Wall clock time and date at job start Tue Mar 9 2021 12:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42105 * 108.57791 * 2 1 4 4 O 1.42098 * 108.57693 * 228.97901 * 2 1 3 5 5 C 1.81397 * 101.92255 * 114.49049 * 2 1 3 6 6 C 1.53006 * 109.47077 * 180.02562 * 5 2 1 7 7 H 1.08999 * 112.84944 * 43.79743 * 6 5 2 8 8 C 1.53777 * 113.61288 * 174.99915 * 6 5 2 9 9 C 1.53781 * 87.08184 * 140.06125 * 8 6 5 10 10 H 1.08993 * 113.61848 * 219.93408 * 9 8 6 11 11 N 1.46506 * 113.61193 * 89.11272 * 9 8 6 12 12 C 1.34779 * 119.99461 * 155.00132 * 11 9 8 13 13 O 1.21275 * 120.00183 * 0.02562 * 12 11 9 14 14 C 1.50706 * 119.99413 * 180.02562 * 12 11 9 15 15 O 1.42900 * 109.46630 * 180.02562 * 14 12 11 16 16 C 1.35906 * 116.99895 * 180.02562 * 15 14 12 17 17 C 1.38711 * 120.05793 * 180.02562 * 16 15 14 18 18 C 1.38160 * 119.94449 * 180.02562 * 17 16 15 19 19 C 1.50702 * 119.97128 * 179.97438 * 18 17 16 20 20 O 1.42893 * 109.47232 * 300.00298 * 19 18 17 21 21 Si 1.86306 * 109.47121 * 180.02562 * 19 18 17 22 22 C 1.38244 * 120.05921 * 0.02562 * 18 17 16 23 23 C 1.38299 * 120.10751 * 0.02562 * 22 18 17 24 24 C 1.38125 * 120.05603 * 359.68510 * 23 22 18 25 25 C 1.53779 * 113.68766 * 272.53367 * 6 5 2 26 26 H 1.09000 * 109.46754 * 305.51150 * 1 2 3 27 27 H 1.09004 * 109.47081 * 65.50960 * 1 2 3 28 28 H 1.09002 * 109.47087 * 185.50822 * 1 2 3 29 29 H 1.08992 * 109.47154 * 60.00160 * 5 2 1 30 30 H 1.09004 * 109.47011 * 299.99577 * 5 2 1 31 31 H 1.09005 * 113.61435 * 25.51551 * 8 6 5 32 32 H 1.08996 * 113.69073 * 254.62041 * 8 6 5 33 33 H 0.96995 * 119.99814 * 335.00080 * 11 9 8 34 34 H 1.08994 * 109.46865 * 299.99905 * 14 12 11 35 35 H 1.08994 * 109.47394 * 60.00070 * 14 12 11 36 36 H 1.08002 * 120.02436 * 359.97438 * 17 16 15 37 37 H 1.09000 * 109.46708 * 60.00162 * 19 18 17 38 38 H 0.96709 * 113.99827 * 299.99657 * 20 19 18 39 39 H 1.48495 * 110.00042 * 180.02562 * 21 19 18 40 40 H 1.48498 * 109.99776 * 301.32247 * 21 19 18 41 41 H 1.07995 * 119.94953 * 180.02562 * 22 18 17 42 42 H 1.07998 * 119.96866 * 179.97438 * 23 22 18 43 43 H 1.08001 * 120.02957 * 180.31721 * 24 23 22 44 44 H 1.09003 * 113.61721 * 105.45755 * 25 6 5 45 45 H 1.09001 * 113.61225 * 334.55796 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3470 0.0000 4 8 2.2667 -0.8840 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7056 -0.8185 1.7983 7 1 4.2201 0.0893 1.4832 8 6 4.1317 -1.3170 3.1892 9 6 5.2305 -2.1234 2.4769 10 1 5.3821 -3.1186 2.8947 11 7 6.4825 -1.3827 2.3028 12 6 7.6477 -2.0486 2.1787 13 8 7.6597 -3.2609 2.2106 14 6 8.9356 -1.2866 2.0002 15 8 10.0228 -2.2077 1.8919 16 6 11.2642 -1.6801 1.7260 17 6 12.3652 -2.5163 1.6133 18 6 13.6262 -1.9775 1.4453 19 6 14.8228 -2.8854 1.3233 20 8 14.9409 -3.6792 2.5056 21 14 16.3624 -1.8584 1.1092 22 6 13.7914 -0.6060 1.3899 23 6 12.6955 0.2299 1.5031 24 6 11.4320 -0.3040 1.6653 25 6 4.3268 -2.1065 1.2328 26 1 -0.3633 0.5969 0.8365 27 1 -0.3633 0.4260 -0.9352 28 1 -0.3633 -1.0229 0.0986 29 1 1.7611 -1.7370 1.6663 30 1 1.7611 -0.1171 2.4042 31 1 3.3820 -1.9386 3.6789 32 1 4.5180 -0.5302 3.8371 33 1 6.4728 -0.4131 2.2770 34 1 8.8786 -0.6842 1.0936 35 1 9.0947 -0.6355 2.8597 36 1 12.2367 -3.5878 1.6577 37 1 14.6974 -3.5375 0.4589 38 1 15.0554 -3.1635 3.3157 39 1 17.5495 -2.7421 0.9871 40 1 16.2391 -1.0043 -0.0994 41 1 14.7779 -0.1867 1.2581 42 1 12.8272 1.3009 1.4600 43 1 10.5758 0.3490 1.7485 44 1 4.8705 -1.9561 0.3001 45 1 3.6304 -2.9438 1.1877 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_4860298.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:54:43 Heat of formation + Delta-G solvation = -117.444820 kcal Electronic energy + Delta-G solvation = -28450.713991 eV Core-core repulsion = 24142.770681 eV Total energy + Delta-G solvation = -4307.943309 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 356.122 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.71827 -41.07865 -39.73233 -38.81198 -37.97439 -37.23805 -37.00775 -34.88201 -32.47807 -31.85668 -31.09152 -30.22324 -29.01383 -26.82521 -26.75666 -24.27866 -23.68192 -22.79656 -21.72113 -20.42946 -19.81079 -19.34930 -18.59752 -17.73327 -17.65233 -17.52028 -17.37949 -17.11114 -17.00783 -16.88111 -16.61576 -16.18678 -15.80837 -15.68733 -15.27929 -15.16280 -14.89619 -14.67980 -14.20889 -14.15109 -14.04452 -14.01284 -13.91899 -13.57532 -13.42243 -13.14141 -13.01754 -12.94260 -12.92177 -12.63387 -12.41032 -12.21300 -12.13927 -12.00511 -11.87283 -11.68723 -11.35061 -11.10901 -11.00260 -10.51790 -10.22669 -9.93281 -9.30469 -4.99324 -0.90657 0.19206 0.37387 1.26938 1.34802 1.44386 1.64986 1.90677 1.96802 2.53781 2.66141 2.74910 3.11149 3.36167 3.43210 3.44764 3.51699 3.63642 3.66179 3.74565 3.82727 3.97203 4.04023 4.08034 4.09600 4.11224 4.20215 4.23379 4.34246 4.39088 4.48326 4.50478 4.61442 4.73338 4.79289 4.81613 4.95676 4.96733 4.98376 5.00247 5.11187 5.22952 5.35568 5.43352 5.48826 5.68034 6.23287 6.40250 6.74139 7.04747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.646 4.646 2 S 2.407 3.593 3 O -0.990 6.990 4 O -0.990 6.990 5 C -0.584 4.584 6 C -0.111 4.111 7 H 0.105 0.895 8 C -0.110 4.110 9 C 0.107 3.893 10 H 0.089 0.911 11 N -0.696 5.696 12 C 0.514 3.486 13 O -0.571 6.571 14 C 0.037 3.963 15 O -0.323 6.323 16 C 0.113 3.887 17 C -0.150 4.150 18 C -0.084 4.084 19 C -0.087 4.087 20 O -0.558 6.558 21 Si 0.798 3.202 22 C -0.157 4.157 23 C -0.070 4.070 24 C -0.203 4.203 25 C -0.162 4.162 26 H 0.154 0.846 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.163 0.837 30 H 0.172 0.828 31 H 0.120 0.880 32 H 0.097 0.903 33 H 0.421 0.579 34 H 0.122 0.878 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.396 0.604 39 H -0.301 1.301 40 H -0.280 1.280 41 H 0.150 0.850 42 H 0.164 0.836 43 H 0.160 0.840 44 H 0.059 0.941 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.341 8.546 6.553 12.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.798 4.798 2 S 2.596 3.404 3 O -0.988 6.988 4 O -0.987 6.987 5 C -0.715 4.715 6 C -0.130 4.130 7 H 0.123 0.877 8 C -0.149 4.149 9 C 0.001 3.999 10 H 0.107 0.893 11 N -0.350 5.350 12 C 0.301 3.699 13 O -0.449 6.449 14 C -0.040 4.040 15 O -0.237 6.237 16 C 0.068 3.932 17 C -0.169 4.169 18 C -0.085 4.085 19 C -0.195 4.195 20 O -0.366 6.366 21 Si 0.703 3.297 22 C -0.175 4.175 23 C -0.087 4.087 24 C -0.221 4.221 25 C -0.200 4.200 26 H 0.172 0.828 27 H 0.145 0.855 28 H 0.170 0.830 29 H 0.181 0.819 30 H 0.190 0.810 31 H 0.138 0.862 32 H 0.115 0.885 33 H 0.259 0.741 34 H 0.140 0.860 35 H 0.148 0.852 36 H 0.129 0.871 37 H 0.118 0.882 38 H 0.246 0.754 39 H -0.229 1.229 40 H -0.207 1.207 41 H 0.167 0.833 42 H 0.181 0.819 43 H 0.178 0.822 44 H 0.078 0.922 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -4.222 7.505 4.960 9.937 hybrid contribution -1.159 -0.588 -0.202 1.315 sum -5.381 6.917 4.758 9.972 Atomic orbital electron populations 1.30158 1.22909 1.13727 1.13025 1.07819 0.79626 0.74447 0.78530 1.93549 1.80856 1.36787 1.87578 1.93560 1.80707 1.67498 1.56915 1.30173 1.03933 1.16180 1.21219 1.22417 0.92083 0.98828 0.99681 0.87723 1.23310 0.96544 1.00054 0.94956 1.21951 0.82956 0.97214 0.97746 0.89327 1.45398 1.04955 1.11113 1.73485 1.20577 0.85891 0.87782 0.75678 1.90762 1.87444 1.16228 1.50461 1.22728 0.83050 0.91641 1.06611 1.86123 1.13656 1.36018 1.87881 1.19211 0.83807 0.93073 0.97142 1.20282 0.90810 0.99584 1.06195 1.20215 0.94059 0.94927 0.99274 1.25445 1.04346 0.98884 0.90872 1.86476 1.95861 1.36878 1.17396 0.93507 0.72070 0.78543 0.85626 1.21227 1.00458 0.91932 1.03841 1.21345 0.90839 1.01597 0.94952 1.21637 1.00613 0.92574 1.07315 1.23732 0.99499 0.98859 0.97928 0.82775 0.85516 0.83026 0.81929 0.81020 0.86151 0.88492 0.74122 0.86015 0.85226 0.87110 0.88224 0.75441 1.22939 1.20701 0.83279 0.81885 0.82242 0.92223 0.87387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.35 10.62 113.37 1.20 8.55 16 2 S 2.41 -10.26 5.35 -56.49 -0.30 -10.56 16 3 O -0.99 -4.49 18.10 -127.37 -2.31 -6.79 16 4 O -0.99 -5.68 18.10 -127.37 -2.30 -7.99 16 5 C -0.58 7.10 5.64 71.98 0.41 7.51 16 6 C -0.11 0.82 3.53 -10.27 -0.04 0.79 16 7 H 0.10 -0.77 8.13 -2.39 -0.02 -0.79 16 8 C -0.11 1.06 7.39 31.12 0.23 1.29 16 9 C 0.11 -0.25 4.32 45.52 0.20 -0.06 16 10 H 0.09 0.21 7.46 -2.39 -0.02 0.19 16 11 N -0.70 2.18 5.26 -440.03 -2.32 -0.13 16 12 C 0.51 2.22 7.91 87.66 0.69 2.92 16 13 O -0.57 -9.24 16.10 16.02 0.26 -8.98 16 14 C 0.04 -0.05 5.22 71.24 0.37 0.32 16 15 O -0.32 -2.70 9.67 -73.46 -0.71 -3.41 16 16 C 0.11 0.62 6.69 22.51 0.15 0.77 16 17 C -0.15 -1.15 9.55 22.36 0.21 -0.94 16 18 C -0.08 -0.26 5.39 -19.88 -0.11 -0.37 16 19 C -0.09 -0.22 2.82 71.24 0.20 -0.02 16 20 O -0.56 -2.14 12.77 -148.98 -1.90 -4.04 16 21 Si 0.80 -1.26 29.79 68.60 2.04 0.78 16 22 C -0.16 0.24 8.67 22.29 0.19 0.43 16 23 C -0.07 0.25 10.04 22.26 0.22 0.47 16 24 C -0.20 0.34 9.04 22.37 0.20 0.54 16 25 C -0.16 0.33 7.43 31.12 0.23 0.56 16 26 H 0.15 -2.49 8.14 -2.39 -0.02 -2.51 16 27 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 28 H 0.15 -2.35 8.14 -2.39 -0.02 -2.37 16 29 H 0.16 -2.75 7.85 -2.39 -0.02 -2.77 16 30 H 0.17 -3.19 8.14 -2.39 -0.02 -3.21 16 31 H 0.12 -1.51 8.10 -2.38 -0.02 -1.53 16 32 H 0.10 -1.17 8.14 -2.39 -0.02 -1.19 16 33 H 0.42 -4.43 8.70 -92.71 -0.81 -5.24 16 34 H 0.12 -0.87 7.66 -2.39 -0.02 -0.89 16 35 H 0.13 -1.13 7.67 -2.39 -0.02 -1.15 16 36 H 0.11 1.26 8.06 -2.91 -0.02 1.24 16 37 H 0.10 0.48 7.96 -2.39 -0.02 0.46 16 38 H 0.40 -1.94 8.70 -74.05 -0.64 -2.58 16 39 H -0.30 -1.83 7.11 99.48 0.71 -1.13 16 40 H -0.28 -0.60 7.11 99.48 0.71 0.11 16 41 H 0.15 -0.93 4.87 -2.91 -0.01 -0.94 16 42 H 0.16 -1.62 8.06 -2.91 -0.02 -1.64 16 43 H 0.16 -1.36 6.30 -2.91 -0.02 -1.38 16 44 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 45 H 0.11 -0.42 7.90 -2.39 -0.02 -0.44 16 Total: 0.00 -43.69 389.87 -3.55 -47.24 By element: Atomic # 1 Polarization: -28.48 SS G_CDS: -0.38 Total: -28.86 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 4.37 Total: 22.76 kcal Atomic # 7 Polarization: 2.18 SS G_CDS: -2.32 Total: -0.13 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -6.96 Total: -31.22 kcal Atomic # 14 Polarization: -1.26 SS G_CDS: 2.04 Total: 0.78 kcal Atomic # 16 Polarization: -10.26 SS G_CDS: -0.30 Total: -10.56 kcal Total: -43.69 -3.55 -47.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_4860298.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.207 kcal (2) G-P(sol) polarization free energy of solvation -43.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds