Wall clock time and date at job start Tue Mar 9 2021 12:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42093 * 108.58077 * 2 1 4 4 O 1.42101 * 108.57559 * 228.96933 * 2 1 3 5 5 C 1.81408 * 101.92164 * 114.48414 * 2 1 3 6 6 C 1.52990 * 109.47101 * 179.97438 * 5 2 1 7 7 H 1.09000 * 112.90908 * 43.75343 * 6 5 2 8 8 C 1.53786 * 113.61464 * 174.99971 * 6 5 2 9 9 C 1.53781 * 87.17350 * 140.02626 * 8 6 5 10 10 H 1.09000 * 113.61379 * 219.89528 * 9 8 6 11 11 N 1.46505 * 113.61334 * 89.07333 * 9 8 6 12 12 C 1.34776 * 119.99597 * 154.99978 * 11 9 8 13 13 O 1.21275 * 120.00338 * 0.02562 * 12 11 9 14 14 C 1.50705 * 119.99715 * 180.02562 * 12 11 9 15 15 C 1.53003 * 109.47127 * 180.02562 * 14 12 11 16 16 O 1.42900 * 109.47277 * 179.97438 * 15 14 12 17 17 C 1.35896 * 116.99812 * 180.02562 * 16 15 14 18 18 C 1.38714 * 120.05244 * 180.02562 * 17 16 15 19 19 C 1.38164 * 119.94446 * 180.02562 * 18 17 16 20 20 C 1.50698 * 119.97459 * 180.02562 * 19 18 17 21 21 O 1.42903 * 109.47200 * 300.00358 * 20 19 18 22 22 Si 1.86292 * 109.47353 * 179.97438 * 20 19 18 23 23 C 1.38244 * 120.05701 * 359.97438 * 19 18 17 24 24 C 1.38298 * 120.10894 * 359.97438 * 23 19 18 25 25 C 1.38122 * 120.05502 * 359.76552 * 24 23 19 26 26 C 1.53781 * 87.08070 * 334.52830 * 9 8 6 27 27 H 1.09008 * 109.47049 * 305.51597 * 1 2 3 28 28 H 1.08997 * 109.46995 * 65.51394 * 1 2 3 29 29 H 1.08998 * 109.47474 * 185.51868 * 1 2 3 30 30 H 1.09007 * 109.46646 * 59.99981 * 5 2 1 31 31 H 1.08994 * 109.47025 * 300.00248 * 5 2 1 32 32 H 1.09002 * 113.61357 * 25.43543 * 8 6 5 33 33 H 1.09002 * 113.61608 * 254.61705 * 8 6 5 34 34 H 0.96995 * 120.00170 * 335.00476 * 11 9 8 35 35 H 1.09000 * 109.46532 * 299.99611 * 14 12 11 36 36 H 1.08993 * 109.47264 * 60.00029 * 14 12 11 37 37 H 1.09002 * 109.47114 * 300.00023 * 15 14 12 38 38 H 1.09004 * 109.46940 * 59.99381 * 15 14 12 39 39 H 1.08002 * 120.02555 * 0.02562 * 18 17 16 40 40 H 1.09006 * 109.47089 * 59.99780 * 20 19 18 41 41 H 0.96700 * 113.99880 * 299.99897 * 21 20 19 42 42 H 1.48506 * 110.00110 * 180.02562 * 22 20 19 43 43 H 1.48501 * 110.00049 * 301.31956 * 22 20 19 44 44 H 1.07990 * 119.94854 * 180.02562 * 23 19 18 45 45 H 1.07995 * 119.97250 * 180.02562 * 24 23 19 46 46 H 1.07995 * 120.02672 * 180.27070 * 25 24 23 47 47 H 1.09005 * 113.61471 * 139.98321 * 26 9 8 48 48 H 1.09003 * 113.61469 * 270.88099 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7980 7 1 4.2216 0.0870 1.4820 8 6 4.1317 -1.3180 3.1889 9 6 5.2298 -2.1270 2.4786 10 1 5.3800 -3.1217 2.8984 11 7 6.4827 -1.3881 2.3034 12 6 7.6471 -2.0556 2.1809 13 8 7.6577 -3.2679 2.2152 14 6 8.9360 -1.2956 2.0013 15 6 10.0990 -2.2833 1.8877 16 8 11.3210 -1.5627 1.7168 17 6 12.4586 -2.2966 1.5984 18 6 13.6805 -1.6618 1.4305 19 6 14.8357 -2.4102 1.3098 20 6 16.1636 -1.7213 1.1280 21 8 16.1337 -0.9368 -0.0660 22 14 17.5134 -2.9987 0.9989 23 6 14.7745 -3.7905 1.3567 24 6 13.5576 -4.4257 1.5251 25 6 12.4007 -3.6819 1.6516 26 6 4.3264 -2.1116 1.2341 27 1 -0.3633 0.5970 0.8365 28 1 -0.3633 0.4259 -0.9352 29 1 -0.3634 -1.0229 0.0988 30 1 1.7610 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4043 32 1 3.3811 -1.9377 3.6796 33 1 4.5187 -0.5304 3.8354 34 1 6.4742 -0.4186 2.2757 35 1 8.8800 -0.6949 1.0935 36 1 9.0956 -0.6430 2.8596 37 1 10.1551 -2.8844 2.7953 38 1 9.9390 -2.9357 1.0292 39 1 13.7289 -0.5835 1.3942 40 1 16.3571 -1.0739 1.9833 41 1 15.9656 -1.4488 -0.8689 42 1 18.8282 -2.3320 0.8200 43 1 17.5340 -3.8413 2.2216 44 1 15.6785 -4.3737 1.2626 45 1 13.5124 -5.5041 1.5618 46 1 11.4512 -4.1783 1.7874 47 1 4.8707 -1.9636 0.3013 48 1 3.6291 -2.9482 1.1904 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_4549614.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:53 Heat of formation + Delta-G solvation = -125.940615 kcal Electronic energy + Delta-G solvation = -30025.043076 eV Core-core repulsion = 25561.193742 eV Total energy + Delta-G solvation = -4463.849334 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.56266 -41.17742 -39.71016 -39.04662 -37.97604 -37.27316 -37.00801 -34.80348 -33.30991 -32.47031 -31.20015 -30.67976 -30.06481 -27.06884 -26.73972 -25.73184 -23.91778 -23.68016 -22.24967 -21.55272 -20.37953 -19.80950 -19.39345 -18.26421 -17.78962 -17.63090 -17.53129 -17.20150 -17.09880 -17.02569 -16.95199 -16.73642 -16.24755 -16.02143 -15.68153 -15.42153 -15.22685 -14.92294 -14.67032 -14.46599 -14.24091 -14.16558 -14.04766 -13.94629 -13.90419 -13.47270 -13.23304 -13.14204 -13.02267 -12.98236 -12.89004 -12.84262 -12.41408 -12.36921 -12.20168 -11.99950 -11.87146 -11.84299 -11.64043 -11.33133 -11.13623 -10.99914 -10.51038 -10.16215 -9.94139 -9.29259 -4.98077 -0.90735 0.18127 0.37225 1.29860 1.44629 1.64318 1.67043 1.90716 1.96726 2.44255 2.65125 2.75073 3.11004 3.37468 3.44226 3.49037 3.52623 3.63556 3.65306 3.75138 3.82640 3.86708 3.93803 4.07683 4.08011 4.09395 4.20334 4.21800 4.25797 4.36236 4.39417 4.48884 4.51686 4.59677 4.63549 4.72226 4.75322 4.80981 4.83781 4.96181 4.96584 4.98537 5.01330 5.13821 5.24185 5.36232 5.42119 5.53068 5.68618 6.30293 6.39757 6.75116 7.09204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.406 3.594 3 O -0.992 6.992 4 O -0.988 6.988 5 C -0.583 4.583 6 C -0.113 4.113 7 H 0.101 0.899 8 C -0.113 4.113 9 C 0.107 3.893 10 H 0.093 0.907 11 N -0.703 5.703 12 C 0.523 3.477 13 O -0.580 6.580 14 C -0.135 4.135 15 C 0.075 3.925 16 O -0.325 6.325 17 C 0.116 3.884 18 C -0.142 4.142 19 C -0.084 4.084 20 C -0.079 4.079 21 O -0.555 6.555 22 Si 0.786 3.214 23 C -0.157 4.157 24 C -0.075 4.075 25 C -0.211 4.211 26 C -0.159 4.159 27 H 0.153 0.847 28 H 0.126 0.874 29 H 0.152 0.848 30 H 0.164 0.836 31 H 0.170 0.830 32 H 0.120 0.880 33 H 0.092 0.908 34 H 0.417 0.583 35 H 0.124 0.876 36 H 0.128 0.872 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.126 0.874 40 H 0.107 0.893 41 H 0.396 0.604 42 H -0.298 1.298 43 H -0.283 1.283 44 H 0.149 0.851 45 H 0.154 0.846 46 H 0.137 0.863 47 H 0.059 0.941 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.547 -1.393 3.170 7.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.596 3.404 3 O -0.989 6.989 4 O -0.985 6.985 5 C -0.715 4.715 6 C -0.132 4.132 7 H 0.119 0.881 8 C -0.152 4.152 9 C 0.002 3.998 10 H 0.111 0.889 11 N -0.355 5.355 12 C 0.310 3.690 13 O -0.459 6.459 14 C -0.174 4.174 15 C -0.001 4.001 16 O -0.239 6.239 17 C 0.071 3.929 18 C -0.161 4.161 19 C -0.085 4.085 20 C -0.188 4.188 21 O -0.364 6.364 22 Si 0.692 3.308 23 C -0.175 4.175 24 C -0.092 4.092 25 C -0.230 4.230 26 C -0.198 4.198 27 H 0.172 0.828 28 H 0.145 0.855 29 H 0.171 0.829 30 H 0.182 0.818 31 H 0.188 0.812 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.255 0.745 35 H 0.142 0.858 36 H 0.146 0.854 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.144 0.856 40 H 0.124 0.876 41 H 0.246 0.754 42 H -0.226 1.226 43 H -0.210 1.210 44 H 0.166 0.834 45 H 0.171 0.829 46 H 0.154 0.846 47 H 0.078 0.922 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.164 -1.543 3.253 6.295 hybrid contribution -1.042 0.551 0.712 1.377 sum -6.206 -0.992 3.965 7.431 Atomic orbital electron populations 1.30155 1.22850 1.13763 1.13007 1.07823 0.79649 0.74432 0.78536 1.93548 1.80888 1.36909 1.87584 1.93558 1.80700 1.67435 1.56835 1.30166 1.03918 1.16188 1.21194 1.22455 0.92070 0.98893 0.99811 0.88119 1.23312 0.96892 1.00048 0.94926 1.21931 0.83161 0.97237 0.97503 0.88912 1.45602 1.05523 1.11082 1.73255 1.20607 0.85902 0.87588 0.74864 1.90730 1.87741 1.15804 1.51672 1.21453 0.89131 0.99005 1.07843 1.22431 0.81185 0.94253 1.02191 1.85953 1.14044 1.36282 1.87636 1.19154 0.86371 0.90599 0.96770 1.20312 0.89547 1.00627 1.05564 1.20249 0.95151 0.93962 0.99105 1.25317 1.00468 1.02658 0.90363 1.86468 1.94853 1.38302 1.16728 0.93515 0.73369 0.77864 0.86078 1.21181 0.98937 0.93319 1.04019 1.21258 0.91085 1.01322 0.95572 1.21552 1.01002 0.92587 1.07865 1.23764 0.99501 0.98569 0.97977 0.82850 0.85496 0.82932 0.81798 0.81223 0.86163 0.88992 0.74520 0.85813 0.85416 0.91525 0.91645 0.85569 0.87588 0.75442 1.22633 1.21028 0.83398 0.82860 0.84563 0.92187 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.22 10.62 113.37 1.20 8.43 16 2 S 2.41 -9.39 5.35 -56.49 -0.30 -9.70 16 3 O -0.99 -5.28 18.10 -127.37 -2.30 -7.59 16 4 O -0.99 -5.65 18.10 -127.37 -2.31 -7.96 16 5 C -0.58 6.86 5.65 71.98 0.41 7.27 16 6 C -0.11 0.78 3.54 -10.18 -0.04 0.74 16 7 H 0.10 -0.61 8.13 -2.39 -0.02 -0.63 16 8 C -0.11 1.04 7.38 31.12 0.23 1.27 16 9 C 0.11 -0.32 4.32 45.52 0.20 -0.13 16 10 H 0.09 0.06 7.46 -2.39 -0.02 0.05 16 11 N -0.70 2.29 5.26 -440.03 -2.32 -0.03 16 12 C 0.52 0.89 7.83 87.66 0.69 1.58 16 13 O -0.58 -5.96 15.58 -3.01 -0.05 -6.00 16 14 C -0.13 0.34 6.07 29.85 0.18 0.53 16 15 C 0.07 0.18 4.03 71.98 0.29 0.47 16 16 O -0.32 -1.87 10.14 -92.38 -0.94 -2.81 16 17 C 0.12 0.74 6.69 22.51 0.15 0.89 16 18 C -0.14 -0.85 9.55 22.37 0.21 -0.64 16 19 C -0.08 -0.24 5.39 -19.88 -0.11 -0.35 16 20 C -0.08 -0.11 2.82 71.24 0.20 0.09 16 21 O -0.56 -1.23 12.77 -148.98 -1.90 -3.13 16 22 Si 0.79 -1.15 29.79 68.60 2.04 0.90 16 23 C -0.16 -0.06 8.67 22.29 0.19 0.13 16 24 C -0.07 -0.06 10.04 22.26 0.22 0.16 16 25 C -0.21 -0.81 9.04 22.37 0.20 -0.61 16 26 C -0.16 0.40 7.44 31.21 0.23 0.64 16 27 H 0.15 -2.43 8.14 -2.39 -0.02 -2.45 16 28 H 0.13 -1.21 8.14 -2.39 -0.02 -1.23 16 29 H 0.15 -2.38 8.14 -2.39 -0.02 -2.39 16 30 H 0.16 -2.78 7.85 -2.39 -0.02 -2.79 16 31 H 0.17 -3.04 8.14 -2.39 -0.02 -3.06 16 32 H 0.12 -1.49 8.10 -2.39 -0.02 -1.51 16 33 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 34 H 0.42 -3.66 8.70 -92.71 -0.81 -4.47 16 35 H 0.12 -0.67 8.14 -2.39 -0.02 -0.69 16 36 H 0.13 -0.82 8.14 -2.39 -0.02 -0.84 16 37 H 0.07 0.22 7.61 -2.39 -0.02 0.20 16 38 H 0.07 0.25 7.63 -2.39 -0.02 0.23 16 39 H 0.13 0.84 8.06 -2.91 -0.02 0.81 16 40 H 0.11 0.28 7.96 -2.38 -0.02 0.26 16 41 H 0.40 -2.33 8.70 -74.06 -0.64 -2.98 16 42 H -0.30 -1.73 7.11 99.48 0.71 -1.02 16 43 H -0.28 -0.80 7.11 99.48 0.71 -0.09 16 44 H 0.15 -0.64 4.87 -2.92 -0.01 -0.65 16 45 H 0.15 -0.66 8.06 -2.91 -0.02 -0.68 16 46 H 0.14 0.32 6.30 -2.91 -0.02 0.30 16 47 H 0.06 0.13 8.14 -2.38 -0.02 0.11 16 48 H 0.11 -0.52 7.90 -2.39 -0.02 -0.54 16 Total: 0.00 -36.87 410.85 -4.02 -40.89 By element: Atomic # 1 Polarization: -24.63 SS G_CDS: -0.42 Total: -25.05 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 4.47 Total: 20.48 kcal Atomic # 7 Polarization: 2.29 SS G_CDS: -2.32 Total: -0.03 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -7.50 Total: -27.49 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.04 Total: 0.90 kcal Atomic # 16 Polarization: -9.39 SS G_CDS: -0.30 Total: -9.70 kcal Total: -36.87 -4.02 -40.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_4549614.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.048 kcal (2) G-P(sol) polarization free energy of solvation -36.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds