Wall clock time and date at job start Tue Mar 9 2021 12:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42105 * 108.57791 * 2 1 4 4 O 1.42098 * 108.57693 * 228.97901 * 2 1 3 5 5 C 1.81397 * 101.92255 * 114.49049 * 2 1 3 6 6 C 1.53006 * 109.47077 * 180.02562 * 5 2 1 7 7 H 1.08999 * 112.84944 * 43.79743 * 6 5 2 8 8 C 1.53777 * 113.61288 * 174.99915 * 6 5 2 9 9 C 1.53781 * 87.08184 * 140.06125 * 8 6 5 10 10 H 1.08993 * 113.61848 * 219.93408 * 9 8 6 11 11 N 1.46506 * 113.61193 * 89.11272 * 9 8 6 12 12 C 1.34779 * 119.99461 * 155.00132 * 11 9 8 13 13 O 1.21275 * 120.00183 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99413 * 180.02562 * 12 11 9 15 15 O 1.42900 * 109.46630 * 180.02562 * 14 12 11 16 16 C 1.35906 * 116.99895 * 180.02562 * 15 14 12 17 17 C 1.38711 * 120.05793 * 180.02562 * 16 15 14 18 18 C 1.38160 * 119.94449 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.97128 * 179.97438 * 18 17 16 20 20 O 1.42893 * 109.47232 * 300.00298 * 19 18 17 21 21 Si 1.86306 * 109.47121 * 180.02562 * 19 18 17 22 22 C 1.38244 * 120.05921 * 0.02562 * 18 17 16 23 23 C 1.38299 * 120.10751 * 0.02562 * 22 18 17 24 24 C 1.38125 * 120.05603 * 359.68510 * 23 22 18 25 25 C 1.53779 * 113.68766 * 272.53367 * 6 5 2 26 26 H 1.09000 * 109.46754 * 305.51150 * 1 2 3 27 27 H 1.09004 * 109.47081 * 65.50960 * 1 2 3 28 28 H 1.09002 * 109.47087 * 185.50822 * 1 2 3 29 29 H 1.08992 * 109.47154 * 60.00160 * 5 2 1 30 30 H 1.09004 * 109.47011 * 299.99577 * 5 2 1 31 31 H 1.09005 * 113.61435 * 25.51551 * 8 6 5 32 32 H 1.08996 * 113.69073 * 254.62041 * 8 6 5 33 33 H 0.96995 * 119.99814 * 335.00080 * 11 9 8 34 34 H 1.08994 * 109.46865 * 299.99905 * 14 12 11 35 35 H 1.08994 * 109.47394 * 60.00070 * 14 12 11 36 36 H 1.08002 * 120.02436 * 359.97438 * 17 16 15 37 37 H 1.09000 * 109.46708 * 60.00162 * 19 18 17 38 38 H 0.96709 * 113.99827 * 299.99657 * 20 19 18 39 39 H 1.48495 * 110.00042 * 180.02562 * 21 19 18 40 40 H 1.48498 * 109.99776 * 301.32247 * 21 19 18 41 41 H 1.07995 * 119.94953 * 180.02562 * 22 18 17 42 42 H 1.07998 * 119.96866 * 179.97438 * 23 22 18 43 43 H 1.08001 * 120.02957 * 180.31721 * 24 23 22 44 44 H 1.09003 * 113.61721 * 105.45755 * 25 6 5 45 45 H 1.09001 * 113.61225 * 334.55796 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7056 -0.8185 1.7983 7 1 4.2201 0.0893 1.4832 8 6 4.1317 -1.3170 3.1892 9 6 5.2305 -2.1234 2.4769 10 1 5.3821 -3.1186 2.8947 11 7 6.4825 -1.3827 2.3028 12 6 7.6477 -2.0486 2.1787 13 8 7.6597 -3.2609 2.2106 14 6 8.9356 -1.2866 2.0002 15 8 10.0228 -2.2077 1.8919 16 6 11.2642 -1.6801 1.7260 17 6 12.3652 -2.5163 1.6133 18 6 13.6262 -1.9775 1.4453 19 6 14.8228 -2.8854 1.3233 20 8 14.9409 -3.6792 2.5056 21 14 16.3624 -1.8584 1.1092 22 6 13.7914 -0.6060 1.3899 23 6 12.6955 0.2299 1.5031 24 6 11.4320 -0.3040 1.6653 25 6 4.3268 -2.1065 1.2328 26 1 -0.3633 0.5969 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0229 0.0986 29 1 1.7611 -1.7370 1.6663 30 1 1.7611 -0.1171 2.4042 31 1 3.3820 -1.9386 3.6789 32 1 4.5180 -0.5302 3.8371 33 1 6.4728 -0.4131 2.2770 34 1 8.8786 -0.6842 1.0936 35 1 9.0947 -0.6355 2.8597 36 1 12.2367 -3.5878 1.6577 37 1 14.6974 -3.5375 0.4589 38 1 15.0554 -3.1635 3.3157 39 1 17.5495 -2.7421 0.9871 40 1 16.2391 -1.0043 -0.0994 41 1 14.7779 -0.1867 1.2581 42 1 12.8272 1.3009 1.4600 43 1 10.5758 0.3490 1.7485 44 1 4.8705 -1.9561 0.3001 45 1 3.6304 -2.9438 1.1877 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:44 Heat of formation + Delta-G solvation = -107.700550 kcal Electronic energy + Delta-G solvation = -28450.291447 eV Core-core repulsion = 24142.770681 eV Total energy + Delta-G solvation = -4307.520766 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -41.71208 -41.12143 -39.74993 -38.74300 -38.03639 -37.19738 -37.07199 -34.87469 -32.48165 -31.92255 -31.27847 -30.53850 -29.09272 -26.97295 -26.79824 -24.44843 -23.67858 -22.80714 -21.71758 -20.57625 -19.97941 -19.34218 -18.58770 -17.88424 -17.67072 -17.54784 -17.40337 -17.22874 -17.12740 -16.94027 -16.68175 -16.12616 -15.89835 -15.73676 -15.29572 -15.21703 -14.96630 -14.68367 -14.44092 -14.34841 -14.27709 -14.15211 -13.97795 -13.75250 -13.52132 -13.20806 -13.12479 -13.03478 -12.95845 -12.65263 -12.57841 -12.35527 -12.17371 -12.06335 -11.93561 -11.65778 -11.57241 -11.25806 -10.95199 -10.48519 -10.25589 -9.92025 -9.27629 -5.02268 -1.14988 0.19306 0.39415 1.25718 1.40157 1.42196 1.61748 1.64833 1.98458 2.47900 2.51231 2.66393 2.83515 3.12874 3.17704 3.35630 3.40348 3.48695 3.53620 3.63295 3.67901 3.70324 3.73558 3.85499 3.87002 3.87919 4.00354 4.05016 4.17932 4.20079 4.36303 4.47045 4.51081 4.53692 4.53951 4.59454 4.64046 4.72226 4.86371 4.89808 4.96310 5.22365 5.34212 5.36273 5.43087 5.63718 6.18917 6.34433 6.59221 7.03030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.658 4.658 2 S 2.416 3.584 3 O -0.940 6.940 4 O -0.933 6.933 5 C -0.602 4.602 6 C -0.107 4.107 7 H 0.105 0.895 8 C -0.129 4.129 9 C 0.121 3.879 10 H 0.111 0.889 11 N -0.713 5.713 12 C 0.519 3.481 13 O -0.508 6.508 14 C 0.040 3.960 15 O -0.288 6.288 16 C 0.129 3.871 17 C -0.120 4.120 18 C -0.080 4.080 19 C -0.071 4.071 20 O -0.538 6.538 21 Si 0.694 3.306 22 C -0.154 4.154 23 C -0.072 4.072 24 C -0.206 4.206 25 C -0.152 4.152 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.103 0.897 32 H 0.081 0.919 33 H 0.404 0.596 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.136 0.864 37 H 0.116 0.884 38 H 0.379 0.621 39 H -0.255 1.255 40 H -0.258 1.258 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.130 0.870 44 H 0.084 0.916 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.037 5.863 4.917 8.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.598 3.402 3 O -0.937 6.937 4 O -0.931 6.931 5 C -0.731 4.731 6 C -0.126 4.126 7 H 0.123 0.877 8 C -0.168 4.168 9 C 0.015 3.985 10 H 0.129 0.871 11 N -0.367 5.367 12 C 0.304 3.696 13 O -0.381 6.381 14 C -0.038 4.038 15 O -0.200 6.200 16 C 0.084 3.916 17 C -0.139 4.139 18 C -0.080 4.080 19 C -0.182 4.182 20 O -0.343 6.343 21 Si 0.596 3.404 22 C -0.172 4.172 23 C -0.090 4.090 24 C -0.225 4.225 25 C -0.190 4.190 26 H 0.147 0.853 27 H 0.149 0.851 28 H 0.148 0.852 29 H 0.154 0.846 30 H 0.155 0.845 31 H 0.122 0.878 32 H 0.100 0.900 33 H 0.238 0.762 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.154 0.846 37 H 0.133 0.867 38 H 0.227 0.773 39 H -0.180 1.180 40 H -0.183 1.183 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.148 0.852 44 H 0.102 0.898 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.889 4.753 3.334 6.485 hybrid contribution -1.486 0.309 0.289 1.545 sum -4.375 5.062 3.623 7.609 Atomic orbital electron populations 1.30295 1.26762 1.11682 1.12031 1.07985 0.78388 0.75928 0.77870 1.93616 1.79099 1.34463 1.86522 1.93627 1.78847 1.66837 1.53747 1.30313 1.04968 1.14360 1.23428 1.22378 0.90803 0.99934 0.99525 0.87715 1.23345 0.97778 1.00238 0.95437 1.21834 0.82330 0.97350 0.96962 0.87070 1.45488 1.05709 1.10260 1.75205 1.20044 0.84460 0.88336 0.76758 1.90794 1.86499 1.13566 1.47205 1.22455 0.85237 0.92187 1.03959 1.86173 1.12559 1.33846 1.87464 1.19044 0.84386 0.91935 0.96266 1.20268 0.89321 1.00420 1.03895 1.20161 0.94777 0.94041 0.99050 1.25137 1.02901 0.98715 0.91398 1.86524 1.95763 1.35644 1.16389 0.94650 0.76460 0.81353 0.87909 1.20951 0.99037 0.92661 1.04556 1.20911 0.91491 1.00054 0.96586 1.21301 0.99104 0.93548 1.08550 1.23661 0.99126 0.97176 0.99073 0.85303 0.85091 0.85243 0.84557 0.84509 0.87833 0.90009 0.76171 0.88629 0.88588 0.84585 0.86662 0.77320 1.17969 1.18285 0.85343 0.85066 0.85219 0.89762 0.87994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.19 10.62 101.05 1.07 4.27 16 2 S 2.42 -5.38 5.35 -107.50 -0.58 -5.95 16 3 O -0.94 -1.67 18.10 -57.83 -1.05 -2.72 16 4 O -0.93 -1.83 18.10 -57.83 -1.05 -2.87 16 5 C -0.60 3.04 5.64 37.16 0.21 3.25 16 6 C -0.11 0.35 3.53 -89.81 -0.32 0.03 16 7 H 0.10 -0.37 8.13 -51.93 -0.42 -0.79 16 8 C -0.13 0.51 7.39 -25.92 -0.19 0.32 16 9 C 0.12 -0.19 4.32 -67.12 -0.29 -0.48 16 10 H 0.11 0.01 7.46 -51.93 -0.39 -0.38 16 11 N -0.71 1.32 5.26 -53.01 -0.28 1.04 16 12 C 0.52 0.71 7.91 -10.98 -0.09 0.62 16 13 O -0.51 -3.25 16.10 -14.35 -0.23 -3.48 16 14 C 0.04 -0.03 5.22 36.01 0.19 0.16 16 15 O -0.29 -0.92 9.67 -39.36 -0.38 -1.30 16 16 C 0.13 0.28 6.69 -39.22 -0.26 0.01 16 17 C -0.12 -0.31 9.55 -39.44 -0.38 -0.68 16 18 C -0.08 -0.08 5.39 -104.65 -0.56 -0.64 16 19 C -0.07 -0.03 2.82 36.01 0.10 0.07 16 20 O -0.54 -0.55 12.77 -35.23 -0.45 -1.00 16 21 Si 0.69 -0.57 29.79 -169.99 -5.06 -5.63 16 22 C -0.15 0.04 8.67 -39.56 -0.34 -0.30 16 23 C -0.07 0.05 10.04 -39.60 -0.40 -0.34 16 24 C -0.21 0.04 9.04 -39.43 -0.36 -0.31 16 25 C -0.15 0.24 7.43 -25.92 -0.19 0.04 16 26 H 0.13 -0.85 8.14 -51.92 -0.42 -1.27 16 27 H 0.13 -0.59 8.14 -51.92 -0.42 -1.01 16 28 H 0.13 -0.84 8.14 -51.92 -0.42 -1.26 16 29 H 0.14 -0.95 7.85 -51.93 -0.41 -1.36 16 30 H 0.14 -1.00 8.14 -51.92 -0.42 -1.42 16 31 H 0.10 -0.51 8.10 -51.93 -0.42 -0.93 16 32 H 0.08 -0.38 8.14 -51.93 -0.42 -0.81 16 33 H 0.40 -2.00 8.70 -40.82 -0.36 -2.35 16 34 H 0.10 -0.30 7.66 -51.93 -0.40 -0.70 16 35 H 0.10 -0.35 7.67 -51.93 -0.40 -0.75 16 36 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 37 H 0.12 0.12 7.96 -51.93 -0.41 -0.30 16 38 H 0.38 -1.13 8.70 45.56 0.40 -0.74 16 39 H -0.25 -0.62 7.11 56.52 0.40 -0.22 16 40 H -0.26 -0.36 7.11 56.52 0.40 0.04 16 41 H 0.13 -0.28 4.87 -52.49 -0.26 -0.53 16 42 H 0.13 -0.40 8.06 -52.49 -0.42 -0.83 16 43 H 0.13 -0.37 6.30 -52.49 -0.33 -0.70 16 44 H 0.08 0.00 8.14 -51.93 -0.42 -0.42 16 45 H 0.10 -0.25 7.90 -51.93 -0.41 -0.66 16 LS Contribution 389.87 15.07 5.88 5.88 Total: 0.00 -15.99 389.87 -11.38 -27.38 By element: Atomic # 1 Polarization: -10.96 SS G_CDS: -6.38 Total: -17.35 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.80 Total: 6.01 kcal Atomic # 7 Polarization: 1.32 SS G_CDS: -0.28 Total: 1.04 kcal Atomic # 8 Polarization: -8.22 SS G_CDS: -3.15 Total: -11.37 kcal Atomic # 14 Polarization: -0.57 SS G_CDS: -5.06 Total: -5.63 kcal Atomic # 16 Polarization: -5.38 SS G_CDS: -0.58 Total: -5.95 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -15.99 -11.38 -27.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.322 kcal (2) G-P(sol) polarization free energy of solvation -15.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds