Wall clock time and date at job start Tue Mar 9 2021 12:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42093 * 108.58077 * 2 1 4 4 O 1.42101 * 108.57559 * 228.96933 * 2 1 3 5 5 C 1.81408 * 101.92164 * 114.48414 * 2 1 3 6 6 C 1.52990 * 109.47101 * 179.97438 * 5 2 1 7 7 H 1.09000 * 112.90908 * 43.75343 * 6 5 2 8 8 C 1.53786 * 113.61464 * 174.99971 * 6 5 2 9 9 C 1.53781 * 87.17350 * 140.02626 * 8 6 5 10 10 H 1.08998 * 113.61196 * 219.97759 * 9 8 6 11 11 N 1.46506 * 113.61613 * 89.15811 * 9 8 6 12 12 C 1.34774 * 119.99981 * 154.99882 * 11 9 8 13 13 O 1.21622 * 120.00171 * 0.02562 * 12 11 9 14 14 C 1.47258 * 119.99905 * 180.02562 * 12 11 9 15 15 C 1.36338 * 126.97370 * 179.71016 * 14 12 11 16 16 C 1.50997 * 126.78131 * 0.72168 * 15 14 12 17 17 C 1.53408 * 108.30772 * 163.85055 * 16 15 14 18 18 C 1.53159 * 109.03856 * 48.25179 * 17 16 15 19 19 C 1.53133 * 109.52915 * 290.42791 * 18 17 16 20 20 N 1.35207 * 108.66500 * 179.85879 * 15 14 12 21 21 C 1.36431 * 109.89725 * 0.42024 * 20 15 14 22 22 C 1.50706 * 125.48883 * 179.71239 * 21 20 15 23 23 O 1.42897 * 109.47429 * 330.01194 * 22 21 20 24 24 Si 1.86301 * 109.46631 * 210.01198 * 22 21 20 25 25 C 1.34492 * 109.01321 * 359.74413 * 21 20 15 26 26 C 1.53781 * 87.08070 * 334.52830 * 9 8 6 27 27 H 1.09008 * 109.47049 * 305.51597 * 1 2 3 28 28 H 1.08997 * 109.46995 * 65.51394 * 1 2 3 29 29 H 1.08998 * 109.47474 * 185.51868 * 1 2 3 30 30 H 1.09007 * 109.46646 * 59.99981 * 5 2 1 31 31 H 1.08994 * 109.47025 * 300.00248 * 5 2 1 32 32 H 1.09002 * 113.61357 * 25.43543 * 8 6 5 33 33 H 1.09002 * 113.61608 * 254.61705 * 8 6 5 34 34 H 0.97003 * 119.99276 * 335.00814 * 11 9 8 35 35 H 1.09002 * 109.87027 * 44.03310 * 16 15 14 36 36 H 1.08999 * 109.52771 * 283.46535 * 16 15 14 37 37 H 1.09003 * 109.54172 * 288.38374 * 17 16 15 38 38 H 1.08995 * 109.61000 * 168.16298 * 17 16 15 39 39 H 1.08998 * 109.45934 * 170.40854 * 18 17 16 40 40 H 1.09004 * 109.46203 * 50.44895 * 18 17 16 41 41 H 1.08990 * 109.56250 * 291.14361 * 19 18 17 42 42 H 1.08997 * 109.65241 * 170.86171 * 19 18 17 43 43 H 1.08998 * 109.46508 * 90.01534 * 22 21 20 44 44 H 0.96696 * 114.00005 * 300.00194 * 23 22 21 45 45 H 1.48495 * 110.00043 * 58.68018 * 24 22 21 46 46 H 1.48495 * 109.99769 * 180.02562 * 24 22 21 47 47 H 1.07999 * 126.81779 * 179.97438 * 25 21 20 48 48 H 1.09005 * 113.61471 * 139.98321 * 26 9 8 49 49 H 1.08996 * 113.61178 * 270.79663 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7980 7 1 4.2216 0.0870 1.4820 8 6 4.1317 -1.3180 3.1889 9 6 5.2298 -2.1270 2.4786 10 1 5.3790 -3.1222 2.8975 11 7 6.4833 -1.3889 2.3051 12 6 7.6474 -2.0570 2.1828 13 8 7.6572 -3.2727 2.2160 14 6 8.9075 -1.3150 2.0091 15 6 10.1580 -1.8420 1.8779 16 6 10.5253 -3.3066 1.8667 17 6 11.9445 -3.4432 1.3004 18 6 12.8614 -2.4368 2.0019 19 6 12.4902 -1.0163 1.5667 20 7 11.0420 -0.8288 1.7367 21 6 10.3880 0.3677 1.7826 22 6 11.0355 1.7237 1.6670 23 8 12.3652 1.6625 2.1866 24 14 10.0462 2.9689 2.6373 25 6 9.0726 0.1420 1.9484 26 6 4.3264 -2.1116 1.2341 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 1.7610 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4043 32 1 3.3811 -1.9377 3.6796 33 1 4.5187 -0.5304 3.8354 34 1 6.4754 -0.4192 2.2785 35 1 9.8249 -3.8595 1.2407 36 1 10.4964 -3.6972 2.8839 37 1 11.9309 -3.2395 0.2296 38 1 12.3121 -4.4544 1.4745 39 1 13.8977 -2.6402 1.7321 40 1 12.7427 -2.5286 3.0816 41 1 12.7562 -0.8742 0.5194 42 1 13.0264 -0.2929 2.1808 43 1 11.0681 2.0224 0.6192 44 1 12.4124 1.4022 3.1167 45 1 9.9671 2.5561 4.0616 46 1 10.6739 4.3104 2.5309 47 1 8.2927 0.8853 2.0226 48 1 4.8707 -1.9636 0.3013 49 1 3.6302 -2.9490 1.1897 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_16915396.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:36 Heat of formation + Delta-G solvation = -66.220597 kcal Electronic energy + Delta-G solvation = -32042.870811 eV Core-core repulsion = 27679.329794 eV Total energy + Delta-G solvation = -4363.541017 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 369.149 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -42.75593 -41.02016 -39.09007 -38.12519 -37.92486 -36.95967 -36.92149 -34.45141 -33.43239 -31.32436 -31.11790 -30.42314 -29.29070 -26.77475 -26.61524 -24.75210 -24.68741 -23.40653 -21.77432 -21.23748 -20.30496 -19.86945 -19.52358 -18.92977 -17.79119 -17.50630 -17.18715 -17.04096 -16.85584 -16.66269 -16.49366 -16.20591 -15.80144 -15.62131 -15.42948 -15.19196 -15.15949 -15.03113 -14.59477 -14.45235 -14.40105 -14.29287 -14.23234 -14.03981 -13.80905 -13.52049 -13.24889 -13.05852 -12.98931 -12.91915 -12.81846 -12.46519 -12.37992 -12.18448 -12.14470 -12.05088 -11.93243 -11.84835 -11.78532 -11.36882 -11.08981 -10.90609 -10.64506 -9.92257 -9.51580 -8.97765 -5.00929 -1.03934 0.87331 1.01087 1.43188 1.60744 1.72993 1.74358 1.99153 2.42926 2.61719 2.71398 2.95109 3.06511 3.31550 3.33589 3.44061 3.52282 3.55433 3.65196 3.72700 3.76257 3.76529 3.79022 3.86272 4.00542 4.18798 4.20260 4.25681 4.33634 4.36290 4.39419 4.44067 4.57029 4.61279 4.65688 4.67639 4.68517 4.72955 4.81602 4.84332 4.91486 4.93592 5.05133 5.07441 5.11490 5.17024 5.24072 5.70712 5.78347 6.03622 6.22874 6.24281 6.75229 7.53164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.660 4.660 2 S 2.418 3.582 3 O -0.939 6.939 4 O -0.933 6.933 5 C -0.601 4.601 6 C -0.107 4.107 7 H 0.105 0.895 8 C -0.131 4.131 9 C 0.123 3.877 10 H 0.108 0.892 11 N -0.713 5.713 12 C 0.598 3.402 13 O -0.547 6.547 14 C -0.235 4.235 15 C 0.121 3.879 16 C -0.056 4.056 17 C -0.129 4.129 18 C -0.139 4.139 19 C 0.099 3.901 20 N -0.427 5.427 21 C -0.012 4.012 22 C -0.051 4.051 23 O -0.533 6.533 24 Si 0.711 3.289 25 C -0.162 4.162 26 C -0.152 4.152 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.128 0.872 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.401 0.599 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.088 0.912 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.121 0.879 44 H 0.376 0.624 45 H -0.256 1.256 46 H -0.254 1.254 47 H 0.153 0.847 48 H 0.083 0.917 49 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.454 0.961 2.990 3.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.809 4.809 2 S 2.600 3.400 3 O -0.936 6.936 4 O -0.931 6.931 5 C -0.729 4.729 6 C -0.126 4.126 7 H 0.124 0.876 8 C -0.170 4.170 9 C 0.017 3.983 10 H 0.126 0.874 11 N -0.363 5.363 12 C 0.388 3.612 13 O -0.425 6.425 14 C -0.245 4.245 15 C 0.004 3.996 16 C -0.093 4.093 17 C -0.167 4.167 18 C -0.176 4.176 19 C -0.022 4.022 20 N -0.104 5.104 21 C -0.121 4.121 22 C -0.160 4.160 23 O -0.339 6.339 24 Si 0.610 3.390 25 C -0.186 4.186 26 C -0.190 4.190 27 H 0.146 0.854 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.154 0.846 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.236 0.764 35 H 0.119 0.881 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.121 0.879 43 H 0.139 0.861 44 H 0.224 0.776 45 H -0.181 1.181 46 H -0.179 1.179 47 H 0.170 0.830 48 H 0.102 0.898 49 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -1.349 1.157 2.354 2.949 hybrid contribution 0.095 -0.219 1.080 1.106 sum -1.254 0.938 3.434 3.774 Atomic orbital electron populations 1.30310 1.27076 1.11572 1.11917 1.07943 0.78221 0.75930 0.77884 1.93613 1.79000 1.34477 1.86529 1.93624 1.78768 1.66845 1.53819 1.30303 1.05173 1.14188 1.23281 1.22412 0.90509 1.00040 0.99625 0.87641 1.23342 0.97985 1.00265 0.95405 1.21736 0.82810 0.97261 0.96476 0.87421 1.45424 1.05633 1.10057 1.75224 1.17290 0.82444 0.86491 0.74980 1.90765 1.87100 1.13454 1.51199 1.19791 0.92050 0.92859 1.19788 1.20390 0.87965 0.90761 1.00517 1.20518 0.96783 0.88661 1.03366 1.21728 0.94570 0.99992 1.00402 1.21938 1.00983 0.93040 1.01671 1.22283 0.77524 0.98859 1.03494 1.43862 1.07307 1.04585 1.54611 1.20641 0.92509 0.87328 1.11597 1.24832 0.87890 0.97044 1.06250 1.86588 1.25608 1.90933 1.30802 0.94483 0.87610 0.76709 0.80191 1.21648 0.94341 0.94154 1.08440 1.23693 0.99154 0.96847 0.99352 0.85381 0.85194 0.85345 0.84707 0.84640 0.88188 0.90146 0.76391 0.88074 0.89430 0.91259 0.90183 0.89334 0.90745 0.89888 0.87913 0.86102 0.77570 1.18053 1.17891 0.82952 0.89835 0.88372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.95 10.62 101.05 1.07 4.03 16 2 S 2.42 -4.43 5.35 -107.50 -0.58 -5.00 16 3 O -0.94 -1.97 18.10 -57.83 -1.05 -3.02 16 4 O -0.93 -2.20 18.10 -57.83 -1.05 -3.24 16 5 C -0.60 2.64 5.65 37.15 0.21 2.85 16 6 C -0.11 0.25 3.55 -89.67 -0.32 -0.07 16 7 H 0.11 -0.26 8.13 -51.93 -0.42 -0.68 16 8 C -0.13 0.36 7.38 -25.92 -0.19 0.17 16 9 C 0.12 -0.03 4.32 -67.11 -0.29 -0.32 16 10 H 0.11 0.13 7.46 -51.93 -0.39 -0.25 16 11 N -0.71 -0.33 5.26 -54.14 -0.28 -0.62 16 12 C 0.60 2.11 7.81 -12.60 -0.10 2.01 16 13 O -0.55 -3.56 14.93 5.26 0.08 -3.48 16 14 C -0.24 -0.63 6.28 -103.47 -0.65 -1.28 16 15 C 0.12 0.30 6.57 -81.65 -0.54 -0.24 16 16 C -0.06 -0.08 5.32 -27.53 -0.15 -0.23 16 17 C -0.13 0.09 5.98 -26.44 -0.16 -0.07 16 18 C -0.14 0.23 5.92 -26.58 -0.16 0.07 16 19 C 0.10 -0.08 6.22 -3.69 -0.02 -0.10 16 20 N -0.43 -0.47 3.11 -107.37 -0.33 -0.80 16 21 C -0.01 -0.01 6.15 -81.87 -0.50 -0.51 16 22 C -0.05 0.04 3.00 36.01 0.11 0.15 16 23 O -0.53 0.20 10.28 -35.23 -0.36 -0.17 16 24 Si 0.71 -1.19 31.11 -169.99 -5.29 -6.47 16 25 C -0.16 -0.06 9.09 -37.46 -0.34 -0.40 16 26 C -0.15 0.08 7.44 -25.78 -0.19 -0.11 16 27 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 28 H 0.13 -0.54 8.14 -51.93 -0.42 -0.96 16 29 H 0.13 -0.78 8.14 -51.93 -0.42 -1.20 16 30 H 0.13 -0.85 7.85 -51.92 -0.41 -1.26 16 31 H 0.14 -0.90 8.14 -51.93 -0.42 -1.32 16 32 H 0.10 -0.39 8.10 -51.93 -0.42 -0.81 16 33 H 0.08 -0.26 8.14 -51.93 -0.42 -0.69 16 34 H 0.40 -0.76 7.83 -40.82 -0.32 -1.08 16 35 H 0.10 0.28 7.40 -51.93 -0.38 -0.10 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 37 H 0.07 -0.02 8.12 -51.93 -0.42 -0.44 16 38 H 0.08 -0.12 8.14 -51.93 -0.42 -0.55 16 39 H 0.09 -0.26 8.14 -51.93 -0.42 -0.68 16 40 H 0.07 -0.10 8.11 -51.93 -0.42 -0.52 16 41 H 0.08 -0.06 8.14 -51.93 -0.42 -0.48 16 42 H 0.10 -0.17 5.67 -51.93 -0.29 -0.46 16 43 H 0.12 -0.17 7.96 -51.93 -0.41 -0.58 16 44 H 0.38 -1.01 8.27 45.56 0.38 -0.63 16 45 H -0.26 -0.21 7.11 56.52 0.40 0.19 16 46 H -0.25 -0.36 7.11 56.52 0.40 0.05 16 47 H 0.15 -0.44 6.52 -52.49 -0.34 -0.78 16 48 H 0.08 0.10 8.14 -51.93 -0.42 -0.32 16 49 H 0.10 -0.15 7.91 -51.93 -0.41 -0.56 16 LS Contribution 402.50 15.07 6.07 6.07 Total: 0.00 -13.73 402.50 -12.70 -26.43 By element: Atomic # 1 Polarization: -7.94 SS G_CDS: -7.69 Total: -15.63 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -2.21 Total: 5.94 kcal Atomic # 7 Polarization: -0.80 SS G_CDS: -0.62 Total: -1.42 kcal Atomic # 8 Polarization: -7.53 SS G_CDS: -2.38 Total: -9.91 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -5.29 Total: -6.47 kcal Atomic # 16 Polarization: -4.43 SS G_CDS: -0.58 Total: -5.00 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -13.73 -12.70 -26.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_16915396.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.789 kcal (2) G-P(sol) polarization free energy of solvation -13.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds