Wall clock time and date at job start Tue Mar 9 2021 12:55:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81407 * 1 3 3 O 1.42090 * 108.57880 * 2 1 4 4 O 1.42104 * 108.57392 * 228.97528 * 2 1 3 5 5 C 1.81400 * 101.92269 * 114.48945 * 2 1 3 6 6 C 1.53001 * 109.47019 * 179.97438 * 5 2 1 7 7 H 1.08995 * 112.84659 * 43.80733 * 6 5 2 8 8 C 1.53778 * 113.61265 * 174.99810 * 6 5 2 9 9 C 1.53782 * 87.08099 * 140.06677 * 8 6 5 10 10 H 1.09004 * 113.61842 * 219.93757 * 9 8 6 11 11 N 1.46498 * 113.61528 * 89.11408 * 9 8 6 12 12 C 1.34778 * 119.99967 * 154.99962 * 11 9 8 13 13 O 1.21634 * 120.00065 * 0.02562 * 12 11 9 14 14 C 1.47189 * 119.99794 * 180.02562 * 12 11 9 15 15 C 1.36008 * 123.46364 * 0.02562 * 14 12 11 16 16 S 1.70447 * 110.82000 * 179.70580 * 15 14 12 17 17 C 1.75506 * 92.44178 * 0.35934 * 16 15 14 18 18 C 1.50703 * 124.71117 * 179.90581 * 17 16 15 19 19 O 1.42896 * 109.47055 * 119.69758 * 18 17 16 20 20 Si 1.86304 * 109.46911 * 359.69650 * 18 17 16 21 21 C 1.32769 * 110.57652 * 359.63934 * 17 16 15 22 22 C 1.53775 * 113.69182 * 272.53449 * 6 5 2 23 23 H 1.09003 * 109.46821 * 305.50861 * 1 2 3 24 24 H 1.09000 * 109.47173 * 65.51127 * 1 2 3 25 25 H 1.09000 * 109.46785 * 185.51030 * 1 2 3 26 26 H 1.09010 * 109.46985 * 59.99944 * 5 2 1 27 27 H 1.09000 * 109.47373 * 299.99979 * 5 2 1 28 28 H 1.09003 * 113.61322 * 25.52181 * 8 6 5 29 29 H 1.08993 * 113.61888 * 254.61461 * 8 6 5 30 30 H 0.97004 * 119.99626 * 335.00677 * 11 9 8 31 31 H 1.08002 * 124.59099 * 0.02562 * 15 14 12 32 32 H 1.09002 * 109.47152 * 239.69566 * 18 17 16 33 33 H 0.96708 * 114.00101 * 299.99358 * 19 18 17 34 34 H 1.48501 * 109.99652 * 179.97438 * 20 18 17 35 35 H 1.48494 * 110.00064 * 301.31786 * 20 18 17 36 36 H 1.07996 * 123.45622 * 180.24837 * 21 17 16 37 37 H 1.09002 * 113.61176 * 105.45902 * 22 6 5 38 38 H 1.09000 * 113.61951 * 334.56196 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8141 0.0000 0.0000 3 8 2.2668 1.3468 0.0000 4 8 2.2667 -0.8842 -1.0162 5 6 2.1888 -0.7357 1.6152 6 6 3.7056 -0.8196 1.7978 7 1 4.2206 0.0877 1.4825 8 6 4.1319 -1.3182 3.1887 9 6 5.2299 -2.1255 2.4761 10 1 5.3809 -3.1208 2.8940 11 7 6.4823 -1.3858 2.3015 12 6 7.6470 -2.0525 2.1770 13 8 7.6582 -3.2684 2.2093 14 6 8.9053 -1.3093 2.0021 15 6 8.9744 0.0483 1.9566 16 16 10.5854 0.5664 1.7527 17 6 11.1897 -1.0809 1.7158 18 6 12.6386 -1.4599 1.5486 19 8 13.0724 -2.1999 2.6915 20 14 13.6687 0.0833 1.3803 21 6 10.1937 -1.9467 1.8615 22 6 4.3257 -2.1082 1.2324 23 1 -0.3633 0.5969 0.8366 24 1 -0.3633 0.4260 -0.9352 25 1 -0.3633 -1.0229 0.0987 26 1 1.7611 -1.7371 1.6664 27 1 1.7612 -0.1172 2.4043 28 1 3.3819 -1.9391 3.6787 29 1 4.5189 -0.5307 3.8351 30 1 6.4733 -0.4161 2.2755 31 1 8.1243 0.7087 2.0435 32 1 12.7531 -2.0725 0.6543 33 1 12.9987 -1.7152 3.5251 34 1 15.0999 -0.2769 1.2153 35 1 13.2067 0.8776 0.2138 36 1 10.3326 -3.0176 1.8734 37 1 4.8692 -1.9583 0.2995 38 1 3.6287 -2.9451 1.1875 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534690_6894386.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:34 Heat of formation + Delta-G solvation = -80.091753 kcal Electronic energy + Delta-G solvation = -23544.722987 eV Core-core repulsion = 19801.771485 eV Total energy + Delta-G solvation = -3742.951501 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.063 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.50562 -39.85985 -38.69557 -37.96213 -37.10659 -36.99390 -34.84930 -31.97255 -30.84931 -30.07427 -26.99320 -26.75303 -26.05091 -23.91786 -22.27477 -20.63668 -20.46182 -19.77759 -18.90337 -18.24213 -17.68757 -17.59158 -17.16829 -16.96680 -16.76484 -16.39431 -16.04773 -15.92476 -15.44959 -15.26166 -14.97808 -14.50740 -14.14891 -14.13234 -14.00620 -13.91066 -13.70676 -13.64972 -13.44534 -13.12695 -13.00403 -12.90878 -12.67843 -12.38948 -12.31291 -12.19788 -11.94924 -11.85212 -11.34381 -11.11632 -10.99656 -10.62041 -10.23885 -10.00255 -9.46704 -5.13463 -0.89384 -0.37156 0.36521 0.67462 0.78988 1.21816 1.59849 1.89862 1.92121 2.01942 2.20493 2.76352 3.12500 3.36295 3.38330 3.44198 3.63008 3.64299 3.76031 3.86872 3.95551 4.08529 4.10098 4.20764 4.24645 4.39193 4.40990 4.51595 4.68411 4.73992 4.80253 4.82252 4.96029 4.97720 4.99081 5.00930 5.13021 5.14814 5.52255 6.39757 6.68113 7.08991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.409 3.591 3 O -0.991 6.991 4 O -0.990 6.990 5 C -0.583 4.583 6 C -0.110 4.110 7 H 0.102 0.898 8 C -0.110 4.110 9 C 0.106 3.894 10 H 0.091 0.909 11 N -0.697 5.697 12 C 0.577 3.423 13 O -0.582 6.582 14 C -0.184 4.184 15 C -0.192 4.192 16 S 0.254 5.746 17 C -0.248 4.248 18 C -0.038 4.038 19 O -0.552 6.552 20 Si 0.741 3.259 21 C -0.076 4.076 22 C -0.160 4.160 23 H 0.153 0.847 24 H 0.126 0.874 25 H 0.151 0.849 26 H 0.163 0.837 27 H 0.172 0.828 28 H 0.122 0.878 29 H 0.094 0.906 30 H 0.414 0.586 31 H 0.203 0.797 32 H 0.113 0.887 33 H 0.397 0.603 34 H -0.272 1.272 35 H -0.255 1.255 36 H 0.132 0.868 37 H 0.056 0.944 38 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 6.371 6.381 10.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.797 4.797 2 S 2.598 3.402 3 O -0.988 6.988 4 O -0.987 6.987 5 C -0.715 4.715 6 C -0.130 4.130 7 H 0.120 0.880 8 C -0.149 4.149 9 C 0.001 3.999 10 H 0.109 0.891 11 N -0.349 5.349 12 C 0.364 3.636 13 O -0.463 6.463 14 C -0.202 4.202 15 C -0.330 4.330 16 S 0.520 5.480 17 C -0.365 4.365 18 C -0.150 4.150 19 O -0.360 6.360 20 Si 0.643 3.357 21 C -0.105 4.105 22 C -0.199 4.199 23 H 0.172 0.828 24 H 0.145 0.855 25 H 0.170 0.830 26 H 0.181 0.819 27 H 0.189 0.811 28 H 0.140 0.860 29 H 0.113 0.887 30 H 0.251 0.749 31 H 0.220 0.780 32 H 0.131 0.869 33 H 0.247 0.753 34 H -0.198 1.198 35 H -0.180 1.180 36 H 0.150 0.850 37 H 0.075 0.925 38 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.257 7.266 4.646 9.219 hybrid contribution -1.541 -2.123 -0.021 2.623 sum -4.797 5.144 4.625 8.418 Atomic orbital electron populations 1.30152 1.22904 1.13701 1.12986 1.07752 0.79579 0.74397 0.78437 1.93544 1.80865 1.36827 1.87556 1.93560 1.80715 1.67511 1.56890 1.30171 1.03739 1.16215 1.21338 1.22392 0.92184 0.98731 0.99675 0.88031 1.23316 0.96617 1.00024 0.94944 1.21969 0.82942 0.97268 0.97764 0.89122 1.45431 1.05366 1.10730 1.73330 1.17928 0.83877 0.86556 0.75217 1.90788 1.87630 1.15455 1.52394 1.20094 0.93759 0.93175 1.13167 1.26186 1.05683 0.98023 1.03142 1.82908 0.95437 1.03619 1.66007 1.24922 1.00665 0.97862 1.13070 1.24713 0.91607 1.06634 0.92052 1.86502 1.86397 1.45119 1.18001 0.94156 0.78092 0.76504 0.86955 1.20962 0.89874 1.00707 0.98960 1.23723 0.99463 0.98868 0.97831 0.82815 0.85535 0.83039 0.81886 0.81060 0.85959 0.88743 0.74853 0.78001 0.86950 0.75270 1.19791 1.18049 0.85033 0.92462 0.87190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 7.22 10.62 113.37 1.20 8.42 16 2 S 2.41 -9.56 5.35 -56.49 -0.30 -9.86 16 3 O -0.99 -4.84 18.10 -127.37 -2.30 -7.15 16 4 O -0.99 -6.03 18.10 -127.37 -2.31 -8.34 16 5 C -0.58 6.78 5.65 71.98 0.41 7.18 16 6 C -0.11 0.70 3.53 -10.27 -0.04 0.66 16 7 H 0.10 -0.60 8.13 -2.39 -0.02 -0.62 16 8 C -0.11 0.93 7.39 31.12 0.23 1.16 16 9 C 0.11 -0.08 4.32 45.52 0.20 0.12 16 10 H 0.09 0.32 7.46 -2.38 -0.02 0.30 16 11 N -0.70 -0.14 5.23 -443.52 -2.32 -2.46 16 12 C 0.58 4.53 7.79 86.59 0.67 5.20 16 13 O -0.58 -9.97 16.40 -4.14 -0.07 -10.03 16 14 C -0.18 -0.74 5.98 -19.87 -0.12 -0.86 16 15 C -0.19 0.64 10.38 67.30 0.70 1.34 16 16 S 0.25 -1.12 20.18 -56.49 -1.14 -2.26 16 17 C -0.25 -0.24 5.68 24.51 0.14 -0.10 16 18 C -0.04 -0.01 2.95 71.24 0.21 0.20 16 19 O -0.55 -0.84 12.85 -148.98 -1.91 -2.75 16 20 Si 0.74 -2.27 30.91 68.60 2.12 -0.15 16 21 C -0.08 -0.46 9.91 22.67 0.22 -0.23 16 22 C -0.16 0.14 7.43 31.12 0.23 0.37 16 23 H 0.15 -2.45 8.14 -2.39 -0.02 -2.47 16 24 H 0.13 -1.20 8.14 -2.39 -0.02 -1.22 16 25 H 0.15 -2.32 8.14 -2.39 -0.02 -2.34 16 26 H 0.16 -2.69 7.85 -2.39 -0.02 -2.71 16 27 H 0.17 -3.10 8.14 -2.39 -0.02 -3.11 16 28 H 0.12 -1.44 8.10 -2.39 -0.02 -1.46 16 29 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 30 H 0.41 -2.62 7.20 -92.71 -0.67 -3.28 16 31 H 0.20 -2.14 7.01 -2.91 -0.02 -2.16 16 32 H 0.11 0.21 7.96 -2.39 -0.02 0.19 16 33 H 0.40 -2.80 8.70 -74.05 -0.64 -3.44 16 34 H -0.27 -0.98 7.11 99.48 0.71 -0.27 16 35 H -0.26 -0.02 7.11 99.48 0.71 0.68 16 36 H 0.13 1.34 8.06 -2.91 -0.02 1.31 16 37 H 0.06 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.11 -0.36 7.90 -2.39 -0.02 -0.38 16 Total: 0.00 -36.95 350.17 -4.34 -41.30 By element: Atomic # 1 Polarization: -21.60 SS G_CDS: -0.17 Total: -21.77 kcal Atomic # 6 Polarization: 19.40 SS G_CDS: 4.06 Total: 23.46 kcal Atomic # 7 Polarization: -0.14 SS G_CDS: -2.32 Total: -2.46 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -6.59 Total: -28.27 kcal Atomic # 14 Polarization: -2.27 SS G_CDS: 2.12 Total: -0.15 kcal Atomic # 16 Polarization: -10.67 SS G_CDS: -1.44 Total: -12.12 kcal Total: -36.95 -4.34 -41.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534690_6894386.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.796 kcal (2) G-P(sol) polarization free energy of solvation -36.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds