Wall clock time and date at job start Tue Mar 9 2021 12:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33818 * 122.45227 * 2 1 4 4 C 1.50696 * 124.51851 * 359.97438 * 3 2 1 5 5 O 1.42893 * 109.47573 * 329.99412 * 4 3 2 6 6 Si 1.86308 * 109.46832 * 209.99658 * 4 3 2 7 7 S 1.70609 * 110.95496 * 180.02562 * 3 2 1 8 8 C 1.75833 * 91.56432 * 0.02562 * 7 3 2 9 9 C 1.46588 * 125.45856 * 179.97438 * 8 7 3 10 10 O 1.21703 * 119.99931 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99989 * 359.75364 * 9 8 7 12 12 C 1.46499 * 120.00195 * 180.27576 * 11 9 8 13 13 H 1.08998 * 112.84625 * 23.79619 * 12 11 9 14 14 C 1.53781 * 113.61598 * 154.99527 * 12 11 9 15 15 C 1.53781 * 87.07867 * 89.11692 * 14 12 11 16 16 H 1.09008 * 113.61540 * 270.80033 * 15 14 12 17 17 C 1.53000 * 113.61653 * 139.98158 * 15 14 12 18 18 S 1.81403 * 109.47485 * 174.99814 * 17 15 14 19 19 C 1.81399 * 101.92042 * 179.97438 * 18 17 15 20 20 O 1.42102 * 108.57544 * 294.48759 * 18 17 15 21 21 O 1.42105 * 108.57301 * 65.50961 * 18 17 15 22 22 C 1.53779 * 87.08432 * 25.43214 * 15 14 12 23 23 C 1.36647 * 109.08400 * 0.26372 * 8 7 3 24 24 H 1.08999 * 109.47461 * 89.99134 * 1 2 3 25 25 H 1.08997 * 109.47138 * 209.99961 * 1 2 3 26 26 H 1.09000 * 109.46750 * 329.99602 * 1 2 3 27 27 H 1.09002 * 109.47348 * 89.99823 * 4 3 2 28 28 H 0.96706 * 114.00321 * 300.00686 * 5 4 3 29 29 H 1.48504 * 109.99811 * 58.68183 * 6 4 3 30 30 H 1.48501 * 109.99803 * 180.02562 * 6 4 3 31 31 H 0.97000 * 119.99736 * 0.26848 * 11 9 8 32 32 H 1.08999 * 113.61022 * 203.66432 * 14 12 11 33 33 H 1.08989 * 113.61263 * 334.56832 * 14 12 11 34 34 H 1.09005 * 109.46622 * 295.00166 * 17 15 14 35 35 H 1.09001 * 109.47148 * 54.99440 * 17 15 14 36 36 H 1.08997 * 109.47093 * 60.00276 * 19 18 17 37 37 H 1.09004 * 109.46344 * 179.97438 * 19 18 17 38 38 H 1.08999 * 109.46935 * 299.99965 * 19 18 17 39 39 H 1.09007 * 113.61621 * 220.02432 * 22 15 14 40 40 H 1.08999 * 113.61644 * 89.11386 * 22 15 14 41 41 H 1.07994 * 123.35193 * 179.71400 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 6 1.6356 2.5161 -0.0006 5 8 0.3758 2.4980 -0.6747 6 14 2.7930 3.6824 -0.8786 7 16 3.8969 0.7892 -0.0007 8 6 3.5936 -0.9428 -0.0018 9 6 4.6231 -1.9864 -0.0033 10 8 4.3000 -3.1598 -0.0045 11 7 5.9272 -1.6465 -0.0091 12 6 6.9561 -2.6894 -0.0167 13 1 6.5969 -3.6352 -0.4225 14 6 8.2948 -2.2298 -0.6179 15 6 8.6865 -1.7792 0.7993 16 1 8.3954 -0.7538 1.0276 17 6 10.1444 -2.0762 1.1559 18 16 10.5247 -1.3710 2.7834 19 6 12.2653 -1.8355 2.9956 20 8 10.4410 0.0448 2.6940 21 8 9.7523 -2.0512 3.7632 22 6 7.6971 -2.8335 1.3231 23 6 2.2446 -1.1601 -0.0075 24 1 -0.3634 0.0002 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5139 27 1 1.4930 2.8507 1.0270 28 1 0.4269 2.2093 -1.5963 29 1 3.0207 3.2195 -2.2711 30 1 2.2234 5.0538 -0.8855 31 1 6.1847 -0.7113 -0.0082 32 1 8.9053 -3.0477 -1.0004 33 1 8.1958 -1.4071 -1.3259 34 1 10.2994 -3.1549 1.1820 35 1 10.7994 -1.6331 0.4058 36 1 12.8583 -1.3997 2.1915 37 1 12.6260 -1.4642 3.9548 38 1 12.3576 -2.9212 2.9678 39 1 7.1156 -2.4981 2.1819 40 1 8.1443 -3.8165 1.4712 41 1 1.8019 -2.1452 -0.0138 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_6739946.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:29 Heat of formation + Delta-G solvation = -80.506918 kcal Electronic energy + Delta-G solvation = -25632.905307 eV Core-core repulsion = 21734.398184 eV Total energy + Delta-G solvation = -3898.507123 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 346.079 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.45281 -40.20989 -39.35807 -37.91723 -37.42651 -36.94928 -34.86625 -32.27936 -30.94628 -30.25730 -30.07812 -26.74076 -26.69578 -24.77057 -23.77109 -22.06956 -20.56236 -20.06811 -19.79008 -19.46164 -17.82992 -17.67905 -17.38580 -17.13018 -16.95280 -16.82669 -16.53941 -16.15148 -16.06373 -15.55945 -15.24263 -15.04577 -14.57853 -14.47871 -14.13243 -13.96980 -13.91863 -13.87649 -13.53534 -13.47652 -13.14899 -13.09921 -13.02511 -12.95833 -12.88033 -12.43786 -12.37172 -12.26532 -12.16122 -11.86167 -11.82891 -11.34155 -11.31241 -10.98219 -10.89541 -10.27250 -9.70145 -9.40239 -5.12155 -0.85645 -0.69493 0.27870 0.68813 1.05182 1.29985 1.53189 1.86213 1.91755 1.96259 2.01738 2.80140 3.16283 3.22402 3.38278 3.46760 3.53110 3.64146 3.68427 3.79427 4.07729 4.11614 4.13110 4.23791 4.26342 4.42321 4.48566 4.52788 4.55776 4.73816 4.77177 4.81474 4.83171 4.87980 4.97417 4.99081 5.02014 5.03338 5.12462 5.35828 5.42267 5.50097 6.28412 6.35622 6.96930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.109 4.109 3 C -0.236 4.236 4 C -0.038 4.038 5 O -0.529 6.529 6 Si 0.735 3.265 7 S 0.260 5.740 8 C -0.289 4.289 9 C 0.592 3.408 10 O -0.569 6.569 11 N -0.700 5.700 12 C 0.105 3.895 13 H 0.095 0.905 14 C -0.112 4.112 15 C -0.113 4.113 16 H 0.102 0.898 17 C -0.583 4.583 18 S 2.409 3.591 19 C -0.646 4.646 20 O -0.989 6.989 21 O -0.988 6.988 22 C -0.159 4.159 23 C -0.058 4.058 24 H 0.076 0.924 25 H 0.062 0.938 26 H 0.081 0.919 27 H 0.141 0.859 28 H 0.388 0.612 29 H -0.272 1.272 30 H -0.274 1.274 31 H 0.411 0.589 32 H 0.125 0.875 33 H 0.093 0.907 34 H 0.164 0.836 35 H 0.171 0.829 36 H 0.153 0.847 37 H 0.126 0.874 38 H 0.151 0.849 39 H 0.059 0.941 40 H 0.113 0.887 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.454 1.459 -3.706 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.356 4.356 4 C -0.149 4.149 5 O -0.337 6.337 6 Si 0.636 3.364 7 S 0.529 5.471 8 C -0.408 4.408 9 C 0.380 3.620 10 O -0.450 6.450 11 N -0.351 5.351 12 C 0.000 4.000 13 H 0.113 0.887 14 C -0.151 4.151 15 C -0.132 4.132 16 H 0.120 0.880 17 C -0.715 4.715 18 S 2.598 3.402 19 C -0.798 4.798 20 O -0.986 6.986 21 O -0.985 6.985 22 C -0.198 4.198 23 C -0.092 4.092 24 H 0.095 0.905 25 H 0.080 0.920 26 H 0.100 0.900 27 H 0.158 0.842 28 H 0.238 0.762 29 H -0.197 1.197 30 H -0.200 1.200 31 H 0.248 0.752 32 H 0.143 0.857 33 H 0.111 0.889 34 H 0.182 0.818 35 H 0.189 0.811 36 H 0.171 0.829 37 H 0.144 0.856 38 H 0.169 0.831 39 H 0.078 0.922 40 H 0.131 0.869 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.942 2.793 -3.189 9.003 hybrid contribution -1.826 -1.500 -0.874 2.519 sum 6.116 1.293 -4.063 7.456 Atomic orbital electron populations 1.20608 0.88180 1.03178 1.03067 1.18761 0.98901 0.90498 1.03982 1.24687 0.99432 1.00998 1.10476 1.24651 0.91220 0.94560 1.04451 1.86620 1.27943 1.89209 1.29950 0.94648 0.83534 0.76838 0.81369 1.82412 1.01727 0.95639 1.67295 1.24622 0.97682 0.98594 1.19939 1.17178 0.82456 0.87109 0.75287 1.90823 1.82300 1.19987 1.51866 1.45493 1.04446 1.10702 1.74496 1.22024 0.87859 0.92022 0.98083 0.88651 1.23338 0.93370 1.03286 0.95079 1.22417 0.91420 1.00102 0.99258 0.87997 1.30171 1.04651 1.15580 1.21057 1.07758 0.79037 0.74920 0.78448 1.30157 1.22302 1.14354 1.12987 1.93550 1.87072 1.30570 1.87453 1.93561 1.69408 1.76444 1.59125 1.23731 0.97862 1.00995 0.97189 1.20763 0.91327 1.00238 0.96859 0.90513 0.91951 0.89985 0.84192 0.76233 1.19693 1.19976 0.75245 0.85724 0.88866 0.81822 0.81121 0.82879 0.85554 0.83066 0.92211 0.86907 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.02 8.67 71.24 0.62 0.59 16 2 C -0.11 -0.25 5.75 -21.05 -0.12 -0.37 16 3 C -0.24 0.13 5.53 24.68 0.14 0.27 16 4 C -0.04 0.11 2.76 71.23 0.20 0.31 16 5 O -0.53 0.60 9.85 -148.98 -1.47 -0.86 16 6 Si 0.74 -2.75 31.31 68.60 2.15 -0.60 16 7 S 0.26 -0.62 19.79 -56.49 -1.12 -1.74 16 8 C -0.29 -1.30 6.45 24.08 0.16 -1.15 16 9 C 0.59 4.48 7.78 86.42 0.67 5.16 16 10 O -0.57 -8.91 16.44 -4.36 -0.07 -8.98 16 11 N -0.70 -0.52 5.26 -444.08 -2.33 -2.86 16 12 C 0.11 -0.12 4.32 45.52 0.20 0.08 16 13 H 0.10 0.22 7.46 -2.39 -0.02 0.21 16 14 C -0.11 0.96 7.39 31.12 0.23 1.19 16 15 C -0.11 0.73 3.53 -10.27 -0.04 0.70 16 16 H 0.10 -0.60 8.13 -2.38 -0.02 -0.62 16 17 C -0.58 7.00 5.64 71.98 0.41 7.40 16 18 S 2.41 -10.57 5.35 -56.49 -0.30 -10.87 16 19 C -0.65 7.42 10.62 113.37 1.20 8.63 16 20 O -0.99 -4.42 18.10 -127.37 -2.31 -6.72 16 21 O -0.99 -5.40 18.10 -127.37 -2.30 -7.70 16 22 C -0.16 0.25 7.43 31.12 0.23 0.48 16 23 C -0.06 -0.31 9.80 21.72 0.21 -0.10 16 24 H 0.08 -0.12 8.14 -2.39 -0.02 -0.14 16 25 H 0.06 0.03 8.13 -2.39 -0.02 0.01 16 26 H 0.08 0.08 6.42 -2.39 -0.02 0.06 16 27 H 0.14 -0.69 7.96 -2.39 -0.02 -0.70 16 28 H 0.39 -2.26 8.66 -74.05 -0.64 -2.91 16 29 H -0.27 -0.14 7.11 99.48 0.71 0.56 16 30 H -0.27 -0.72 7.11 99.48 0.71 -0.01 16 31 H 0.41 -1.81 7.81 -92.71 -0.72 -2.54 16 32 H 0.12 -1.53 8.10 -2.39 -0.02 -1.55 16 33 H 0.09 -0.95 8.14 -2.39 -0.02 -0.97 16 34 H 0.16 -2.80 7.84 -2.39 -0.02 -2.82 16 35 H 0.17 -3.13 8.14 -2.39 -0.02 -3.15 16 36 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 37 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 38 H 0.15 -2.37 8.14 -2.39 -0.02 -2.39 16 39 H 0.06 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.11 -0.49 7.90 -2.39 -0.02 -0.50 16 41 H 0.14 0.93 8.06 -2.91 -0.02 0.91 16 Total: 0.00 -33.35 367.57 -3.91 -37.27 By element: Atomic # 1 Polarization: -19.85 SS G_CDS: -0.26 Total: -20.11 kcal Atomic # 6 Polarization: 19.08 SS G_CDS: 4.10 Total: 23.18 kcal Atomic # 7 Polarization: -0.52 SS G_CDS: -2.33 Total: -2.86 kcal Atomic # 8 Polarization: -18.12 SS G_CDS: -6.15 Total: -24.27 kcal Atomic # 14 Polarization: -2.75 SS G_CDS: 2.15 Total: -0.60 kcal Atomic # 16 Polarization: -11.19 SS G_CDS: -1.42 Total: -12.61 kcal Total: -33.35 -3.91 -37.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_6739946.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.241 kcal (2) G-P(sol) polarization free energy of solvation -33.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds