Wall clock time and date at job start Tue Mar 9 2021 12:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81405 * 1 3 3 O 1.42101 * 108.57441 * 2 1 4 4 O 1.42099 * 108.57623 * 228.97225 * 2 1 3 5 5 C 1.81400 * 101.92087 * 114.48225 * 2 1 3 6 6 C 1.52999 * 109.46772 * 180.02562 * 5 2 1 7 7 H 1.08994 * 112.91027 * 316.25039 * 6 5 2 8 8 C 1.53777 * 113.61195 * 87.50741 * 6 5 2 9 9 C 1.53785 * 87.08241 * 139.97738 * 8 6 5 10 10 H 1.09002 * 113.61570 * 220.01842 * 9 8 6 11 11 N 1.46500 * 113.68813 * 89.12417 * 9 8 6 12 12 C 1.34781 * 119.99985 * 105.94035 * 11 9 8 13 13 O 1.21280 * 119.99799 * 359.97438 * 12 11 9 14 14 C 1.50701 * 119.99932 * 179.97438 * 12 11 9 15 15 O 1.42895 * 109.46838 * 179.97438 * 14 12 11 16 16 C 1.35902 * 117.00017 * 179.97438 * 15 14 12 17 17 C 1.38729 * 120.05541 * 359.73110 * 16 15 14 18 18 C 1.38146 * 119.94570 * 179.74176 * 17 16 15 19 19 C 1.38264 * 120.05537 * 0.50554 * 18 17 16 20 20 C 1.50694 * 119.94903 * 179.74712 * 19 18 17 21 21 O 1.42897 * 109.47458 * 120.01749 * 20 19 18 22 22 Si 1.86304 * 109.46760 * 0.02562 * 20 19 18 23 23 C 1.38268 * 120.11035 * 359.76728 * 19 18 17 24 24 C 1.38151 * 120.05722 * 359.97438 * 23 19 18 25 25 C 1.53781 * 87.08241 * 334.56547 * 9 8 6 26 26 H 1.08998 * 109.46917 * 305.51436 * 1 2 3 27 27 H 1.08999 * 109.46948 * 65.51541 * 1 2 3 28 28 H 1.09003 * 109.46748 * 185.51471 * 1 2 3 29 29 H 1.09005 * 109.46817 * 60.00559 * 5 2 1 30 30 H 1.08994 * 109.47385 * 300.00056 * 5 2 1 31 31 H 1.08999 * 113.61947 * 25.43164 * 8 6 5 32 32 H 1.08997 * 113.61348 * 254.52379 * 8 6 5 33 33 H 0.96998 * 120.00149 * 285.93056 * 11 9 8 34 34 H 1.08997 * 109.46730 * 299.99650 * 14 12 11 35 35 H 1.08994 * 109.46768 * 60.00057 * 14 12 11 36 36 H 1.08001 * 120.02500 * 359.97438 * 17 16 15 37 37 H 1.07997 * 119.97349 * 180.22969 * 18 17 16 38 38 H 1.09000 * 109.47164 * 240.02403 * 20 19 18 39 39 H 0.96696 * 114.00393 * 300.00484 * 21 20 19 40 40 H 1.48495 * 110.00029 * 58.68070 * 22 20 19 41 41 H 1.48503 * 110.00070 * 180.02562 * 22 20 19 42 42 H 1.08001 * 119.97673 * 179.97438 * 23 19 18 43 43 H 1.07998 * 120.02620 * 179.97438 * 24 23 19 44 44 H 1.09000 * 113.61578 * 139.97748 * 25 9 8 45 45 H 1.08997 * 113.61673 * 270.88717 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1888 -0.7355 1.6153 6 6 3.7055 -0.8182 1.7984 7 1 4.2217 -1.1749 0.9072 8 6 4.3235 0.4548 2.4004 9 6 5.2283 -0.4714 3.2301 10 1 5.3771 -0.1326 4.2554 11 7 6.4823 -0.8242 2.5598 12 6 7.6417 -0.2675 2.9629 13 8 7.6467 0.5259 3.8802 14 6 8.9317 -0.6309 2.2738 15 8 10.0117 0.0849 2.8765 16 6 11.2539 -0.1306 2.3692 17 6 11.4305 -1.0169 1.3167 18 6 12.6936 -1.2302 0.7993 19 6 13.7826 -0.5690 1.3364 20 6 15.1601 -0.8077 0.7739 21 8 15.6958 0.4242 0.2866 22 14 15.0558 -2.0353 -0.6237 23 6 13.6100 0.3107 2.3891 24 6 12.3483 0.5314 2.9067 25 6 4.1318 -1.5402 3.0877 26 1 -0.3633 0.5970 0.8365 27 1 -0.3633 0.4259 -0.9353 28 1 -0.3633 -1.0230 0.0988 29 1 1.7611 -1.7369 1.6665 30 1 1.7611 -0.1169 2.4042 31 1 3.6254 1.0367 3.0021 32 1 4.8668 1.0611 1.6757 33 1 6.4782 -1.4586 1.8261 34 1 9.1063 -1.7024 2.3711 35 1 8.8662 -0.3677 1.2181 36 1 10.5807 -1.5369 0.8998 37 1 12.8310 -1.9173 -0.0224 38 1 15.8087 -1.2019 1.5562 39 1 15.1686 0.8328 -0.4134 40 1 14.1491 -1.5236 -1.6825 41 1 16.4080 -2.2799 -1.1868 42 1 14.4623 0.8257 2.8073 43 1 12.2141 1.2183 3.7292 44 1 4.5203 -2.5444 2.9177 45 1 3.3812 -1.5037 3.8772 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_2989410.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:45 Heat of formation + Delta-G solvation = -117.131186 kcal Electronic energy + Delta-G solvation = -28414.580948 eV Core-core repulsion = 24106.651239 eV Total energy + Delta-G solvation = -4307.929709 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69882 -41.06364 -39.72724 -38.86230 -37.96533 -37.24175 -36.99798 -34.85792 -32.44023 -31.77174 -31.24513 -30.25879 -29.22942 -26.74161 -26.25656 -24.46789 -23.78943 -22.51552 -21.87550 -20.42164 -19.80182 -19.51310 -18.51369 -18.25766 -17.64671 -17.49915 -17.24591 -17.01896 -16.88658 -16.81870 -16.35257 -16.15546 -15.78401 -15.61453 -15.49446 -15.15209 -14.84978 -14.62427 -14.37951 -14.13489 -14.00644 -13.91063 -13.76219 -13.58456 -13.48331 -13.39403 -13.12967 -13.00672 -12.90259 -12.40297 -12.30435 -12.20061 -12.14844 -12.06981 -11.86223 -11.64048 -11.32935 -11.08763 -10.98763 -10.59527 -10.20026 -10.04467 -9.24594 -4.90944 -0.89558 0.26393 0.30139 1.33822 1.37728 1.44067 1.61824 1.91794 1.98601 2.55677 2.64197 2.76052 3.12270 3.37881 3.43225 3.44959 3.48014 3.65231 3.72647 3.76473 3.81643 3.93603 4.01529 4.07223 4.09128 4.11071 4.21363 4.30190 4.40212 4.41884 4.51995 4.55766 4.68766 4.75088 4.81236 4.83431 4.96687 4.97225 4.99453 5.02011 5.13160 5.15112 5.24770 5.48592 5.51022 5.68997 6.23712 6.42001 6.50099 7.07513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.647 4.647 2 S 2.407 3.593 3 O -0.990 6.990 4 O -0.991 6.991 5 C -0.583 4.583 6 C -0.111 4.111 7 H 0.105 0.895 8 C -0.162 4.162 9 C 0.108 3.892 10 H 0.089 0.911 11 N -0.696 5.696 12 C 0.514 3.486 13 O -0.570 6.570 14 C 0.036 3.964 15 O -0.320 6.320 16 C 0.120 3.880 17 C -0.200 4.200 18 C -0.075 4.075 19 C -0.158 4.158 20 C -0.082 4.082 21 O -0.551 6.551 22 Si 0.772 3.228 23 C -0.060 4.060 24 C -0.166 4.166 25 C -0.109 4.109 26 H 0.151 0.849 27 H 0.126 0.874 28 H 0.154 0.846 29 H 0.172 0.828 30 H 0.163 0.837 31 H 0.107 0.893 32 H 0.058 0.942 33 H 0.421 0.579 34 H 0.132 0.868 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.154 0.846 38 H 0.122 0.878 39 H 0.385 0.615 40 H -0.280 1.280 41 H -0.307 1.307 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.097 0.903 45 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.659 -8.967 0.127 11.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.596 3.404 3 O -0.987 6.987 4 O -0.988 6.988 5 C -0.715 4.715 6 C -0.131 4.131 7 H 0.123 0.877 8 C -0.200 4.200 9 C 0.002 3.998 10 H 0.107 0.893 11 N -0.350 5.350 12 C 0.301 3.699 13 O -0.449 6.449 14 C -0.042 4.042 15 O -0.233 6.233 16 C 0.075 3.925 17 C -0.219 4.219 18 C -0.093 4.093 19 C -0.159 4.159 20 C -0.190 4.190 21 O -0.360 6.360 22 Si 0.677 3.323 23 C -0.078 4.078 24 C -0.185 4.185 25 C -0.148 4.148 26 H 0.170 0.830 27 H 0.144 0.856 28 H 0.172 0.828 29 H 0.190 0.810 30 H 0.181 0.819 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.259 0.741 34 H 0.149 0.851 35 H 0.140 0.860 36 H 0.182 0.818 37 H 0.171 0.829 38 H 0.140 0.860 39 H 0.235 0.765 40 H -0.206 1.206 41 H -0.236 1.236 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.116 0.884 45 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.558 -8.229 -0.152 10.523 hybrid contribution -0.480 1.155 -0.210 1.268 sum -7.037 -7.074 -0.361 9.985 Atomic orbital electron populations 1.30160 1.22973 1.13794 1.12918 1.07805 0.79589 0.74477 0.78496 1.93560 1.80698 1.36900 1.87537 1.93547 1.80849 1.67582 1.56821 1.30171 1.03984 1.16307 1.21024 1.22424 0.92044 0.98219 1.00363 0.87723 1.23731 0.99538 0.96738 1.00038 1.21936 0.82927 0.97970 0.96935 0.89325 1.45404 1.05212 1.46537 1.37848 1.20576 0.85879 0.80341 0.83118 1.90763 1.87343 1.35565 1.31180 1.22752 0.83192 0.99560 0.98702 1.86126 1.13842 1.65218 1.58111 1.19226 0.83957 0.95581 0.93736 1.21500 0.99877 1.01912 0.98589 1.21066 0.91395 0.97860 0.98948 1.20296 0.96042 1.00653 0.98901 1.25242 0.93418 0.92997 1.07385 1.86565 1.53966 1.37306 1.58129 0.94149 0.77579 0.84561 0.75991 1.20911 0.96041 0.96183 0.94665 1.20624 0.91120 1.03430 1.03312 1.23308 0.96573 0.98202 0.96741 0.83033 0.85550 0.82794 0.81041 0.81938 0.87429 0.92287 0.74109 0.85056 0.85960 0.81827 0.82937 0.85998 0.76542 1.20617 1.23568 0.84823 0.85579 0.88442 0.86160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.49 10.62 113.37 1.20 8.70 16 2 S 2.41 -10.99 5.35 -56.49 -0.30 -11.29 16 3 O -0.99 -5.39 18.10 -127.37 -2.30 -7.70 16 4 O -0.99 -4.24 18.10 -127.37 -2.31 -6.55 16 5 C -0.58 7.32 5.64 71.98 0.41 7.73 16 6 C -0.11 0.88 3.54 -10.26 -0.04 0.85 16 7 H 0.10 -0.82 8.13 -2.39 -0.02 -0.84 16 8 C -0.16 0.42 7.43 31.12 0.23 0.65 16 9 C 0.11 -0.34 4.30 45.52 0.20 -0.15 16 10 H 0.09 0.13 7.50 -2.39 -0.02 0.11 16 11 N -0.70 2.86 5.27 -440.02 -2.32 0.54 16 12 C 0.51 1.58 7.91 87.66 0.69 2.27 16 13 O -0.57 -8.43 16.12 16.01 0.26 -8.17 16 14 C 0.04 -0.10 5.22 71.24 0.37 0.27 16 15 O -0.32 -2.03 9.67 -73.41 -0.71 -2.74 16 16 C 0.12 0.46 6.69 22.51 0.15 0.61 16 17 C -0.20 0.44 9.04 22.37 0.20 0.64 16 18 C -0.08 0.19 8.66 22.25 0.19 0.38 16 19 C -0.16 -0.07 5.39 -19.85 -0.11 -0.18 16 20 C -0.08 0.03 2.82 71.23 0.20 0.23 16 21 O -0.55 -1.84 12.77 -148.98 -1.90 -3.74 16 22 Si 0.77 -2.10 29.78 68.60 2.04 -0.06 16 23 C -0.06 -0.19 9.60 22.26 0.21 0.02 16 24 C -0.17 -0.88 9.99 22.37 0.22 -0.66 16 25 C -0.11 1.13 7.38 31.12 0.23 1.36 16 26 H 0.15 -2.39 8.14 -2.39 -0.02 -2.41 16 27 H 0.13 -1.24 8.14 -2.39 -0.02 -1.26 16 28 H 0.15 -2.52 8.14 -2.39 -0.02 -2.54 16 29 H 0.17 -3.25 8.14 -2.39 -0.02 -3.27 16 30 H 0.16 -2.81 7.84 -2.39 -0.02 -2.83 16 31 H 0.11 -0.47 7.89 -2.39 -0.02 -0.49 16 32 H 0.06 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.42 -4.83 8.71 -92.71 -0.81 -5.63 16 34 H 0.13 -1.34 7.65 -2.39 -0.02 -1.35 16 35 H 0.12 -1.04 7.68 -2.39 -0.02 -1.06 16 36 H 0.16 -1.55 6.30 -2.91 -0.02 -1.57 16 37 H 0.15 -1.15 4.87 -2.91 -0.01 -1.16 16 38 H 0.12 -0.20 7.96 -2.39 -0.02 -0.22 16 39 H 0.39 -0.83 8.70 -74.06 -0.64 -1.47 16 40 H -0.28 -0.13 7.11 99.48 0.71 0.57 16 41 H -0.31 -1.74 7.11 99.48 0.71 -1.03 16 42 H 0.13 0.30 8.06 -2.91 -0.02 0.28 16 43 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 44 H 0.10 -1.25 8.14 -2.39 -0.02 -1.27 16 45 H 0.12 -1.59 8.10 -2.39 -0.02 -1.61 16 Total: 0.00 -41.66 389.90 -3.55 -45.21 By element: Atomic # 1 Polarization: -27.84 SS G_CDS: -0.38 Total: -28.23 kcal Atomic # 6 Polarization: 18.36 SS G_CDS: 4.37 Total: 22.73 kcal Atomic # 7 Polarization: 2.86 SS G_CDS: -2.32 Total: 0.54 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -6.96 Total: -28.90 kcal Atomic # 14 Polarization: -2.10 SS G_CDS: 2.04 Total: -0.06 kcal Atomic # 16 Polarization: -10.99 SS G_CDS: -0.30 Total: -11.29 kcal Total: -41.66 -3.55 -45.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_2989410.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.921 kcal (2) G-P(sol) polarization free energy of solvation -41.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds