Wall clock time and date at job start Tue Mar 9 2021 12:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35959 * 117.00006 * 2 1 4 4 C 1.39453 * 120.12105 * 179.97438 * 3 2 1 5 5 O 1.34766 * 133.23940 * 0.02562 * 4 3 2 6 6 C 1.34932 * 110.84040 * 180.02562 * 5 4 3 7 7 C 1.46990 * 125.13819 * 180.02562 * 6 5 4 8 8 O 1.21659 * 119.99954 * 179.97438 * 7 6 5 9 9 N 1.34773 * 120.00409 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00578 * 180.02562 * 9 7 6 11 11 H 1.08998 * 112.84308 * 336.19442 * 10 9 7 12 12 C 1.53776 * 113.61499 * 107.50067 * 10 9 7 13 13 C 1.53777 * 87.08458 * 89.11968 * 12 10 9 14 14 H 1.08995 * 113.69052 * 270.87527 * 13 12 10 15 15 C 1.52999 * 113.61956 * 139.97711 * 13 12 10 16 16 S 1.81403 * 109.46912 * 87.50077 * 15 13 12 17 17 C 1.81401 * 101.91942 * 180.02562 * 16 15 13 18 18 O 1.42101 * 108.58109 * 294.49158 * 16 15 13 19 19 O 1.42103 * 108.57608 * 65.51562 * 16 15 13 20 20 C 1.53784 * 113.61750 * 205.00094 * 10 9 7 21 21 C 1.35805 * 109.72057 * 359.97438 * 6 5 4 22 22 C 1.40609 * 119.13455 * 180.02562 * 4 3 2 23 23 C 1.39770 * 120.12172 * 359.75143 * 22 4 3 24 24 C 1.50706 * 120.09530 * 180.27049 * 23 22 4 25 25 O 1.42897 * 109.47206 * 285.23014 * 24 23 22 26 26 Si 1.86299 * 109.47241 * 165.22644 * 24 23 22 27 27 C 1.36627 * 119.81585 * 0.50434 * 23 22 4 28 28 C 1.38262 * 120.12296 * 359.97438 * 3 2 1 29 29 H 1.09004 * 109.46648 * 300.00177 * 1 2 3 30 30 H 1.09002 * 109.47406 * 59.99900 * 1 2 3 31 31 H 1.09000 * 109.47239 * 180.02562 * 1 2 3 32 32 H 0.97007 * 119.99802 * 359.97438 * 9 7 6 33 33 H 1.09002 * 113.61276 * 203.66640 * 12 10 9 34 34 H 1.08999 * 113.61925 * 334.56449 * 12 10 9 35 35 H 1.08997 * 109.47178 * 207.50455 * 15 13 12 36 36 H 1.09002 * 109.46826 * 327.50735 * 15 13 12 37 37 H 1.08990 * 109.46987 * 60.00679 * 17 16 15 38 38 H 1.09001 * 109.46430 * 180.02562 * 17 16 15 39 39 H 1.08995 * 109.47023 * 300.00189 * 17 16 15 40 40 H 1.09004 * 113.61071 * 25.42570 * 20 10 9 41 41 H 1.08997 * 113.61550 * 156.24821 * 20 10 9 42 42 H 1.07999 * 126.95812 * 179.97438 * 21 6 5 43 43 H 1.08998 * 109.46756 * 45.22892 * 24 23 22 44 44 H 0.96699 * 113.99870 * 299.99618 * 25 24 23 45 45 H 1.48508 * 109.99841 * 58.68488 * 26 24 23 46 46 H 1.48494 * 110.00019 * 180.02562 * 26 24 23 47 47 H 1.08002 * 119.75872 * 179.77657 * 27 23 22 48 48 H 1.08002 * 119.65752 * 359.96391 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2114 0.0000 4 6 3.4388 1.2873 0.0005 5 8 4.4141 0.3573 0.0007 6 6 5.6317 0.9386 0.0018 7 6 6.9131 0.2183 0.0018 8 8 7.9596 0.8387 0.0024 9 7 6.9286 -1.1293 0.0010 10 6 8.2057 -1.8472 0.0015 11 1 9.0252 -1.2532 -0.4030 12 6 8.5341 -2.5192 1.3451 13 6 7.7798 -3.7533 0.8227 14 1 6.7131 -3.7417 1.0463 15 6 8.4487 -5.0802 1.1869 16 16 7.8616 -5.6268 2.8139 17 6 8.7671 -7.1829 3.0357 18 8 8.3103 -4.6991 3.7923 19 8 6.4742 -5.9192 2.7198 20 6 8.1174 -3.2620 -0.5949 21 6 5.4945 2.2897 0.0019 22 6 4.0554 2.5510 0.0011 23 6 3.2766 3.7115 -0.0042 24 6 3.9382 5.0656 -0.0098 25 8 4.4649 5.3438 1.2892 26 14 2.6851 6.3673 -0.4637 27 6 1.9137 3.6151 0.0006 28 6 1.2958 2.3726 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 6.0942 -1.6240 0.0009 33 1 9.5994 -2.6913 1.4984 34 1 8.0539 -2.0435 2.2002 35 1 8.1969 -5.8315 0.4385 36 1 9.5300 -4.9457 1.2172 37 1 9.8388 -6.9862 3.0118 38 1 8.4998 -7.6251 3.9954 39 1 8.5063 -7.8726 2.2330 40 1 7.3006 -3.3858 -1.3060 41 1 9.0685 -3.6365 -0.9733 42 1 6.2875 3.0229 0.0031 43 1 4.7482 5.0711 -0.7391 44 1 3.7984 5.3548 1.9897 45 1 1.5596 6.3485 0.5051 46 1 3.3252 7.7071 -0.4733 47 1 1.3128 4.5125 0.0002 48 1 0.2174 2.3119 -0.0015 There are 70 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 70 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_6672420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:23 Heat of formation + Delta-G solvation = -106.801051 kcal Electronic energy + Delta-G solvation = -34742.566167 eV Core-core repulsion = 29859.949933 eV Total energy + Delta-G solvation = -4882.616234 eV No. of doubly occupied orbitals = 70 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 396.121 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.80841 -41.47832 -40.65129 -39.57889 -39.14923 -37.99022 -37.13735 -37.02026 -34.98598 -33.70291 -32.01647 -31.41934 -30.75366 -30.10655 -28.55016 -26.78647 -26.39355 -25.60676 -24.04742 -23.83063 -22.20399 -21.83009 -20.47184 -20.01572 -19.74863 -19.09792 -18.59345 -17.91016 -17.81111 -17.71122 -17.36715 -17.05225 -17.02017 -16.92336 -16.62753 -16.23099 -16.08724 -15.97327 -15.85389 -15.31761 -15.24398 -14.72795 -14.60317 -14.57325 -14.26161 -14.15711 -14.02030 -13.92395 -13.52988 -13.50983 -13.44307 -13.28767 -13.16121 -13.03575 -12.96024 -12.49489 -12.44094 -12.28897 -12.27904 -12.14116 -11.90578 -11.67453 -11.66928 -11.38587 -11.07015 -11.03884 -10.62227 -10.37367 -9.87420 -9.04525 -4.89487 -0.92077 -0.72358 0.06269 0.56251 1.12557 1.29496 1.59308 1.79568 1.82802 1.89917 1.97547 2.11021 2.35967 2.73955 3.09601 3.11568 3.32135 3.36222 3.41135 3.52435 3.59944 3.62873 3.69945 3.77763 3.83779 3.93904 4.05880 4.08328 4.13600 4.19024 4.30475 4.36929 4.40368 4.41229 4.46122 4.48647 4.68512 4.74327 4.75277 4.78603 4.80131 4.83684 4.90425 4.97148 4.97482 5.01487 5.04349 5.18229 5.28697 5.41494 5.55260 6.12118 6.24753 6.48619 6.73618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.334 6.334 3 C 0.137 3.863 4 C 0.020 3.980 5 O -0.182 6.182 6 C -0.037 4.037 7 C 0.605 3.395 8 O -0.541 6.541 9 N -0.691 5.691 10 C 0.104 3.896 11 H 0.105 0.895 12 C -0.158 4.158 13 C -0.116 4.116 14 H 0.094 0.906 15 C -0.581 4.581 16 S 2.402 3.598 17 C -0.643 4.643 18 O -0.989 6.989 19 O -0.994 6.994 20 C -0.110 4.110 21 C -0.109 4.109 22 C -0.096 4.096 23 C -0.099 4.099 24 C -0.091 4.091 25 O -0.548 6.548 26 Si 0.784 3.216 27 C -0.088 4.088 28 C -0.164 4.164 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.416 0.584 33 H 0.119 0.881 34 H 0.056 0.944 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.154 0.846 38 H 0.127 0.873 39 H 0.154 0.846 40 H 0.089 0.911 41 H 0.131 0.869 42 H 0.173 0.827 43 H 0.115 0.885 44 H 0.386 0.614 45 H -0.262 1.262 46 H -0.304 1.304 47 H 0.167 0.833 48 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.595 -4.793 -6.004 8.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.248 6.248 3 C 0.091 3.909 4 C -0.028 4.028 5 O -0.085 6.085 6 C -0.087 4.087 7 C 0.391 3.609 8 O -0.420 6.420 9 N -0.341 5.341 10 C -0.001 4.001 11 H 0.123 0.877 12 C -0.197 4.197 13 C -0.135 4.135 14 H 0.112 0.888 15 C -0.712 4.712 16 S 2.592 3.408 17 C -0.795 4.795 18 O -0.986 6.986 19 O -0.992 6.992 20 C -0.148 4.148 21 C -0.130 4.130 22 C -0.097 4.097 23 C -0.100 4.100 24 C -0.198 4.198 25 O -0.356 6.356 26 Si 0.687 3.313 27 C -0.106 4.106 28 C -0.183 4.183 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.133 0.867 32 H 0.253 0.747 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.189 0.811 36 H 0.186 0.814 37 H 0.172 0.828 38 H 0.145 0.855 39 H 0.172 0.828 40 H 0.108 0.892 41 H 0.149 0.851 42 H 0.191 0.809 43 H 0.133 0.867 44 H 0.236 0.764 45 H -0.188 1.188 46 H -0.233 1.233 47 H 0.184 0.816 48 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -3.298 -3.759 -5.471 7.412 hybrid contribution 0.279 -0.658 1.147 1.351 sum -3.019 -4.417 -4.324 6.879 Atomic orbital electron populations 1.23493 0.75273 1.06013 1.03209 1.86150 1.24368 1.25867 1.88429 1.18002 0.86086 0.86892 0.99957 1.19245 0.88274 0.87143 1.08119 1.84011 1.12754 1.35152 1.76549 1.21926 0.83996 0.92803 1.09944 1.16660 0.85084 0.82698 0.76482 1.90888 1.31300 1.68170 1.51692 1.45598 1.10827 1.04931 1.72775 1.22131 0.85759 0.93987 0.98213 0.87655 1.23743 1.02925 0.95995 0.96988 1.22411 0.99826 0.91705 0.99571 0.88809 1.30154 1.13433 1.06884 1.20775 1.07916 0.75897 0.78367 0.78635 1.30130 1.16208 1.20074 1.13086 1.93557 1.83318 1.62516 1.59252 1.93549 1.32430 1.85681 1.87511 1.23339 1.05405 0.91273 0.94830 1.22863 0.95460 0.94319 1.00367 1.19576 0.92280 0.92797 1.05058 1.19564 0.93477 0.93866 1.03098 1.25419 1.07782 0.98601 0.88003 1.86607 1.38988 1.92718 1.17331 0.93878 0.75356 0.73395 0.88645 1.20898 0.92908 0.98833 0.97925 1.21384 1.01829 0.89542 1.05517 0.90868 0.90286 0.86710 0.74742 0.86234 0.92467 0.81066 0.81352 0.82761 0.85470 0.82758 0.89220 0.85102 0.80950 0.86664 0.76449 1.18815 1.23265 0.81623 0.80216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.33 -1.28 10.50 -93.08 -0.98 -2.25 16 3 C 0.14 0.57 6.70 22.57 0.15 0.73 16 4 C 0.02 0.18 7.35 23.14 0.17 0.35 16 5 O -0.18 -1.83 10.28 -13.35 -0.14 -1.97 16 6 C -0.04 -0.36 7.07 24.00 0.17 -0.19 16 7 C 0.60 5.95 7.80 86.54 0.67 6.62 16 8 O -0.54 -8.34 16.43 -4.22 -0.07 -8.41 16 9 N -0.69 -2.55 5.26 -443.71 -2.33 -4.89 16 10 C 0.10 0.01 4.32 45.52 0.20 0.21 16 11 H 0.11 0.21 7.46 -2.39 -0.02 0.19 16 12 C -0.16 0.01 7.43 31.12 0.23 0.24 16 13 C -0.12 0.48 3.53 -10.27 -0.04 0.44 16 14 H 0.09 -0.17 8.13 -2.39 -0.02 -0.19 16 15 C -0.58 5.94 5.64 71.98 0.41 6.34 16 16 S 2.40 -5.09 5.35 -56.49 -0.30 -5.39 16 17 C -0.64 6.57 10.62 113.37 1.20 7.78 16 18 O -0.99 -7.54 18.10 -127.37 -2.30 -9.84 16 19 O -0.99 -7.51 18.10 -127.37 -2.31 -9.82 16 20 C -0.11 0.76 7.39 31.12 0.23 0.99 16 21 C -0.11 -1.03 10.68 23.79 0.25 -0.77 16 22 C -0.10 -0.71 6.16 -20.24 -0.12 -0.83 16 23 C -0.10 -0.20 5.26 -19.87 -0.10 -0.31 16 24 C -0.09 -0.08 2.70 71.24 0.19 0.12 16 25 O -0.55 -2.45 12.88 -148.98 -1.92 -4.37 16 26 Si 0.78 -2.69 30.25 68.60 2.08 -0.62 16 27 C -0.09 0.22 8.62 22.02 0.19 0.41 16 28 C -0.16 0.38 9.03 22.40 0.20 0.58 16 29 H 0.07 -0.63 7.66 -2.38 -0.02 -0.64 16 30 H 0.08 -0.75 7.66 -2.39 -0.02 -0.77 16 31 H 0.11 -0.92 8.14 -2.39 -0.02 -0.94 16 32 H 0.42 0.36 8.42 -92.70 -0.78 -0.42 16 33 H 0.12 -0.46 7.90 -2.39 -0.02 -0.48 16 34 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 35 H 0.17 -2.84 8.14 -2.39 -0.02 -2.86 16 36 H 0.17 -2.73 7.84 -2.39 -0.02 -2.75 16 37 H 0.15 -2.30 8.14 -2.40 -0.02 -2.32 16 38 H 0.13 -1.09 8.14 -2.39 -0.02 -1.11 16 39 H 0.15 -2.32 8.14 -2.39 -0.02 -2.34 16 40 H 0.09 -0.69 8.14 -2.38 -0.02 -0.71 16 41 H 0.13 -1.52 8.10 -2.39 -0.02 -1.54 16 42 H 0.17 1.48 8.06 -2.91 -0.02 1.45 16 43 H 0.12 0.10 7.96 -2.39 -0.02 0.08 16 44 H 0.39 -0.73 8.70 -74.06 -0.64 -1.38 16 45 H -0.26 0.68 6.69 99.48 0.67 1.35 16 46 H -0.30 -1.51 7.11 99.48 0.71 -0.80 16 47 H 0.17 -1.32 4.81 -2.91 -0.01 -1.33 16 48 H 0.18 -1.69 6.26 -2.91 -0.02 -1.71 16 Total: 0.00 -39.21 417.00 -3.55 -42.75 By element: Atomic # 1 Polarization: -18.53 SS G_CDS: -0.39 Total: -18.92 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 5.12 Total: 23.73 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -2.33 Total: -4.89 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -7.71 Total: -36.67 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.08 Total: -0.62 kcal Atomic # 16 Polarization: -5.09 SS G_CDS: -0.30 Total: -5.39 kcal Total: -39.21 -3.55 -42.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_6672420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.046 kcal (2) G-P(sol) polarization free energy of solvation -39.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds