Wall clock time and date at job start Tue Mar 9 2021 12:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 O 1.42899 * 109.47669 * 2 1 4 4 C 1.35900 * 116.99805 * 275.32705 * 3 2 1 5 5 C 1.38730 * 120.06008 * 5.07896 * 4 3 2 6 6 C 1.38146 * 119.94850 * 179.74582 * 5 4 3 7 7 C 1.38272 * 120.05120 * 0.50894 * 6 5 4 8 8 C 1.50700 * 119.94030 * 179.74617 * 7 6 5 9 9 O 1.42899 * 109.46936 * 245.02098 * 8 7 6 10 10 Si 1.86299 * 109.47236 * 5.01983 * 8 7 6 11 11 C 1.38259 * 120.11128 * 359.76454 * 7 6 5 12 12 C 1.38150 * 120.05858 * 359.97438 * 11 7 6 13 13 C 1.50706 * 109.47418 * 119.99976 * 2 1 3 14 14 O 1.21274 * 119.99993 * 245.00569 * 13 2 1 15 15 N 1.34778 * 119.99399 * 64.99636 * 13 2 1 16 16 C 1.46501 * 119.99256 * 180.02562 * 15 13 2 17 17 H 1.08998 * 112.85335 * 23.80331 * 16 15 13 18 18 C 1.53789 * 113.61207 * 155.00093 * 16 15 13 19 19 C 1.53777 * 87.08176 * 139.97733 * 18 16 15 20 20 H 1.09004 * 113.61707 * 89.19735 * 19 18 16 21 21 C 1.52997 * 113.61692 * 220.01706 * 19 18 16 22 22 S 1.81405 * 109.47259 * 185.00171 * 21 19 18 23 23 C 1.81397 * 101.92193 * 180.02562 * 22 21 19 24 24 O 1.42090 * 108.57925 * 65.51158 * 22 21 19 25 25 O 1.42106 * 108.57736 * 294.48914 * 22 21 19 26 26 C 1.53783 * 113.61256 * 252.49417 * 16 15 13 27 27 H 1.08997 * 109.47365 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47320 * 300.00116 * 1 2 3 29 29 H 1.09002 * 109.46895 * 60.00026 * 1 2 3 30 30 H 1.09004 * 109.47320 * 239.99884 * 2 1 3 31 31 H 1.08008 * 120.02301 * 359.97438 * 5 4 3 32 32 H 1.07998 * 119.97493 * 180.22721 * 6 5 4 33 33 H 1.09003 * 109.46941 * 125.02176 * 8 7 6 34 34 H 0.96704 * 114.00219 * 60.00034 * 9 8 7 35 35 H 1.48502 * 109.99763 * 180.02562 * 10 8 7 36 36 H 1.48499 * 110.00242 * 301.31939 * 10 8 7 37 37 H 1.08003 * 119.97340 * 179.97438 * 11 7 6 38 38 H 1.07995 * 120.02750 * 179.97438 * 12 11 7 39 39 H 0.96990 * 120.00432 * 0.02562 * 15 13 2 40 40 H 1.08998 * 113.61604 * 25.43212 * 18 16 15 41 41 H 1.08999 * 113.61423 * 254.52832 * 18 16 15 42 42 H 1.09005 * 109.46895 * 65.00589 * 21 19 18 43 43 H 1.08997 * 109.47051 * 305.00248 * 21 19 18 44 44 H 1.08997 * 109.47033 * 300.00381 * 23 22 21 45 45 H 1.08995 * 109.47402 * 179.97438 * 23 22 21 46 46 H 1.09008 * 109.47363 * 59.99757 * 23 22 21 47 47 H 1.08995 * 113.61352 * 105.47610 * 26 16 15 48 48 H 1.08995 * 113.61529 * 334.56999 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.1061 1.9663 -1.2057 5 6 1.6544 1.3303 -2.3529 6 6 1.7521 1.9639 -3.5766 7 6 2.3091 3.2268 -3.6600 8 6 2.4197 3.9133 -4.9969 9 8 3.7982 4.0832 -5.3326 10 14 1.5869 2.8738 -6.2995 11 6 2.7651 3.8604 -2.5189 12 6 2.6648 3.2332 -1.2920 13 6 2.0323 -0.7104 1.2305 14 8 2.6529 -0.0979 2.0734 15 7 1.7918 -2.0264 1.3941 16 6 2.2797 -2.7169 2.5906 17 1 2.4403 -2.0431 3.4322 18 6 1.4673 -3.9716 2.9521 19 6 2.8065 -4.6426 3.2998 20 1 3.1117 -4.4973 4.3361 21 6 2.8940 -6.1036 2.8541 22 16 4.4496 -6.8245 3.4467 23 6 4.3408 -8.5215 2.8150 24 8 4.4172 -6.8665 4.8666 25 8 5.5294 -6.1683 2.7964 26 6 3.4646 -3.6586 2.3181 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.2234 0.3421 -2.2888 32 1 1.3973 1.4707 -4.4694 33 1 1.9353 4.8884 -4.9457 34 1 4.2928 3.2545 -5.3956 35 1 1.6896 3.5398 -7.6229 36 1 2.2174 1.5306 -6.3572 37 1 3.2002 4.8466 -2.5866 38 1 3.0215 3.7285 -0.4011 39 1 1.2957 -2.5163 0.7199 40 1 0.9605 -4.4242 2.0998 41 1 0.8114 -3.8343 3.8118 42 1 2.8616 -6.1540 1.7657 43 1 2.0540 -6.6609 3.2688 44 1 3.4582 -9.0079 3.2305 45 1 5.2328 -9.0757 3.1067 46 1 4.2659 -8.5004 1.7277 47 1 4.4211 -3.2688 2.6661 48 1 3.5038 -4.0256 1.2926 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_10157680.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:55:58 Heat of formation + Delta-G solvation = -119.592708 kcal Electronic energy + Delta-G solvation = -30745.573576 eV Core-core repulsion = 26281.999508 eV Total energy + Delta-G solvation = -4463.574068 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 370.137 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.86678 -41.01507 -39.81066 -38.89823 -37.97424 -37.27253 -37.00061 -35.16168 -33.24403 -31.92123 -31.60048 -30.85974 -30.04358 -26.77029 -26.72301 -25.76783 -24.40691 -23.51848 -22.34286 -21.58045 -20.69714 -19.80563 -19.54645 -18.63574 -18.16483 -17.85223 -17.43238 -17.01858 -16.94391 -16.83322 -16.69014 -16.29555 -16.18743 -16.04718 -15.64899 -15.63354 -15.17323 -14.69266 -14.60964 -14.47898 -14.06366 -14.04702 -13.90490 -13.67139 -13.63355 -13.48151 -13.43717 -13.25994 -13.22977 -13.06827 -13.00518 -12.86318 -12.64273 -12.27309 -12.12081 -12.05718 -11.99812 -11.94557 -11.56859 -11.50011 -11.10300 -10.87476 -10.57147 -10.16168 -10.04581 -9.24103 -4.89950 -0.90421 0.26041 0.29519 1.34276 1.38398 1.50621 1.61471 1.92086 1.99338 2.49177 2.63595 2.77702 3.11502 3.35627 3.41650 3.45118 3.47011 3.63849 3.67860 3.71827 3.72400 3.85391 3.86911 3.93957 4.05643 4.09903 4.17815 4.28645 4.33218 4.36750 4.52583 4.53897 4.62472 4.66669 4.72260 4.73040 4.74620 4.82132 4.94238 4.96147 4.98799 5.04049 5.11477 5.15616 5.19396 5.24855 5.48747 5.49211 5.69659 6.26223 6.46331 6.50808 7.10553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.063 3.937 3 O -0.316 6.316 4 C 0.121 3.879 5 C -0.201 4.201 6 C -0.075 4.075 7 C -0.157 4.157 8 C -0.084 4.084 9 O -0.552 6.552 10 Si 0.775 3.225 11 C -0.059 4.059 12 C -0.168 4.168 13 C 0.513 3.487 14 O -0.574 6.574 15 N -0.694 5.694 16 C 0.111 3.889 17 H 0.089 0.911 18 C -0.107 4.107 19 C -0.113 4.113 20 H 0.093 0.907 21 C -0.577 4.577 22 S 2.401 3.599 23 C -0.642 4.642 24 O -0.997 6.997 25 O -0.990 6.990 26 C -0.160 4.160 27 H 0.114 0.886 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.129 0.871 31 H 0.164 0.836 32 H 0.154 0.846 33 H 0.121 0.879 34 H 0.385 0.615 35 H -0.308 1.308 36 H -0.275 1.275 37 H 0.133 0.867 38 H 0.124 0.876 39 H 0.423 0.577 40 H 0.129 0.871 41 H 0.088 0.912 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.154 0.846 45 H 0.125 0.875 46 H 0.155 0.845 47 H 0.052 0.948 48 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.758 -9.561 -6.356 15.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.003 3.997 3 O -0.229 6.229 4 C 0.076 3.924 5 C -0.220 4.220 6 C -0.092 4.092 7 C -0.158 4.158 8 C -0.192 4.192 9 O -0.360 6.360 10 Si 0.680 3.320 11 C -0.077 4.077 12 C -0.187 4.187 13 C 0.299 3.701 14 O -0.453 6.453 15 N -0.347 5.347 16 C 0.006 3.994 17 H 0.108 0.892 18 C -0.146 4.146 19 C -0.133 4.133 20 H 0.111 0.889 21 C -0.708 4.708 22 S 2.591 3.409 23 C -0.794 4.794 24 O -0.994 6.994 25 O -0.987 6.987 26 C -0.198 4.198 27 H 0.132 0.868 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.147 0.853 31 H 0.181 0.819 32 H 0.171 0.829 33 H 0.138 0.862 34 H 0.234 0.766 35 H -0.237 1.237 36 H -0.202 1.202 37 H 0.151 0.849 38 H 0.142 0.858 39 H 0.262 0.738 40 H 0.147 0.853 41 H 0.107 0.893 42 H 0.189 0.811 43 H 0.191 0.809 44 H 0.173 0.827 45 H 0.144 0.856 46 H 0.173 0.827 47 H 0.071 0.929 48 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.636 -8.482 -5.761 14.071 hybrid contribution 1.124 -0.327 -0.062 1.173 sum -8.512 -8.810 -5.823 13.563 Atomic orbital electron populations 1.22381 0.90034 1.05985 1.04491 1.22484 0.97498 0.81998 0.97676 1.86202 1.81475 1.27201 1.28056 1.19249 0.95773 0.92878 0.84476 1.21490 1.06361 1.02705 0.91396 1.21101 0.96508 0.93589 0.98021 1.20279 1.03472 0.96218 0.95836 1.25274 0.86791 1.08279 0.98888 1.86576 1.21288 1.36511 1.91648 0.94097 0.88747 0.75013 0.74136 1.20922 0.96393 0.99774 0.90639 1.20626 1.04422 0.94521 0.99125 1.20693 0.78878 0.83048 0.87470 1.90757 1.41640 1.67253 1.45607 1.45651 1.57261 1.07779 1.24032 1.22526 0.96033 0.92605 0.88239 0.89237 1.23348 0.95078 0.92192 1.04022 1.22094 1.00141 0.91163 0.99893 0.88852 1.30119 1.20696 1.05167 1.14834 1.07947 0.78450 0.79561 0.74986 1.30129 1.13157 1.21063 1.15101 1.93549 1.87754 1.87451 1.30630 1.93557 1.53127 1.74565 1.77477 1.23783 0.97962 0.96632 1.01441 0.86789 0.92462 0.89102 0.85331 0.81882 0.82892 0.86162 0.76553 1.23672 1.20184 0.84901 0.85824 0.73751 0.85327 0.89345 0.81133 0.80936 0.82738 0.85612 0.82657 0.92868 0.86744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 1.37 9.12 71.98 0.66 2.02 16 2 C 0.06 -0.13 2.64 29.85 0.08 -0.05 16 3 O -0.32 -2.15 9.34 -73.43 -0.69 -2.84 16 4 C 0.12 0.47 6.60 22.51 0.15 0.62 16 5 C -0.20 0.53 8.23 22.37 0.18 0.71 16 6 C -0.07 0.24 8.66 22.26 0.19 0.43 16 7 C -0.16 0.00 5.35 -19.85 -0.11 -0.11 16 8 C -0.08 0.07 2.80 71.24 0.20 0.27 16 9 O -0.55 -1.66 12.83 -148.98 -1.91 -3.57 16 10 Si 0.77 -2.83 29.88 68.60 2.05 -0.78 16 11 C -0.06 -0.18 9.68 22.25 0.22 0.03 16 12 C -0.17 -0.93 9.99 22.37 0.22 -0.70 16 13 C 0.51 1.70 7.18 87.66 0.63 2.32 16 14 O -0.57 -9.12 16.11 15.98 0.26 -8.87 16 15 N -0.69 3.78 5.32 -440.02 -2.34 1.44 16 16 C 0.11 -0.31 4.24 45.52 0.19 -0.12 16 17 H 0.09 0.35 7.46 -2.39 -0.02 0.33 16 18 C -0.11 1.10 7.39 31.12 0.23 1.33 16 19 C -0.11 0.70 3.66 -10.27 -0.04 0.66 16 20 H 0.09 -0.24 8.13 -2.38 -0.02 -0.26 16 21 C -0.58 7.32 5.64 71.98 0.41 7.72 16 22 S 2.40 -8.72 5.35 -56.49 -0.30 -9.02 16 23 C -0.64 7.62 10.62 113.37 1.20 8.82 16 24 O -1.00 -6.69 18.10 -127.37 -2.30 -8.99 16 25 O -0.99 -6.13 18.10 -127.37 -2.30 -8.43 16 26 C -0.16 0.40 7.43 31.12 0.23 0.63 16 27 H 0.11 -1.72 7.92 -2.39 -0.02 -1.74 16 28 H 0.06 -0.17 8.14 -2.38 -0.02 -0.19 16 29 H 0.09 -0.87 6.91 -2.39 -0.02 -0.88 16 30 H 0.13 -1.11 6.31 -2.38 -0.02 -1.12 16 31 H 0.16 -1.58 5.43 -2.91 -0.02 -1.59 16 32 H 0.15 -1.26 4.83 -2.91 -0.01 -1.28 16 33 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 34 H 0.39 -1.03 8.70 -74.05 -0.64 -1.67 16 35 H -0.31 -1.51 7.11 99.48 0.71 -0.80 16 36 H -0.28 0.34 7.00 99.48 0.70 1.04 16 37 H 0.13 0.29 8.06 -2.91 -0.02 0.26 16 38 H 0.12 0.80 8.06 -2.91 -0.02 0.78 16 39 H 0.42 -6.19 8.51 -92.72 -0.79 -6.98 16 40 H 0.13 -2.19 8.08 -2.39 -0.02 -2.20 16 41 H 0.09 -0.89 8.14 -2.39 -0.02 -0.91 16 42 H 0.17 -3.33 7.84 -2.39 -0.02 -3.35 16 43 H 0.17 -3.30 8.14 -2.39 -0.02 -3.32 16 44 H 0.15 -2.57 8.14 -2.39 -0.02 -2.59 16 45 H 0.13 -1.24 8.14 -2.39 -0.02 -1.26 16 46 H 0.16 -2.62 8.14 -2.39 -0.02 -2.64 16 47 H 0.05 0.22 8.14 -2.39 -0.02 0.20 16 48 H 0.11 -0.81 7.90 -2.39 -0.02 -0.83 16 Total: 0.00 -44.42 407.45 -3.30 -47.72 By element: Atomic # 1 Polarization: -30.86 SS G_CDS: -0.41 Total: -31.26 kcal Atomic # 6 Polarization: 19.95 SS G_CDS: 4.65 Total: 24.60 kcal Atomic # 7 Polarization: 3.78 SS G_CDS: -2.34 Total: 1.44 kcal Atomic # 8 Polarization: -25.75 SS G_CDS: -6.95 Total: -32.70 kcal Atomic # 14 Polarization: -2.83 SS G_CDS: 2.05 Total: -0.78 kcal Atomic # 16 Polarization: -8.72 SS G_CDS: -0.30 Total: -9.02 kcal Total: -44.42 -3.30 -47.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_10157680.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.870 kcal (2) G-P(sol) polarization free energy of solvation -44.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds