Wall clock time and date at job start Tue Mar 9 2021 12:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42105 * 108.57744 * 2 1 4 4 O 1.42100 * 108.58042 * 228.97133 * 2 1 3 5 5 C 1.81405 * 101.91965 * 114.48310 * 2 1 3 6 6 C 1.52995 * 109.46861 * 180.02562 * 5 2 1 7 7 H 1.08998 * 112.85321 * 43.80845 * 6 5 2 8 8 C 1.53781 * 113.61203 * 174.99998 * 6 5 2 9 9 C 1.53782 * 87.08045 * 140.06518 * 8 6 5 10 10 H 1.09006 * 113.61404 * 219.93576 * 9 8 6 11 11 N 1.46500 * 113.61597 * 89.11695 * 9 8 6 12 12 C 1.34782 * 120.00085 * 154.99932 * 11 9 8 13 13 O 1.21277 * 119.99690 * 359.97438 * 12 11 9 14 14 C 1.50694 * 119.99926 * 180.02562 * 12 11 9 15 15 O 1.42901 * 109.46937 * 180.02562 * 14 12 11 16 16 C 1.35905 * 116.99604 * 180.02562 * 15 14 12 17 17 C 1.38719 * 120.05115 * 180.02562 * 16 15 14 18 18 N 1.47999 * 120.02852 * 0.02562 * 17 16 15 19 19 O 1.21799 * 119.99970 * 180.02562 * 18 17 16 20 20 O 1.21806 * 120.00142 * 0.02562 * 18 17 16 21 21 C 1.38169 * 119.93949 * 180.02562 * 17 16 15 22 22 C 1.38233 * 120.05807 * 0.02562 * 21 17 16 23 23 C 1.50706 * 119.94583 * 180.02562 * 22 21 17 24 24 O 1.42900 * 109.46639 * 299.99694 * 23 22 21 25 25 Si 1.86297 * 109.47330 * 179.97438 * 23 22 21 26 26 C 1.38291 * 120.11365 * 359.97411 * 22 21 17 27 27 C 1.38126 * 120.05336 * 359.72610 * 26 22 21 28 28 C 1.53775 * 87.08035 * 334.56539 * 9 8 6 29 29 H 1.09009 * 109.47052 * 305.51984 * 1 2 3 30 30 H 1.09004 * 109.46796 * 65.51355 * 1 2 3 31 31 H 1.08991 * 109.47150 * 185.51658 * 1 2 3 32 32 H 1.08993 * 109.47022 * 59.99870 * 5 2 1 33 33 H 1.09003 * 109.47290 * 300.00020 * 5 2 1 34 34 H 1.08998 * 113.61863 * 25.51463 * 8 6 5 35 35 H 1.08996 * 113.61650 * 254.61263 * 8 6 5 36 36 H 0.96995 * 119.99981 * 335.00488 * 11 9 8 37 37 H 1.08999 * 109.47314 * 60.00033 * 14 12 11 38 38 H 1.08998 * 109.47471 * 300.00068 * 14 12 11 39 39 H 1.08003 * 119.96632 * 179.97438 * 21 17 16 40 40 H 1.09002 * 109.47118 * 59.99475 * 23 22 21 41 41 H 0.96698 * 114.00115 * 299.99962 * 24 23 22 42 42 H 1.48501 * 110.00010 * 58.67790 * 25 23 22 43 43 H 1.48501 * 110.00199 * 180.02562 * 25 23 22 44 44 H 1.07998 * 119.97198 * 180.02562 * 26 22 21 45 45 H 1.08001 * 120.02840 * 180.29809 * 27 26 22 46 46 H 1.09005 * 113.61232 * 139.98129 * 28 9 8 47 47 H 1.08998 * 113.62104 * 270.88530 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8183 1.7985 7 1 4.2199 0.0895 1.4835 8 6 4.1315 -1.3167 3.1895 9 6 5.2304 -2.1230 2.4773 10 1 5.3820 -3.1183 2.8952 11 7 6.4824 -1.3824 2.3033 12 6 7.6476 -2.0483 2.1792 13 8 7.6597 -3.2605 2.2121 14 6 8.9355 -1.2864 2.0007 15 8 10.0227 -2.2075 1.8926 16 6 11.2641 -1.6798 1.7268 17 6 12.3651 -2.5161 1.6142 18 7 12.1890 -3.9844 1.6740 19 8 13.1561 -4.7182 1.5756 20 8 11.0769 -4.4589 1.8217 21 6 13.6261 -1.9771 1.4461 22 6 13.7913 -0.6058 1.3907 23 6 15.1679 -0.0207 1.2068 24 8 16.0065 -0.4266 2.2903 25 14 15.0530 1.8384 1.1725 26 6 12.6953 0.2301 1.5027 27 6 11.4317 -0.3039 1.6646 28 6 4.3267 -2.1064 1.2333 29 1 -0.3634 0.5971 0.8365 30 1 -0.3633 0.4260 -0.9353 31 1 -0.3633 -1.0228 0.0988 32 1 1.7610 -1.7368 1.6666 33 1 1.7610 -0.1169 2.4043 34 1 3.3819 -1.9381 3.6793 35 1 4.5177 -0.5289 3.8362 36 1 6.4727 -0.4129 2.2774 37 1 9.0945 -0.6352 2.8602 38 1 8.8786 -0.6840 1.0941 39 1 14.4837 -2.6279 1.3589 40 1 15.5910 -0.3757 0.2671 41 1 15.6904 -0.1445 3.1595 42 1 14.4479 2.3333 2.4351 43 1 16.4039 2.4276 0.9909 44 1 12.8269 1.3011 1.4587 45 1 10.5755 0.3492 1.7472 46 1 4.8705 -1.9561 0.3006 47 1 3.6303 -2.9437 1.1881 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_4549638.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:28 Heat of formation + Delta-G solvation = -112.705814 kcal Electronic energy + Delta-G solvation = -35091.827664 eV Core-core repulsion = 29953.073417 eV Total energy + Delta-G solvation = -5138.754246 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 401.116 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.30133 -41.84583 -41.20520 -39.93895 -39.08745 -37.94742 -37.62707 -37.47183 -36.98229 -34.84537 -33.48908 -32.28539 -31.32059 -30.28517 -29.40761 -27.82863 -26.72450 -26.59428 -24.54126 -23.80318 -22.86069 -22.02967 -20.59479 -20.36447 -19.79653 -19.77127 -19.16268 -18.64731 -18.55957 -18.24784 -17.64598 -17.61035 -17.33549 -17.03824 -16.90468 -16.81616 -16.36679 -16.18057 -15.85100 -15.77070 -15.52600 -15.20728 -14.93880 -14.75968 -14.15963 -14.05641 -14.00866 -13.90709 -13.85537 -13.68682 -13.45766 -13.22763 -13.11563 -12.99096 -12.90027 -12.71297 -12.42554 -12.39525 -12.34104 -12.28122 -12.22361 -12.16814 -11.84844 -11.81771 -11.31474 -11.08386 -10.97430 -10.84588 -10.75895 -10.17777 -9.80966 -4.91730 -1.32026 -0.88114 -0.25076 0.15092 0.34715 1.18261 1.26278 1.41050 1.60305 1.92958 2.01451 2.04277 2.29301 2.77158 3.10461 3.13779 3.22815 3.34114 3.39707 3.43745 3.46256 3.57732 3.67785 3.70939 3.75903 3.78259 3.90781 4.00628 4.10126 4.12278 4.22518 4.28552 4.38887 4.41824 4.53765 4.55336 4.63313 4.76903 4.82645 4.83358 4.84449 4.98852 5.00884 5.03715 5.06872 5.14682 5.18591 5.52743 5.74619 6.40399 6.41595 6.44665 7.12130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.648 4.648 2 S 2.409 3.591 3 O -0.989 6.989 4 O -0.989 6.989 5 C -0.585 4.585 6 C -0.109 4.109 7 H 0.108 0.892 8 C -0.110 4.110 9 C 0.108 3.892 10 H 0.086 0.914 11 N -0.694 5.694 12 C 0.509 3.491 13 O -0.563 6.563 14 C 0.024 3.976 15 O -0.292 6.292 16 C 0.193 3.807 17 C -0.104 4.104 18 N 0.034 4.966 19 O -0.202 6.202 20 O -0.174 6.174 21 C -0.003 4.003 22 C -0.147 4.147 23 C -0.090 4.090 24 O -0.551 6.551 25 Si 0.788 3.212 26 C -0.004 4.004 27 C -0.189 4.189 28 C -0.162 4.162 29 H 0.153 0.847 30 H 0.126 0.874 31 H 0.150 0.850 32 H 0.161 0.839 33 H 0.171 0.829 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.422 0.578 37 H 0.147 0.853 38 H 0.144 0.856 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.389 0.611 42 H -0.261 1.261 43 H -0.309 1.309 44 H 0.189 0.811 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.015 13.830 3.417 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.598 3.402 3 O -0.986 6.986 4 O -0.986 6.986 5 C -0.716 4.716 6 C -0.129 4.129 7 H 0.126 0.874 8 C -0.149 4.149 9 C 0.002 3.998 10 H 0.104 0.896 11 N -0.349 5.349 12 C 0.295 3.705 13 O -0.440 6.440 14 C -0.053 4.053 15 O -0.202 6.202 16 C 0.143 3.857 17 C -0.190 4.190 18 N 0.544 4.456 19 O -0.410 6.410 20 O -0.388 6.388 21 C -0.022 4.022 22 C -0.149 4.149 23 C -0.197 4.197 24 O -0.359 6.359 25 Si 0.691 3.309 26 C -0.022 4.022 27 C -0.207 4.207 28 C -0.200 4.200 29 H 0.172 0.828 30 H 0.145 0.855 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.189 0.811 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.260 0.740 37 H 0.164 0.836 38 H 0.162 0.838 39 H 0.168 0.832 40 H 0.145 0.855 41 H 0.239 0.761 42 H -0.186 1.186 43 H -0.237 1.237 44 H 0.206 0.794 45 H 0.223 0.777 46 H 0.080 0.920 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.836 14.184 2.627 15.963 hybrid contribution -0.104 -1.537 1.299 2.015 sum -6.939 12.647 3.926 14.950 Atomic orbital electron populations 1.30172 1.23157 1.13653 1.12997 1.07762 0.79502 0.74447 0.78475 1.93548 1.80790 1.36707 1.87562 1.93563 1.80648 1.67505 1.56903 1.30180 1.04108 1.16078 1.21262 1.22423 0.91955 0.98903 0.99582 0.87369 1.23305 0.96553 1.00046 0.95025 1.21914 0.83049 0.97148 0.97653 0.89607 1.45346 1.04763 1.11098 1.73693 1.20530 0.85883 0.87877 0.76172 1.90847 1.87228 1.16234 1.49709 1.23128 0.82393 0.91492 1.08291 1.86471 1.12838 1.36008 1.84846 1.18980 0.83278 0.92740 0.90655 1.20864 0.96584 0.77526 1.23994 1.43902 1.00108 1.04515 0.97058 1.94501 1.32110 1.59058 1.55312 1.94681 1.11298 1.79795 1.53029 1.20842 0.93553 0.96950 0.90871 1.20381 0.98038 0.91238 1.05213 1.25514 0.87223 1.13595 0.93402 1.86632 1.51379 1.79410 1.18483 0.94154 0.81579 0.69524 0.85674 1.21723 0.90240 1.02057 0.88144 1.21809 1.01680 0.90247 1.06991 1.23724 0.99495 0.98782 0.98043 0.82824 0.85525 0.83144 0.82136 0.81091 0.86488 0.88375 0.73954 0.83602 0.83849 0.83160 0.85499 0.76145 1.18616 1.23725 0.79438 0.77729 0.92010 0.87719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.79 10.62 113.37 1.20 8.99 16 2 S 2.41 -12.96 5.35 -56.49 -0.30 -13.27 16 3 O -0.99 -3.00 18.10 -127.37 -2.31 -5.31 16 4 O -0.99 -4.61 18.10 -127.37 -2.31 -6.91 16 5 C -0.58 7.66 5.64 71.98 0.41 8.07 16 6 C -0.11 0.97 3.53 -10.27 -0.04 0.94 16 7 H 0.11 -1.04 8.13 -2.39 -0.02 -1.06 16 8 C -0.11 1.20 7.39 31.12 0.23 1.43 16 9 C 0.11 -0.40 4.32 45.52 0.20 -0.21 16 10 H 0.09 0.16 7.46 -2.38 -0.02 0.14 16 11 N -0.69 4.10 5.26 -440.04 -2.32 1.78 16 12 C 0.51 0.75 7.91 87.65 0.69 1.44 16 13 O -0.56 -8.55 16.10 16.02 0.26 -8.29 16 14 C 0.02 -0.16 5.22 71.23 0.37 0.21 16 15 O -0.29 -1.42 7.68 -63.45 -0.49 -1.91 16 16 C 0.19 0.17 6.67 22.51 0.15 0.32 16 17 C -0.10 -0.77 6.87 36.48 0.25 -0.52 16 18 N 0.03 0.59 4.45 -46.24 -0.21 0.38 16 19 O -0.20 -3.87 18.45 18.89 0.35 -3.52 16 20 O -0.17 -3.87 17.24 25.60 0.44 -3.43 16 21 C 0.00 -0.01 9.11 22.25 0.20 0.20 16 22 C -0.15 0.81 5.39 -19.85 -0.11 0.71 16 23 C -0.09 0.55 2.82 71.24 0.20 0.75 16 24 O -0.55 0.67 12.77 -148.98 -1.90 -1.24 16 25 Si 0.79 -7.70 29.78 68.60 2.04 -5.66 16 26 C 0.00 0.05 8.66 22.26 0.19 0.24 16 27 C -0.19 1.99 9.04 22.36 0.20 2.19 16 28 C -0.16 0.52 7.43 31.12 0.23 0.75 16 29 H 0.15 -2.58 8.14 -2.39 -0.02 -2.60 16 30 H 0.13 -1.31 8.14 -2.39 -0.02 -1.33 16 31 H 0.15 -2.40 8.14 -2.39 -0.02 -2.42 16 32 H 0.16 -2.79 7.85 -2.39 -0.02 -2.81 16 33 H 0.17 -3.33 8.14 -2.39 -0.02 -3.35 16 34 H 0.12 -1.53 8.10 -2.39 -0.02 -1.55 16 35 H 0.10 -1.34 8.14 -2.39 -0.02 -1.36 16 36 H 0.42 -6.00 8.70 -92.71 -0.81 -6.81 16 37 H 0.15 -2.34 7.67 -2.39 -0.02 -2.36 16 38 H 0.14 -2.19 7.65 -2.39 -0.02 -2.20 16 39 H 0.15 0.61 7.61 -2.91 -0.02 0.59 16 40 H 0.13 -0.84 7.96 -2.39 -0.02 -0.86 16 41 H 0.39 -2.95 8.70 -74.06 -0.64 -3.59 16 42 H -0.26 2.26 7.11 99.48 0.71 2.96 16 43 H -0.31 -0.09 7.11 99.48 0.71 0.62 16 44 H 0.19 -3.57 4.87 -2.91 -0.01 -3.59 16 45 H 0.21 -4.20 6.30 -2.91 -0.02 -4.22 16 46 H 0.06 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.10 -0.46 7.90 -2.39 -0.02 -0.47 16 Total: 0.00 -55.36 415.89 -2.70 -58.06 By element: Atomic # 1 Polarization: -35.84 SS G_CDS: -0.36 Total: -36.20 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 4.39 Total: 25.51 kcal Atomic # 7 Polarization: 4.69 SS G_CDS: -2.52 Total: 2.17 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -5.95 Total: -30.61 kcal Atomic # 14 Polarization: -7.70 SS G_CDS: 2.04 Total: -5.66 kcal Atomic # 16 Polarization: -12.96 SS G_CDS: -0.30 Total: -13.27 kcal Total: -55.36 -2.70 -58.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_4549638.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.649 kcal (2) G-P(sol) polarization free energy of solvation -55.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds