 3.62303 3.63325 3.75887 3.79904 4.07748 4.09623 4.10110 4.16004 4.20703 4.31588 4.39142 4.46559 4.52137 4.59900 4.73055 4.78846 4.79526 4.82706 4.91767 4.95728 4.95867 4.98826 4.99332 5.11442 5.16242 5.26559 5.41421 5.51487 5.66971 6.38476 6.65552 6.75010 7.09091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.093 4.093 3 C -0.065 4.065 4 C -0.183 4.183 5 C 0.557 3.443 6 O -0.562 6.562 7 N -0.700 5.700 8 C 0.106 3.894 9 H 0.088 0.912 10 C -0.158 4.158 11 C -0.110 4.110 12 H 0.102 0.898 13 C -0.584 4.584 14 S 2.410 3.590 15 C -0.646 4.646 16 O -0.989 6.989 17 O -0.990 6.990 18 C -0.112 4.112 19 C 0.160 3.840 20 O -0.491 6.491 21 C -0.159 4.159 22 C -0.076 4.076 23 O -0.554 6.554 24 Si 0.792 3.208 25 C -0.069 4.069 26 H 0.081 0.919 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.413 0.587 31 H 0.109 0.891 32 H 0.058 0.942 33 H 0.171 0.829 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.093 0.907 39 H 0.121 0.879 40 H 0.398 0.602 41 H 0.096 0.904 42 H 0.393 0.607 43 H -0.278 1.278 44 H -0.300 1.300 45 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.235 5.279 3.726 10.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.093 4.093 3 C -0.083 4.083 4 C -0.186 4.186 5 C 0.345 3.655 6 O -0.442 6.442 7 N -0.352 5.352 8 C 0.001 3.999 9 H 0.106 0.894 10 C -0.197 4.197 11 C -0.129 4.129 12 H 0.120 0.880 13 C -0.715 4.715 14 S 2.599 3.401 15 C -0.798 4.798 16 O -0.986 6.986 17 O -0.987 6.987 18 C -0.151 4.151 19 C 0.113 3.887 20 O -0.303 6.303 21 C -0.160 4.160 22 C -0.184 4.184 23 O -0.362 6.362 24 Si 0.696 3.304 25 C -0.086 4.086 26 H 0.100 0.900 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.174 0.826 30 H 0.251 0.749 31 H 0.128 0.872 32 H 0.077 0.923 33 H 0.189 0.811 34 H 0.181 0.819 35 H 0.169 0.831 36 H 0.145 0.855 37 H 0.172 0.828 38 H 0.111 0.889 39 H 0.140 0.860 40 H 0.257 0.743 41 H 0.113 0.887 42 H 0.242 0.758 43 H -0.204 1.204 44 H -0.228 1.228 45 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.379 4.022 2.827 8.867 hybrid contribution 1.027 0.987 -0.579 1.538 sum -6.351 5.009 2.248 8.396 Atomic orbital electron populations 1.20947 0.87723 1.05002 1.03810 1.20160 0.98292 0.91653 0.99177 1.21439 0.90935 1.00043 0.95890 1.20412 0.95138 0.92481 1.10614 1.18359 0.86951 0.84416 0.75766 1.90802 1.14961 1.87890 1.50520 1.45510 1.10662 1.04423 1.74630 1.21949 0.97246 0.82916 0.97796 0.89350 1.23710 0.98854 0.99932 0.97201 1.22387 0.98774 0.92569 0.99162 0.87978 1.30177 1.16376 1.03910 1.21074 1.07745 0.74542 0.79436 0.78415 1.30154 1.13668 1.22888 1.13054 1.93558 1.68669 1.77127 1.59266 1.93547 1.36966 1.80748 1.87446 1.23325 0.99881 0.96784 0.95085 1.18590 0.83499 0.90965 0.95625 1.84762 1.15559 1.96090 1.33847 1.20789 0.94936 0.95102 1.05194 1.25292 1.04159 0.99955 0.89005 1.86533 1.38604 1.94222 1.16845 0.93810 0.80844 0.72955 0.82764 1.21323 0.91722 0.99488 0.96109 0.89998 0.89216 0.89931 0.82560 0.74926 0.87230 0.92348 0.81086 0.81921 0.83051 0.85486 0.82817 0.88861 0.86029 0.74281 0.88679 0.75774 1.20431 1.22776 0.81744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.16 10.00 71.24 0.71 1.87 16 2 C -0.09 0.39 5.87 -19.90 -0.12 0.28 16 3 C -0.06 0.13 9.18 22.52 0.21 0.34 16 4 C -0.18 -0.97 5.89 -20.01 -0.12 -1.09 16 5 C 0.56 4.75 7.76 86.70 0.67 5.42 16 6 O -0.56 -9.59 14.76 16.94 0.25 -9.34 16 7 N -0.70 -0.65 5.21 -443.21 -2.31 -2.96 16 8 C 0.11 -0.01 4.32 45.52 0.20 0.18 16 9 H 0.09 0.39 7.46 -2.39 -0.02 0.37 16 10 C -0.16 0.12 7.43 31.12 0.23 0.35 16 11 C -0.11 0.67 3.53 -10.26 -0.04 0.63 16 12 H 0.10 -0.58 8.13 -2.39 -0.02 -0.60 16 13 C -0.58 6.69 5.65 71.99 0.41 7.10 16 14 S 2.41 -9.72 5.35 -56.49 -0.30 -10.02 16 15 C -0.65 7.25 10.62 113.37 1.20 8.46 16 16 O -0.99 -5.83 18.10 -127.37 -2.31 -8.13 16 17 O -0.99 -4.67 18.10 -127.37 -2.30 -6.98 16 18 C -0.11 0.86 7.39 31.12 0.23 1.09 16 19 C 0.16 1.23 6.69 22.85 0.15 1.38 16 20 O -0.49 -5.80 10.91 -68.78 -0.75 -6.55 16 21 C -0.16 -0.38 5.27 -19.79 -0.10 -0.48 16 22 C -0.08 -0.18 2.38 71.24 0.17 -0.01 16 23 O -0.55 -2.66 12.88 -148.98 -1.92 -4.58 16 24 Si 0.79 -1.88 29.90 68.60 2.05 0.17 16 25 C -0.07 0.23 8.30 22.30 0.19 0.41 16 26 H 0.08 -0.83 8.14 -2.39 -0.02 -0.85 16 27 H 0.09 -1.10 8.09 -2.39 -0.02 -1.12 16 28 H 0.08 -0.94 8.08 -2.39 -0.02 -0.96 16 29 H 0.16 -1.29 6.41 -2.91 -0.02 -1.31 16 30 H 0.41 -2.17 6.73 -92.71 -0.62 -2.79 16 31 H 0.11 -0.34 7.90 -2.39 -0.02 -0.36 16 32 H 0.06 0.24 8.14 -2.38 -0.02 0.22 16 33 H 0.17 -3.05 8.14 -2.39 -0.02 -3.07 16 34 H 0.16 -2.65 7.85 -2.39 -0.02 -2.67 16 35 H 0.15 -2.32 8.14 -2.39 -0.02 -2.34 16 36 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 37 H 0.15 -2.45 8.14 -2.39 -0.02 -2.47 16 38 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 39 H 0.12 -1.34 8.10 -2.39 -0.02 -1.36 16 40 H 0.40 2.37 9.06 -74.06 -0.67 1.69 16 41 H 0.10 0.45 7.83 -2.39 -0.02 0.43 16 42 H 0.39 -1.66 8.70 -74.06 -0.64 -2.30 16 43 H -0.28 -0.40 7.11 99.48 0.71 0.31 16 44 H -0.30 -1.69 7.11 99.48 0.71 -0.98 16 45 H 0.17 -1.60 5.09 -2.91 -0.01 -1.62 16 Total: 0.00 -41.96 386.12 -4.44 -46.40 By element: Atomic # 1 Polarization: -23.10 SS G_CDS: -0.85 Total: -23.95 kcal Atomic # 6 Polarization: 21.95 SS G_CDS: 3.99 Total: 25.94 kcal Atomic # 7 Polarization: -0.65 SS G_CDS: -2.31 Total: -2.96 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -7.03 Total: -35.57 kcal Atomic # 14 Polarization: -1.88 SS G_CDS: 2.05 Total: 0.17 kcal Atomic # 16 Polarization: -9.72 SS G_CDS: -0.30 Total: -10.02 kcal Total: -41.96 -4.44 -46.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_13422088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.442 kcal (2) G-P(sol) polarization free energy of solvation -41.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds