Wall clock time and date at job start Tue Mar 9 2021 12:53:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42101 * 108.57908 * 2 1 4 4 O 1.42102 * 108.57695 * 228.97994 * 2 1 3 5 5 C 1.81394 * 101.92269 * 114.49181 * 2 1 3 6 6 C 1.52998 * 109.47135 * 179.97438 * 5 2 1 7 7 H 1.08992 * 112.84981 * 316.19532 * 6 5 2 8 8 C 1.53782 * 113.68815 * 87.46857 * 6 5 2 9 9 C 1.53783 * 87.07944 * 139.99130 * 8 6 5 10 10 H 1.09006 * 113.68561 * 220.00242 * 9 8 6 11 11 N 1.46505 * 113.61369 * 89.11790 * 9 8 6 12 12 C 1.34770 * 120.00152 * 107.50053 * 11 9 8 13 13 O 1.21281 * 120.00374 * 359.97438 * 12 11 9 14 14 C 1.50705 * 120.00050 * 179.97438 * 12 11 9 15 15 C 1.52996 * 109.46957 * 180.02562 * 14 12 11 16 16 C 1.53004 * 109.46845 * 179.97438 * 15 14 12 17 17 O 1.42902 * 109.47331 * 179.97438 * 16 15 14 18 18 C 1.35900 * 116.99943 * 180.02562 * 17 16 15 19 19 C 1.38707 * 120.05163 * 180.02562 * 18 17 16 20 20 C 1.38166 * 119.94172 * 179.97438 * 19 18 17 21 21 C 1.50701 * 119.97212 * 180.02562 * 20 19 18 22 22 O 1.42902 * 109.46980 * 299.99951 * 21 20 19 23 23 Si 1.86295 * 109.47294 * 180.02562 * 21 20 19 24 24 C 1.38244 * 120.05849 * 359.72378 * 20 19 18 25 25 C 1.38288 * 120.10735 * 0.54781 * 24 20 19 26 26 C 1.38126 * 120.05387 * 359.44975 * 25 24 20 27 27 C 1.53779 * 87.08159 * 334.56426 * 9 8 6 28 28 H 1.09004 * 109.47009 * 305.51134 * 1 2 3 29 29 H 1.09002 * 109.47200 * 65.50681 * 1 2 3 30 30 H 1.09000 * 109.47363 * 185.50954 * 1 2 3 31 31 H 1.09006 * 109.47341 * 59.99742 * 5 2 1 32 32 H 1.08995 * 109.47163 * 300.00051 * 5 2 1 33 33 H 1.08998 * 113.61566 * 25.43924 * 8 6 5 34 34 H 1.09001 * 113.61083 * 254.53525 * 8 6 5 35 35 H 0.97001 * 119.99264 * 287.49368 * 11 9 8 36 36 H 1.08997 * 109.46691 * 59.99902 * 14 12 11 37 37 H 1.09006 * 109.46862 * 300.00005 * 14 12 11 38 38 H 1.08997 * 109.47587 * 60.00344 * 15 14 12 39 39 H 1.08992 * 109.47208 * 299.99528 * 15 14 12 40 40 H 1.09002 * 109.47424 * 59.99753 * 16 15 14 41 41 H 1.08998 * 109.47079 * 300.00142 * 16 15 14 42 42 H 1.08007 * 120.02994 * 359.94447 * 19 18 17 43 43 H 1.08997 * 109.47272 * 59.99834 * 21 20 19 44 44 H 0.96705 * 114.00185 * 179.97438 * 22 21 20 45 45 H 1.48496 * 110.00198 * 59.99888 * 23 21 20 46 46 H 1.48508 * 110.00272 * 181.32082 * 23 21 20 47 47 H 1.07993 * 119.94966 * 180.29953 * 24 20 19 48 48 H 1.08002 * 119.97455 * 179.73146 * 25 24 20 49 49 H 1.08000 * 120.02655 * 180.29782 * 26 25 24 50 50 H 1.08996 * 113.61031 * 139.98525 * 27 9 8 51 51 H 1.08999 * 113.61079 * 270.88254 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8841 -1.0163 5 6 2.1887 -0.7358 1.6151 6 6 3.7054 -0.8197 1.7978 7 1 4.2199 -1.1778 0.9061 8 6 4.3267 0.4523 2.3985 9 6 5.2305 -0.4754 3.2277 10 1 5.3821 -0.1373 4.2528 11 7 6.4825 -0.8301 2.5546 12 6 7.6476 -0.2994 2.9754 13 8 7.6597 0.4721 3.9111 14 6 8.9356 -0.6648 2.2834 15 6 10.0997 0.0688 2.9522 16 6 11.4074 -0.3026 2.2500 17 8 12.4947 0.3831 2.8743 18 6 13.7360 0.1623 2.3670 19 6 14.8371 0.7949 2.9250 20 6 16.0981 0.5684 2.4078 21 6 17.2949 1.2549 3.0139 22 8 17.1311 2.6712 2.9174 23 14 18.8341 0.7446 2.0967 24 6 16.2637 -0.2923 1.3387 25 6 15.1668 -0.9199 0.7770 26 6 13.9041 -0.6968 1.2905 27 6 4.1316 -1.5419 3.0868 28 1 -0.3633 0.5970 0.8366 29 1 -0.3634 0.4261 -0.9352 30 1 -0.3634 -1.0229 0.0987 31 1 1.7610 -1.7371 1.6663 32 1 1.7611 -0.1173 2.4041 33 1 3.6304 1.0360 3.0006 34 1 4.8705 1.0572 1.6729 35 1 6.4727 -1.4470 1.8061 36 1 8.8786 -0.3761 1.2339 37 1 9.0946 -1.7407 2.3563 38 1 10.1566 -0.2202 4.0017 39 1 9.9409 1.1447 2.8797 40 1 11.3509 -0.0139 1.2004 41 1 11.5660 -1.3785 2.3229 42 1 14.7088 1.4644 3.7628 43 1 17.3849 0.9701 4.0621 44 1 17.8658 3.1784 3.2891 45 1 18.7236 1.1278 0.6663 46 1 20.0253 1.3900 2.7049 47 1 17.2507 -0.4718 0.9389 48 1 15.2981 -1.5885 -0.0609 49 1 13.0484 -1.1909 0.8546 50 1 4.5179 -2.5469 2.9169 51 1 3.3820 -1.5035 3.8772 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_4549616.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:53:58 Heat of formation + Delta-G solvation = -131.860506 kcal Electronic energy + Delta-G solvation = -31560.776599 eV Core-core repulsion = 26941.132940 eV Total energy + Delta-G solvation = -4619.643658 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 384.153 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.43021 -41.19863 -39.66154 -39.09016 -37.97392 -37.48707 -37.00760 -34.93539 -34.66914 -32.58637 -31.40110 -30.96669 -30.15213 -28.28349 -26.82336 -26.74397 -24.44450 -23.66740 -23.31021 -21.81226 -21.51185 -20.35528 -19.80384 -18.94880 -18.59870 -18.28961 -17.64803 -17.48120 -17.30439 -17.16204 -17.01558 -16.89699 -16.86570 -16.37316 -15.85802 -15.70582 -15.59851 -15.36293 -14.85825 -14.66855 -14.53738 -14.24753 -14.14526 -14.00792 -13.92075 -13.89834 -13.55481 -13.46301 -13.26387 -13.25149 -13.13403 -13.01478 -12.90241 -12.68060 -12.42581 -12.37481 -12.22174 -12.19320 -11.96919 -11.86795 -11.66661 -11.60588 -11.33317 -11.05000 -10.96040 -10.58419 -10.11242 -9.88442 -9.24267 -4.92258 -0.90683 0.21532 0.41055 1.27962 1.55891 1.61307 1.89165 1.90992 1.96428 2.35624 2.64504 2.74982 3.11162 3.36147 3.38427 3.44593 3.58544 3.65316 3.75274 3.77933 3.85453 3.87971 3.98259 4.07961 4.09494 4.11918 4.16731 4.20437 4.27006 4.34256 4.34948 4.39426 4.40550 4.50679 4.53236 4.61751 4.68567 4.74887 4.81514 4.86036 4.96936 4.98588 4.99014 4.99451 5.01527 5.13393 5.17802 5.28063 5.38531 5.47016 5.57318 5.73909 6.42607 6.48928 6.55698 7.21028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.407 3.593 3 O -0.989 6.989 4 O -0.990 6.990 5 C -0.584 4.584 6 C -0.110 4.110 7 H 0.103 0.897 8 C -0.161 4.161 9 C 0.106 3.894 10 H 0.087 0.913 11 N -0.705 5.705 12 C 0.510 3.490 13 O -0.587 6.587 14 C -0.129 4.129 15 C -0.101 4.101 16 C 0.057 3.943 17 O -0.339 6.339 18 C 0.116 3.884 19 C -0.153 4.153 20 C -0.048 4.048 21 C -0.096 4.096 22 O -0.561 6.561 23 Si 0.780 3.220 24 C -0.162 4.162 25 C -0.072 4.072 26 C -0.207 4.207 27 C -0.112 4.112 28 H 0.151 0.849 29 H 0.127 0.873 30 H 0.154 0.846 31 H 0.171 0.829 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.058 0.942 35 H 0.418 0.582 36 H 0.124 0.876 37 H 0.132 0.868 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.116 0.884 43 H 0.092 0.908 44 H 0.395 0.605 45 H -0.296 1.296 46 H -0.285 1.285 47 H 0.147 0.853 48 H 0.162 0.838 49 H 0.155 0.845 50 H 0.094 0.906 51 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.243 -10.074 -0.113 10.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.597 3.403 3 O -0.986 6.986 4 O -0.988 6.988 5 C -0.715 4.715 6 C -0.130 4.130 7 H 0.121 0.879 8 C -0.200 4.200 9 C 0.000 4.000 10 H 0.105 0.895 11 N -0.357 5.357 12 C 0.299 3.701 13 O -0.467 6.467 14 C -0.168 4.168 15 C -0.139 4.139 16 C -0.017 4.017 17 O -0.253 6.253 18 C 0.071 3.929 19 C -0.172 4.172 20 C -0.049 4.049 21 C -0.204 4.204 22 O -0.371 6.371 23 Si 0.684 3.316 24 C -0.180 4.180 25 C -0.090 4.090 26 C -0.225 4.225 27 C -0.151 4.151 28 H 0.170 0.830 29 H 0.145 0.855 30 H 0.172 0.828 31 H 0.189 0.811 32 H 0.180 0.820 33 H 0.124 0.876 34 H 0.077 0.923 35 H 0.255 0.745 36 H 0.142 0.858 37 H 0.150 0.850 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.134 0.866 43 H 0.110 0.890 44 H 0.245 0.755 45 H -0.224 1.224 46 H -0.212 1.212 47 H 0.164 0.836 48 H 0.179 0.821 49 H 0.173 0.827 50 H 0.112 0.888 51 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -3.612 -9.012 -0.727 9.736 hybrid contribution -0.671 1.298 0.661 1.604 sum -4.283 -7.714 -0.066 8.824 Atomic orbital electron populations 1.30157 1.22860 1.13816 1.12963 1.07800 0.79637 0.74482 0.78430 1.93559 1.80715 1.36854 1.87504 1.93548 1.80873 1.67596 1.56758 1.30174 1.03953 1.16263 1.21149 1.22394 0.92025 0.98291 1.00249 0.87913 1.23713 0.99557 0.96676 1.00031 1.21904 0.83589 0.97625 0.96911 0.89514 1.45651 1.05538 1.48257 1.36279 1.21204 0.86505 0.79335 0.83087 1.90732 1.87815 1.37100 1.31065 1.21552 0.89128 1.04360 1.01760 1.21146 0.91503 1.01040 1.00259 1.23000 0.83826 0.97504 0.97365 1.86047 1.13931 1.67503 1.57821 1.19181 0.84527 0.95480 0.93756 1.20323 0.90828 1.02928 1.03119 1.19293 0.93150 0.96548 0.95871 1.25224 1.05583 0.83189 1.06357 1.86556 1.48847 1.16848 1.84813 0.93986 0.71730 0.90237 0.75672 1.21142 1.00273 0.99691 0.96858 1.21302 0.90899 0.97750 0.99023 1.21608 1.00281 1.02265 0.98349 1.23302 0.96804 0.98232 0.96744 0.83012 0.85471 0.82782 0.81135 0.81986 0.87600 0.92306 0.74492 0.85753 0.84989 0.91831 0.92488 0.90177 0.89408 0.86589 0.89002 0.75464 1.22362 1.21249 0.83607 0.82079 0.82703 0.88765 0.86386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.13 10.62 113.37 1.20 8.34 16 2 S 2.41 -9.09 5.35 -56.49 -0.30 -9.40 16 3 O -0.99 -6.06 18.10 -127.37 -2.31 -8.37 16 4 O -0.99 -5.01 18.10 -127.37 -2.31 -7.32 16 5 C -0.58 6.67 5.64 71.98 0.41 7.07 16 6 C -0.11 0.72 3.53 -10.27 -0.04 0.68 16 7 H 0.10 -0.63 8.13 -2.39 -0.02 -0.65 16 8 C -0.16 0.22 7.43 31.12 0.23 0.45 16 9 C 0.11 -0.19 4.32 45.52 0.20 0.01 16 10 H 0.09 0.24 7.47 -2.38 -0.02 0.23 16 11 N -0.71 2.03 5.26 -440.02 -2.32 -0.29 16 12 C 0.51 1.30 7.83 87.66 0.69 1.99 16 13 O -0.59 -7.84 15.58 -3.03 -0.05 -7.88 16 14 C -0.13 0.65 5.70 29.85 0.17 0.82 16 15 C -0.10 -0.16 4.87 30.59 0.15 -0.01 16 16 C 0.06 -0.04 4.74 71.98 0.34 0.30 16 17 O -0.34 -2.71 10.14 -92.42 -0.94 -3.64 16 18 C 0.12 0.84 6.69 22.50 0.15 0.99 16 19 C -0.15 -1.41 9.55 22.36 0.21 -1.20 16 20 C -0.05 -0.28 5.42 -19.88 -0.11 -0.39 16 21 C -0.10 -0.24 2.81 71.24 0.20 -0.04 16 22 O -0.56 -3.29 12.74 -148.98 -1.90 -5.18 16 23 Si 0.78 -0.70 29.79 68.60 2.04 1.35 16 24 C -0.16 -0.32 8.67 22.28 0.19 -0.13 16 25 C -0.07 0.01 10.04 22.26 0.22 0.24 16 26 C -0.21 -0.31 9.04 22.36 0.20 -0.11 16 27 C -0.11 0.97 7.39 31.12 0.23 1.20 16 28 H 0.15 -2.31 8.14 -2.39 -0.02 -2.33 16 29 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 30 H 0.15 -2.44 8.14 -2.39 -0.02 -2.46 16 31 H 0.17 -3.03 8.14 -2.39 -0.02 -3.05 16 32 H 0.16 -2.62 7.85 -2.39 -0.02 -2.64 16 33 H 0.11 -0.34 7.90 -2.39 -0.02 -0.35 16 34 H 0.06 0.20 8.14 -2.39 -0.02 0.18 16 35 H 0.42 -3.90 8.70 -92.71 -0.81 -4.71 16 36 H 0.12 -1.20 8.14 -2.39 -0.02 -1.22 16 37 H 0.13 -1.49 8.14 -2.38 -0.02 -1.51 16 38 H 0.06 0.34 8.10 -2.39 -0.02 0.32 16 39 H 0.06 0.38 8.10 -2.39 -0.02 0.36 16 40 H 0.08 -0.32 7.66 -2.39 -0.02 -0.34 16 41 H 0.09 -0.47 7.66 -2.39 -0.02 -0.49 16 42 H 0.12 1.27 8.06 -2.91 -0.02 1.24 16 43 H 0.09 -0.08 7.96 -2.39 -0.02 -0.10 16 44 H 0.39 -1.09 8.74 -74.05 -0.65 -1.73 16 45 H -0.30 -1.77 7.11 99.48 0.71 -1.06 16 46 H -0.29 -0.83 7.11 99.48 0.71 -0.13 16 47 H 0.15 -0.38 4.87 -2.91 -0.01 -0.39 16 48 H 0.16 -1.08 8.06 -2.91 -0.02 -1.10 16 49 H 0.16 -0.69 6.30 -2.91 -0.02 -0.70 16 50 H 0.09 -1.01 8.14 -2.39 -0.02 -1.03 16 51 H 0.12 -1.36 8.10 -2.39 -0.02 -1.38 16 Total: 0.00 -42.92 432.36 -3.88 -46.79 By element: Atomic # 1 Polarization: -25.81 SS G_CDS: -0.46 Total: -26.28 kcal Atomic # 6 Polarization: 15.56 SS G_CDS: 4.65 Total: 20.22 kcal Atomic # 7 Polarization: 2.03 SS G_CDS: -2.32 Total: -0.29 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -7.49 Total: -32.40 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: 2.04 Total: 1.35 kcal Atomic # 16 Polarization: -9.09 SS G_CDS: -0.30 Total: -9.40 kcal Total: -42.92 -3.88 -46.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_4549616.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.067 kcal (2) G-P(sol) polarization free energy of solvation -42.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds