Wall clock time and date at job start Tue Mar 9 2021 12:55:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33818 * 122.45227 * 2 1 4 4 C 1.50696 * 124.51851 * 359.97438 * 3 2 1 5 5 O 1.42893 * 109.47573 * 329.99412 * 4 3 2 6 6 Si 1.86308 * 109.46832 * 209.99658 * 4 3 2 7 7 S 1.70609 * 110.95496 * 180.02562 * 3 2 1 8 8 C 1.75833 * 91.56432 * 0.02562 * 7 3 2 9 9 C 1.46588 * 125.45856 * 179.97438 * 8 7 3 10 10 O 1.21703 * 119.99931 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99989 * 359.75364 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27576 * 11 9 8 13 13 H 1.08998 * 112.84625 * 23.79619 * 12 11 9 14 14 C 1.53781 * 113.61598 * 154.99527 * 12 11 9 15 15 C 1.53781 * 87.07867 * 89.11692 * 14 12 11 16 16 H 1.09008 * 113.61540 * 270.80033 * 15 14 12 17 17 C 1.53000 * 113.61653 * 139.98158 * 15 14 12 18 18 S 1.81403 * 109.47485 * 174.99814 * 17 15 14 19 19 C 1.81399 * 101.92042 * 179.97438 * 18 17 15 20 20 O 1.42102 * 108.57544 * 294.48759 * 18 17 15 21 21 O 1.42105 * 108.57301 * 65.50961 * 18 17 15 22 22 C 1.53779 * 87.08432 * 25.43214 * 15 14 12 23 23 C 1.36647 * 109.08400 * 0.26372 * 8 7 3 24 24 H 1.08999 * 109.47461 * 89.99134 * 1 2 3 25 25 H 1.08997 * 109.47138 * 209.99961 * 1 2 3 26 26 H 1.09000 * 109.46750 * 329.99602 * 1 2 3 27 27 H 1.09002 * 109.47348 * 89.99823 * 4 3 2 28 28 H 0.96706 * 114.00321 * 300.00686 * 5 4 3 29 29 H 1.48504 * 109.99811 * 58.68183 * 6 4 3 30 30 H 1.48501 * 109.99803 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99736 * 0.26848 * 11 9 8 32 32 H 1.08999 * 113.61022 * 203.66432 * 14 12 11 33 33 H 1.08989 * 113.61263 * 334.56832 * 14 12 11 34 34 H 1.09005 * 109.46622 * 295.00166 * 17 15 14 35 35 H 1.09001 * 109.47148 * 54.99440 * 17 15 14 36 36 H 1.08997 * 109.47093 * 60.00276 * 19 18 17 37 37 H 1.09004 * 109.46344 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.46935 * 299.99965 * 19 18 17 39 39 H 1.09007 * 113.61621 * 220.02432 * 22 15 14 40 40 H 1.08999 * 113.61644 * 89.11386 * 22 15 14 41 41 H 1.07994 * 123.35193 * 179.71400 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.3758 2.4980 -0.6747 6 14 2.7930 3.6824 -0.8786 7 16 3.8969 0.7892 -0.0007 8 6 3.5936 -0.9428 -0.0018 9 6 4.6231 -1.9864 -0.0033 10 8 4.3000 -3.1598 -0.0045 11 7 5.9272 -1.6465 -0.0091 12 6 6.9561 -2.6894 -0.0167 13 1 6.5969 -3.6352 -0.4225 14 6 8.2948 -2.2298 -0.6179 15 6 8.6865 -1.7792 0.7993 16 1 8.3954 -0.7538 1.0276 17 6 10.1444 -2.0762 1.1559 18 16 10.5247 -1.3710 2.7834 19 6 12.2653 -1.8355 2.9956 20 8 10.4410 0.0448 2.6940 21 8 9.7523 -2.0512 3.7632 22 6 7.6971 -2.8335 1.3231 23 6 2.2446 -1.1601 -0.0075 24 1 -0.3634 0.0002 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.4930 2.8507 1.0270 28 1 0.4269 2.2093 -1.5963 29 1 3.0207 3.2195 -2.2711 30 1 2.2234 5.0538 -0.8855 31 1 6.1847 -0.7113 -0.0082 32 1 8.9053 -3.0477 -1.0004 33 1 8.1958 -1.4071 -1.3259 34 1 10.2994 -3.1549 1.1820 35 1 10.7994 -1.6331 0.4058 36 1 12.8583 -1.3997 2.1915 37 1 12.6260 -1.4642 3.9548 38 1 12.3576 -2.9212 2.9678 39 1 7.1156 -2.4981 2.1819 40 1 8.1443 -3.8165 1.4712 41 1 1.8019 -2.1452 -0.0138 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534690_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:30 Heat of formation + Delta-G solvation = -74.628992 kcal Electronic energy + Delta-G solvation = -25632.650421 eV Core-core repulsion = 21734.398184 eV Total energy + Delta-G solvation = -3898.252237 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.079 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -41.43277 -40.22819 -39.31589 -37.98331 -37.43384 -37.01810 -34.78993 -32.27983 -31.18687 -30.40990 -30.26007 -26.91707 -26.69376 -24.80921 -23.86907 -22.00179 -20.61324 -20.10874 -19.93603 -19.45118 -17.86386 -17.82514 -17.44440 -17.22717 -17.08141 -16.87982 -16.55514 -16.10751 -16.08396 -15.60809 -15.34464 -15.06883 -14.58046 -14.49626 -14.38069 -14.30470 -14.21837 -13.91702 -13.67024 -13.52659 -13.22015 -13.11982 -13.07912 -12.99089 -12.97141 -12.57895 -12.42388 -12.28355 -12.24178 -12.01505 -11.86447 -11.51458 -11.20491 -11.10887 -10.91480 -10.21336 -9.68421 -9.42098 -5.21172 -1.10026 -0.62179 0.29326 0.70689 1.03713 1.33363 1.47274 1.66783 1.81017 1.94318 2.16303 2.55164 2.88533 3.11228 3.18428 3.23273 3.42228 3.50865 3.57730 3.71509 3.72224 3.76583 3.91083 4.09691 4.11078 4.24993 4.26966 4.43239 4.52464 4.55957 4.56963 4.57362 4.67259 4.76475 4.77840 4.86608 4.93170 4.96276 5.02923 5.37961 5.43316 5.43967 6.18137 6.32429 7.08265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.096 4.096 3 C -0.235 4.235 4 C -0.033 4.033 5 O -0.517 6.517 6 Si 0.663 3.337 7 S 0.202 5.798 8 C -0.263 4.263 9 C 0.597 3.403 10 O -0.522 6.522 11 N -0.712 5.712 12 C 0.120 3.880 13 H 0.112 0.888 14 C -0.130 4.130 15 C -0.107 4.107 16 H 0.105 0.895 17 C -0.602 4.602 18 S 2.418 3.582 19 C -0.659 4.659 20 O -0.939 6.939 21 O -0.933 6.933 22 C -0.151 4.151 23 C -0.046 4.046 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.129 0.871 28 H 0.378 0.622 29 H -0.247 1.247 30 H -0.237 1.237 31 H 0.400 0.600 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.102 0.898 41 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.371 0.980 -2.593 6.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.354 4.354 4 C -0.144 4.144 5 O -0.324 6.324 6 Si 0.560 3.440 7 S 0.470 5.530 8 C -0.383 4.383 9 C 0.383 3.617 10 O -0.399 6.399 11 N -0.363 5.363 12 C 0.015 3.985 13 H 0.130 0.870 14 C -0.169 4.169 15 C -0.127 4.127 16 H 0.123 0.877 17 C -0.730 4.730 18 S 2.600 3.400 19 C -0.808 4.808 20 O -0.936 6.936 21 O -0.930 6.930 22 C -0.190 4.190 23 C -0.079 4.079 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.103 0.897 27 H 0.147 0.853 28 H 0.227 0.773 29 H -0.170 1.170 30 H -0.161 1.161 31 H 0.235 0.765 32 H 0.122 0.878 33 H 0.100 0.900 34 H 0.154 0.846 35 H 0.155 0.845 36 H 0.146 0.854 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.103 0.897 40 H 0.120 0.880 41 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 5.848 2.277 -2.112 6.622 hybrid contribution -1.209 -1.376 -1.178 2.178 sum 4.639 0.900 -3.291 5.759 Atomic orbital electron populations 1.20638 0.88667 1.03471 1.02657 1.18715 0.98416 0.90612 1.03133 1.24432 0.98687 1.00745 1.11537 1.24433 0.91230 0.95184 1.03578 1.86641 1.27537 1.89191 1.29037 0.95452 0.84983 0.80034 0.83493 1.82701 1.02953 0.98439 1.68867 1.24565 0.97911 0.96902 1.18948 1.16923 0.81462 0.87450 0.75827 1.90862 1.81501 1.18165 1.49373 1.45529 1.05090 1.09784 1.75932 1.21844 0.86974 0.92564 0.97156 0.86993 1.23353 0.95630 1.02426 0.95491 1.22383 0.90467 1.00808 0.99022 0.87666 1.30315 1.05574 1.13827 1.23321 1.07959 0.78081 0.76154 0.77842 1.30300 1.25674 1.12681 1.12144 1.93617 1.85886 1.27550 1.86525 1.93627 1.67036 1.76057 1.56304 1.23659 0.97256 0.99694 0.98388 1.20718 0.90883 1.00123 0.96178 0.91245 0.91761 0.89683 0.85309 0.77333 1.17040 1.16051 0.76535 0.87810 0.90027 0.84609 0.84548 0.85352 0.85136 0.85303 0.89696 0.87990 0.82733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.03 8.67 36.01 0.31 0.34 16 2 C -0.10 -0.07 5.75 -106.45 -0.61 -0.68 16 3 C -0.23 0.06 5.53 -35.86 -0.20 -0.14 16 4 C -0.03 0.04 2.76 36.00 0.10 0.14 16 5 O -0.52 0.23 9.85 -35.23 -0.35 -0.12 16 6 Si 0.66 -1.07 31.31 -169.99 -5.32 -6.39 16 7 S 0.20 -0.23 19.79 -107.50 -2.13 -2.35 16 8 C -0.26 -0.41 6.45 -36.79 -0.24 -0.64 16 9 C 0.60 1.65 7.78 -12.89 -0.10 1.55 16 10 O -0.52 -3.29 16.44 5.19 0.09 -3.21 16 11 N -0.71 0.12 5.26 -54.35 -0.29 -0.17 16 12 C 0.12 -0.11 4.32 -67.12 -0.29 -0.40 16 13 H 0.11 0.04 7.46 -51.93 -0.39 -0.35 16 14 C -0.13 0.45 7.39 -25.92 -0.19 0.26 16 15 C -0.11 0.31 3.53 -89.81 -0.32 -0.01 16 16 H 0.11 -0.31 8.13 -51.92 -0.42 -0.73 16 17 C -0.60 2.95 5.64 37.16 0.21 3.16 16 18 S 2.42 -5.40 5.35 -107.50 -0.58 -5.98 16 19 C -0.66 3.19 10.62 101.05 1.07 4.26 16 20 O -0.94 -1.63 18.10 -57.83 -1.05 -2.68 16 21 O -0.93 -1.79 18.10 -57.83 -1.05 -2.84 16 22 C -0.15 0.18 7.43 -25.92 -0.19 -0.01 16 23 C -0.05 -0.08 9.80 -40.43 -0.40 -0.47 16 24 H 0.07 -0.07 8.14 -51.93 -0.42 -0.50 16 25 H 0.06 -0.03 8.13 -51.93 -0.42 -0.45 16 26 H 0.08 0.02 6.42 -51.93 -0.33 -0.31 16 27 H 0.13 -0.25 7.96 -51.93 -0.41 -0.67 16 28 H 0.38 -1.06 8.66 45.56 0.39 -0.67 16 29 H -0.25 -0.12 7.11 56.52 0.40 0.28 16 30 H -0.24 -0.28 7.11 56.52 0.40 0.13 16 31 H 0.40 -0.94 7.81 -40.82 -0.32 -1.26 16 32 H 0.10 -0.48 8.10 -51.93 -0.42 -0.90 16 33 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 34 H 0.14 -0.93 7.84 -51.92 -0.41 -1.34 16 35 H 0.14 -0.97 8.14 -51.92 -0.42 -1.40 16 36 H 0.13 -0.84 8.14 -51.93 -0.42 -1.26 16 37 H 0.13 -0.58 8.14 -51.92 -0.42 -1.01 16 38 H 0.13 -0.83 8.14 -51.92 -0.42 -1.25 16 39 H 0.08 0.04 8.14 -51.93 -0.42 -0.39 16 40 H 0.10 -0.23 7.90 -51.93 -0.41 -0.64 16 41 H 0.16 0.26 8.06 -52.49 -0.42 -0.16 16 LS Contribution 367.57 15.07 5.54 5.54 Total: 0.00 -12.80 367.57 -11.69 -24.49 By element: Atomic # 1 Polarization: -7.90 SS G_CDS: -5.72 Total: -13.62 kcal Atomic # 6 Polarization: 8.18 SS G_CDS: -0.84 Total: 7.34 kcal Atomic # 7 Polarization: 0.12 SS G_CDS: -0.29 Total: -0.17 kcal Atomic # 8 Polarization: -6.49 SS G_CDS: -2.35 Total: -8.85 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: -5.32 Total: -6.39 kcal Atomic # 16 Polarization: -5.63 SS G_CDS: -2.70 Total: -8.33 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -12.80 -11.69 -24.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.143 kcal (2) G-P(sol) polarization free energy of solvation -12.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.18 seconds