Wall clock time and date at job start Tue Mar 9 2021 12:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42100 * 108.57851 * 2 1 4 4 O 1.42105 * 108.57522 * 228.97881 * 2 1 3 5 5 C 1.81394 * 101.92223 * 114.48941 * 2 1 3 6 6 C 1.53003 * 109.47075 * 180.02562 * 5 2 1 7 7 H 1.08996 * 112.85140 * 43.79984 * 6 5 2 8 8 C 1.53781 * 113.61480 * 175.00018 * 6 5 2 9 9 C 1.53786 * 87.17350 * 139.93948 * 8 6 5 10 10 H 1.09000 * 113.61138 * 220.06261 * 9 8 6 11 11 N 1.46496 * 113.61518 * 89.15486 * 9 8 6 12 12 C 1.34779 * 119.99390 * 154.99856 * 11 9 8 13 13 O 1.21277 * 120.00682 * 0.02562 * 12 11 9 14 14 C 1.50703 * 119.99369 * 180.02562 * 12 11 9 15 15 C 1.53040 * 109.32737 * 180.35135 * 14 12 11 16 16 C 1.53490 * 108.58712 * 189.99736 * 15 14 12 17 17 N 1.47028 * 107.50846 * 61.20682 * 16 15 14 18 18 C 1.38925 * 118.88613 * 316.25963 * 17 16 15 19 19 C 1.31115 * 121.84494 * 13.28553 * 18 17 16 20 20 C 1.50707 * 118.54476 * 179.61612 * 19 18 17 21 21 O 1.42896 * 109.46965 * 250.02263 * 20 19 18 22 22 Si 1.86297 * 109.47035 * 10.02672 * 20 19 18 23 23 C 1.53782 * 113.61259 * 272.49852 * 6 5 2 24 24 H 1.09003 * 109.47334 * 305.50948 * 1 2 3 25 25 H 1.09003 * 109.47443 * 65.51015 * 1 2 3 26 26 H 1.09004 * 109.47039 * 185.50958 * 1 2 3 27 27 H 1.08994 * 109.47190 * 60.00169 * 5 2 1 28 28 H 1.09002 * 109.47468 * 299.99601 * 5 2 1 29 29 H 1.09002 * 113.61445 * 254.52948 * 8 6 5 30 30 H 1.09002 * 113.61408 * 25.34678 * 8 6 5 31 31 H 0.97001 * 120.00117 * 335.00621 * 11 9 8 32 32 H 1.09004 * 109.32751 * 299.99966 * 14 12 11 33 33 H 1.09005 * 109.62079 * 309.88502 * 15 14 12 34 34 H 1.08994 * 109.62502 * 70.44662 * 15 14 12 35 35 H 1.09007 * 109.96475 * 301.68269 * 16 15 14 36 36 H 1.09001 * 109.88267 * 180.69623 * 16 15 14 37 37 H 0.97001 * 120.55850 * 136.27514 * 17 16 15 38 38 H 1.07995 * 119.07789 * 193.30969 * 18 17 16 39 39 H 1.08998 * 109.46739 * 130.02518 * 20 19 18 40 40 H 0.96708 * 113.99595 * 179.97438 * 21 20 19 41 41 H 1.48500 * 109.99770 * 178.67939 * 22 20 19 42 42 H 1.48507 * 109.99817 * 299.99788 * 22 20 19 43 43 H 1.08997 * 113.61668 * 334.56352 * 23 6 5 44 44 H 1.08994 * 113.61387 * 105.47087 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7357 1.6151 6 6 3.7055 -0.8184 1.7983 7 1 4.2200 0.0893 1.4833 8 6 4.1317 -1.3170 3.1892 9 6 5.2293 -2.1267 2.4788 10 1 5.3770 -3.1225 2.8969 11 7 6.4831 -1.3893 2.3050 12 6 7.6468 -2.0582 2.1827 13 8 7.6559 -3.2705 2.2159 14 6 8.9367 -1.2996 2.0045 15 6 10.0954 -2.2920 1.8830 16 6 11.4161 -1.5134 1.9551 17 7 11.4654 -0.8464 3.2644 18 6 10.3247 -0.2093 3.7365 19 6 9.1497 -0.3965 3.1856 20 6 7.9600 0.3260 3.7635 21 8 7.1008 -0.6139 4.4117 22 14 8.5427 1.5910 5.0009 23 6 4.3248 -2.1075 1.2330 24 1 -0.3634 0.5969 0.8365 25 1 -0.3634 0.4260 -0.9352 26 1 -0.3633 -1.0230 0.0987 27 1 1.7611 -1.7369 1.6663 28 1 1.7611 -0.1171 2.4042 29 1 4.5193 -0.5294 3.8355 30 1 3.3809 -1.9361 3.6801 31 1 6.4758 -0.4197 2.2781 32 1 8.8795 -0.6989 1.0967 33 1 10.0475 -3.0124 2.6997 34 1 10.0325 -2.8130 0.9277 35 1 11.4532 -0.7690 1.1596 36 1 12.2571 -2.2000 1.8581 37 1 12.2808 -0.8509 3.7898 38 1 10.4081 0.4592 4.5805 39 1 7.4142 0.8253 2.9630 40 1 6.3125 -0.2178 4.8081 41 1 7.3812 2.3322 5.5546 42 1 9.2885 0.9227 6.0975 43 1 3.6274 -2.9440 1.1885 44 1 4.8683 -1.9581 0.3001 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_15608500.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:30 Heat of formation + Delta-G solvation = -72.727231 kcal Electronic energy + Delta-G solvation = -27965.731738 eV Core-core repulsion = 24013.898472 eV Total energy + Delta-G solvation = -3951.833266 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.70928 -40.17637 -38.80916 -37.95325 -37.71959 -36.98444 -34.53955 -33.39273 -32.80075 -30.94354 -30.08857 -27.29952 -26.71923 -25.98599 -23.89688 -23.14787 -21.96033 -20.33668 -19.79434 -19.25514 -18.66318 -18.36800 -18.01226 -17.58012 -17.19706 -16.97850 -16.88807 -16.40777 -15.93588 -15.63355 -15.45150 -15.05737 -14.79481 -14.65576 -14.51162 -14.17897 -14.00604 -13.91455 -13.76239 -13.72715 -13.43018 -13.22734 -13.11018 -13.01887 -12.98702 -12.84813 -12.36521 -12.26980 -12.14759 -11.84390 -11.81311 -11.69972 -11.30149 -11.26621 -10.97411 -10.73348 -10.32585 -9.77106 -8.42927 -4.85559 -0.89062 1.24115 1.40383 1.63235 1.82741 1.92505 2.01054 2.30513 2.66056 2.76809 3.13013 3.42279 3.46711 3.53605 3.66786 3.70601 3.84377 3.89285 4.01413 4.08982 4.10607 4.20559 4.22861 4.25430 4.38016 4.41486 4.50439 4.54990 4.67984 4.76699 4.79696 4.82439 4.83601 4.94094 4.98124 5.02444 5.03857 5.20112 5.23205 5.28316 5.46745 5.72006 6.32789 6.64908 6.71711 6.95281 7.39162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.411 3.589 3 O -0.989 6.989 4 O -0.988 6.988 5 C -0.585 4.585 6 C -0.108 4.108 7 H 0.101 0.899 8 C -0.111 4.111 9 C 0.115 3.885 10 H 0.076 0.924 11 N -0.681 5.681 12 C 0.533 3.467 13 O -0.598 6.598 14 C -0.042 4.042 15 C -0.119 4.119 16 C 0.123 3.877 17 N -0.746 5.746 18 C 0.156 3.844 19 C -0.255 4.255 20 C -0.066 4.066 21 O -0.547 6.547 22 Si 0.750 3.250 23 C -0.161 4.161 24 H 0.153 0.847 25 H 0.127 0.873 26 H 0.151 0.849 27 H 0.161 0.839 28 H 0.170 0.830 29 H 0.093 0.907 30 H 0.115 0.885 31 H 0.408 0.592 32 H 0.113 0.887 33 H 0.047 0.953 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.097 0.903 37 H 0.413 0.587 38 H 0.144 0.856 39 H 0.086 0.914 40 H 0.379 0.621 41 H -0.292 1.292 42 H -0.304 1.304 43 H 0.104 0.896 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.867 5.252 2.726 6.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.599 3.401 3 O -0.986 6.986 4 O -0.985 6.985 5 C -0.716 4.716 6 C -0.128 4.128 7 H 0.119 0.881 8 C -0.150 4.150 9 C 0.009 3.991 10 H 0.094 0.906 11 N -0.333 5.333 12 C 0.321 3.679 13 O -0.479 6.479 14 C -0.063 4.063 15 C -0.158 4.158 16 C -0.001 4.001 17 N -0.377 5.377 18 C 0.033 3.967 19 C -0.265 4.265 20 C -0.176 4.176 21 O -0.356 6.356 22 Si 0.657 3.343 23 C -0.200 4.200 24 H 0.171 0.829 25 H 0.146 0.854 26 H 0.169 0.831 27 H 0.179 0.821 28 H 0.188 0.812 29 H 0.111 0.889 30 H 0.133 0.867 31 H 0.248 0.752 32 H 0.131 0.869 33 H 0.066 0.934 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.115 0.885 37 H 0.249 0.751 38 H 0.161 0.839 39 H 0.104 0.896 40 H 0.229 0.771 41 H -0.219 1.219 42 H -0.233 1.233 43 H 0.122 0.878 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.870 4.549 2.520 5.272 hybrid contribution -1.404 -0.645 0.959 1.819 sum -2.274 3.904 3.479 5.702 Atomic orbital electron populations 1.30158 1.22957 1.13661 1.13008 1.07728 0.79551 0.74416 0.78357 1.93547 1.80841 1.36741 1.87515 1.93559 1.80690 1.67507 1.56784 1.30180 1.03838 1.16079 1.21470 1.22356 0.91998 0.98699 0.99700 0.88077 1.23299 0.96840 0.99959 0.94907 1.21769 0.83659 0.96809 0.96872 0.90585 1.45626 1.05104 1.10292 1.72278 1.20774 0.86152 0.87323 0.73666 1.90645 1.87781 1.16405 1.53068 1.19784 0.91644 0.95821 0.99016 1.21655 0.94677 0.97051 1.02444 1.21700 0.96929 0.96102 0.85375 1.44660 1.12575 1.58888 1.21553 1.20621 0.86863 0.93278 0.95910 1.19603 0.93253 1.09319 1.04346 1.24717 0.92982 0.97540 1.02314 1.86841 1.37706 1.36179 1.74852 0.94389 0.81902 0.79254 0.78732 1.23755 0.99561 0.98554 0.98120 0.82862 0.85438 0.83100 0.82105 0.81201 0.88860 0.86670 0.75230 0.86928 0.93436 0.90576 0.90315 0.88475 0.75114 0.83913 0.89599 0.77098 1.21902 1.23313 0.87769 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 6.79 10.62 113.37 1.20 8.00 16 2 S 2.41 -7.77 5.35 -56.49 -0.30 -8.07 16 3 O -0.99 -5.39 18.10 -127.37 -2.31 -7.69 16 4 O -0.99 -6.58 18.10 -127.37 -2.31 -8.88 16 5 C -0.58 6.05 5.64 71.98 0.41 6.45 16 6 C -0.11 0.52 3.54 -10.27 -0.04 0.49 16 7 H 0.10 -0.45 8.13 -2.39 -0.02 -0.47 16 8 C -0.11 0.72 7.38 31.12 0.23 0.95 16 9 C 0.12 0.20 4.28 45.58 0.20 0.39 16 10 H 0.08 0.58 7.47 -2.39 -0.02 0.56 16 11 N -0.68 -1.68 2.92 -439.74 -1.28 -2.96 16 12 C 0.53 4.83 6.37 87.66 0.56 5.39 16 13 O -0.60 -11.12 15.40 -3.02 -0.05 -11.17 16 14 C -0.04 -0.14 2.75 -12.43 -0.03 -0.17 16 15 C -0.12 -0.47 4.89 30.77 0.15 -0.32 16 16 C 0.12 -0.35 7.16 86.44 0.62 0.27 16 17 N -0.75 2.06 5.83 -345.98 -2.02 0.05 16 18 C 0.16 -0.15 9.62 83.41 0.80 0.65 16 19 C -0.25 -0.15 5.18 -16.76 -0.09 -0.24 16 20 C -0.07 0.19 1.73 71.24 0.12 0.31 16 21 O -0.55 -0.07 9.40 -148.98 -1.40 -1.47 16 22 Si 0.75 -2.74 29.91 68.60 2.05 -0.69 16 23 C -0.16 -0.14 7.44 31.18 0.23 0.09 16 24 H 0.15 -2.33 8.14 -2.39 -0.02 -2.35 16 25 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 26 H 0.15 -2.20 8.14 -2.39 -0.02 -2.22 16 27 H 0.16 -2.41 7.84 -2.39 -0.02 -2.43 16 28 H 0.17 -2.85 8.14 -2.39 -0.02 -2.87 16 29 H 0.09 -0.91 6.85 -2.39 -0.02 -0.92 16 30 H 0.12 -1.08 8.10 -2.39 -0.02 -1.10 16 31 H 0.41 -1.08 5.61 -92.71 -0.52 -1.60 16 32 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 33 H 0.05 0.50 7.76 -2.38 -0.02 0.48 16 34 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.08 -0.40 8.14 -2.38 -0.02 -0.42 16 36 H 0.10 -0.55 8.14 -2.39 -0.02 -0.57 16 37 H 0.41 -2.71 8.96 -92.71 -0.83 -3.54 16 38 H 0.14 -0.52 4.34 -2.91 -0.01 -0.54 16 39 H 0.09 -0.68 6.39 -2.39 -0.02 -0.69 16 40 H 0.38 -2.61 7.49 -74.05 -0.55 -3.17 16 41 H -0.29 -0.28 7.11 99.48 0.71 0.43 16 42 H -0.30 -1.20 6.89 99.48 0.69 -0.52 16 43 H 0.10 -0.12 7.90 -2.39 -0.02 -0.14 16 44 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 Total: 0.00 -37.27 355.71 -4.09 -41.36 By element: Atomic # 1 Polarization: -21.91 SS G_CDS: -0.85 Total: -22.75 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 4.36 Total: 22.28 kcal Atomic # 7 Polarization: 0.39 SS G_CDS: -3.30 Total: -2.91 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -6.06 Total: -29.21 kcal Atomic # 14 Polarization: -2.74 SS G_CDS: 2.05 Total: -0.69 kcal Atomic # 16 Polarization: -7.77 SS G_CDS: -0.30 Total: -8.07 kcal Total: -37.27 -4.09 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_15608500.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.365 kcal (2) G-P(sol) polarization free energy of solvation -37.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds