Wall clock time and date at job start Tue Mar 9 2021 12:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42097 * 108.57643 * 2 1 4 4 O 1.42103 * 108.57433 * 228.97578 * 2 1 3 5 5 C 1.81401 * 101.91854 * 114.48867 * 2 1 3 6 6 C 1.53005 * 109.46611 * 180.02562 * 5 2 1 7 7 H 1.08993 * 112.85537 * 43.80024 * 6 5 2 8 8 C 1.53788 * 113.61221 * 175.00071 * 6 5 2 9 9 C 1.53781 * 87.08063 * 140.06040 * 8 6 5 10 10 H 1.09002 * 113.61382 * 89.19888 * 9 8 6 11 11 N 1.46498 * 113.61158 * 220.01520 * 9 8 6 12 12 C 1.34777 * 119.99828 * 204.72374 * 11 9 8 13 13 O 1.21693 * 120.00014 * 0.28042 * 12 11 9 14 14 C 1.46682 * 120.00182 * 180.27909 * 12 11 9 15 15 C 1.37870 * 126.23378 * 179.71906 * 14 12 11 16 16 C 1.39835 * 107.08110 * 179.84361 * 15 14 12 17 17 C 1.50706 * 126.06643 * 180.15358 * 16 15 14 18 18 O 1.42899 * 109.46794 * 65.33056 * 17 16 15 19 19 Si 1.86298 * 109.47365 * 185.33199 * 17 16 15 20 20 C 1.35445 * 107.86822 * 0.41752 * 16 15 14 21 21 N 1.35539 * 108.87278 * 359.74082 * 20 16 15 22 22 C 1.53782 * 87.08215 * 334.56694 * 9 8 6 23 23 H 1.09002 * 109.47181 * 305.51721 * 1 2 3 24 24 H 1.09007 * 109.47226 * 65.51240 * 1 2 3 25 25 H 1.08998 * 109.47528 * 185.50996 * 1 2 3 26 26 H 1.09004 * 109.47283 * 60.00120 * 5 2 1 27 27 H 1.08998 * 109.47236 * 299.99696 * 5 2 1 28 28 H 1.09001 * 113.61464 * 25.51240 * 8 6 5 29 29 H 1.08994 * 113.68577 * 254.62032 * 8 6 5 30 30 H 0.97001 * 120.00384 * 25.00821 * 11 9 8 31 31 H 1.07995 * 126.45998 * 359.97438 * 15 14 12 32 32 H 1.09003 * 109.47152 * 305.33433 * 17 16 15 33 33 H 0.96709 * 113.99749 * 60.00248 * 18 17 16 34 34 H 1.48500 * 110.00150 * 179.97438 * 19 17 16 35 35 H 1.48500 * 109.99782 * 301.32238 * 19 17 16 36 36 H 1.08004 * 125.56961 * 179.75563 * 20 16 15 37 37 H 0.96995 * 125.67680 * 179.97438 * 21 20 16 38 38 H 1.09002 * 113.61513 * 139.98092 * 22 9 8 39 39 H 1.08999 * 113.61337 * 270.88082 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1886 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7984 7 1 4.2200 0.0893 1.4834 8 6 4.1316 -1.3170 3.1894 9 6 5.2304 -2.1234 2.4771 10 1 6.1624 -1.5728 2.3488 11 7 5.4328 -3.4617 3.0375 12 6 6.6209 -4.0809 2.8912 13 8 7.5272 -3.5262 2.2980 14 6 6.8217 -5.4235 3.4469 15 6 7.9756 -6.1738 3.3683 16 6 7.7275 -7.3795 4.0318 17 6 8.7042 -8.5140 4.2052 18 8 9.7924 -8.0844 5.0259 19 14 7.8454 -9.9544 5.0167 20 6 6.4517 -7.3492 4.4857 21 7 5.8903 -6.1660 4.1368 22 6 4.3267 -2.1066 1.2330 23 1 -0.3634 0.5970 0.8365 24 1 -0.3634 0.4260 -0.9353 25 1 -0.3634 -1.0229 0.0987 26 1 1.7609 -1.7370 1.6664 27 1 1.7610 -0.1171 2.4042 28 1 3.3819 -1.9385 3.6791 29 1 4.5179 -0.5302 3.8372 30 1 4.7104 -3.9039 3.5102 31 1 8.8980 -5.8841 2.8872 32 1 9.0833 -8.8195 3.2300 33 1 9.5282 -7.7974 5.9108 34 1 8.7978 -11.0800 5.1929 35 1 7.2964 -9.5420 6.3334 36 1 5.9618 -8.1389 5.0360 37 1 4.9831 -5.8888 4.3393 38 1 4.8704 -1.9562 0.3003 39 1 3.6303 -2.9439 1.1878 There are 55 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 55 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_10543058.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:02 Heat of formation + Delta-G solvation = -70.863978 kcal Electronic energy + Delta-G solvation = -23591.477194 eV Core-core repulsion = 19822.573822 eV Total energy + Delta-G solvation = -3768.903372 eV No. of doubly occupied orbitals = 55 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 315.102 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.49290 -40.99448 -39.36633 -37.96784 -37.79739 -36.99447 -35.06571 -32.59199 -31.31758 -30.56211 -29.98700 -26.77451 -26.64614 -25.00828 -23.01383 -21.44962 -20.98862 -20.65932 -19.84805 -19.72589 -17.94145 -17.59323 -17.44020 -17.03372 -17.00114 -16.54640 -16.46350 -16.15709 -15.90573 -15.65200 -14.96428 -14.83122 -14.49121 -14.39400 -14.04411 -13.90087 -13.86003 -13.65697 -13.48263 -13.46475 -13.22220 -13.06108 -12.99844 -12.66020 -12.44903 -12.07687 -11.94381 -11.79926 -11.53756 -11.31384 -11.05258 -10.47386 -10.25195 -9.96852 -9.29944 -4.82591 -0.90024 0.34633 1.40029 1.55082 1.68642 1.91244 1.93506 2.10343 2.15022 2.23050 2.77901 3.11931 3.33881 3.42658 3.56404 3.61997 3.70631 3.80766 3.98108 4.05590 4.10320 4.17180 4.17544 4.32559 4.36565 4.53009 4.68946 4.70658 4.74358 4.79916 4.90175 4.92562 4.99081 5.02028 5.02595 5.13283 5.45385 5.58600 5.72555 6.35799 6.52890 6.63889 7.05596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.404 3.596 3 O -0.996 6.996 4 O -0.989 6.989 5 C -0.578 4.578 6 C -0.111 4.111 7 H 0.095 0.905 8 C -0.110 4.110 9 C 0.110 3.890 10 H 0.092 0.908 11 N -0.700 5.700 12 C 0.586 3.414 13 O -0.580 6.580 14 C -0.069 4.069 15 C -0.107 4.107 16 C -0.225 4.225 17 C -0.064 4.064 18 O -0.559 6.559 19 Si 0.792 3.208 20 C 0.062 3.938 21 N -0.512 5.512 22 C -0.158 4.158 23 H 0.154 0.846 24 H 0.126 0.874 25 H 0.155 0.845 26 H 0.170 0.830 27 H 0.172 0.828 28 H 0.126 0.874 29 H 0.087 0.913 30 H 0.415 0.585 31 H 0.121 0.879 32 H 0.106 0.894 33 H 0.384 0.616 34 H -0.315 1.315 35 H -0.264 1.264 36 H 0.216 0.784 37 H 0.438 0.562 38 H 0.055 0.945 39 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.539 -4.033 7.266 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.594 3.406 3 O -0.994 6.994 4 O -0.986 6.986 5 C -0.709 4.709 6 C -0.131 4.131 7 H 0.113 0.887 8 C -0.149 4.149 9 C 0.005 3.995 10 H 0.110 0.890 11 N -0.351 5.351 12 C 0.375 3.625 13 O -0.459 6.459 14 C -0.182 4.182 15 C -0.134 4.134 16 C -0.231 4.231 17 C -0.172 4.172 18 O -0.367 6.367 19 Si 0.695 3.305 20 C -0.076 4.076 21 N -0.110 5.110 22 C -0.196 4.196 23 H 0.172 0.828 24 H 0.144 0.856 25 H 0.173 0.827 26 H 0.188 0.812 27 H 0.190 0.810 28 H 0.144 0.856 29 H 0.106 0.894 30 H 0.253 0.747 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.233 0.767 34 H -0.244 1.244 35 H -0.190 1.190 36 H 0.232 0.768 37 H 0.280 0.720 38 H 0.074 0.926 39 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.188 -3.845 6.306 14.251 hybrid contribution 0.169 0.772 0.963 1.246 sum -12.019 -3.074 7.269 14.378 Atomic orbital electron populations 1.30130 1.22426 1.13884 1.13001 1.07872 0.79788 0.74380 0.78606 1.93551 1.81019 1.37185 1.87618 1.93558 1.80784 1.67419 1.56848 1.30123 1.03090 1.16484 1.21197 1.22084 0.92498 0.98690 0.99859 0.88707 1.23348 0.96851 0.99538 0.95114 1.22557 0.98671 0.83066 0.95166 0.88956 1.45635 1.13613 1.18144 1.57747 1.17358 0.82742 0.83941 0.78450 1.90856 1.43885 1.66767 1.44407 1.20083 0.92814 0.94702 1.10574 1.21240 0.96853 0.94372 1.00927 1.19876 0.96656 0.98032 1.08526 1.24803 0.90455 1.01961 0.99949 1.86576 1.34484 1.86104 1.29510 0.94229 0.82724 0.72720 0.80802 1.22386 0.93479 0.89863 1.01872 1.41821 1.13709 1.13485 1.41992 1.23766 0.99464 0.98530 0.97867 0.82810 0.85578 0.82674 0.81193 0.81044 0.85615 0.89423 0.74749 0.86123 0.87635 0.76669 1.24413 1.19000 0.76783 0.71985 0.92590 0.86896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.72 10.62 113.37 1.20 8.92 16 2 S 2.40 -9.24 5.35 -56.49 -0.30 -9.54 16 3 O -1.00 -6.53 18.10 -127.37 -2.30 -8.83 16 4 O -0.99 -5.85 18.10 -127.37 -2.31 -8.15 16 5 C -0.58 7.29 5.64 71.98 0.41 7.69 16 6 C -0.11 0.66 3.65 -10.26 -0.04 0.62 16 7 H 0.09 -0.24 8.13 -2.39 -0.02 -0.26 16 8 C -0.11 1.04 7.39 31.12 0.23 1.27 16 9 C 0.11 -0.21 4.24 45.52 0.19 -0.02 16 10 H 0.09 0.42 7.47 -2.39 -0.02 0.40 16 11 N -0.70 2.51 5.35 -443.99 -2.38 0.14 16 12 C 0.59 3.37 7.79 86.45 0.67 4.04 16 13 O -0.58 -9.66 16.48 -4.33 -0.07 -9.73 16 14 C -0.07 -0.15 7.06 40.35 0.28 0.14 16 15 C -0.11 -0.69 10.59 22.57 0.24 -0.45 16 16 C -0.22 -0.02 5.43 -20.12 -0.11 -0.13 16 17 C -0.06 -0.03 3.02 71.24 0.22 0.19 16 18 O -0.56 -2.88 12.88 -148.98 -1.92 -4.80 16 19 Si 0.79 -3.85 30.60 68.60 2.10 -1.75 16 20 C 0.06 -0.46 10.45 83.47 0.87 0.41 16 21 N -0.51 4.07 5.99 -183.62 -1.10 2.97 16 22 C -0.16 0.34 7.43 31.12 0.23 0.57 16 23 H 0.15 -2.57 8.14 -2.39 -0.02 -2.59 16 24 H 0.13 -1.26 8.14 -2.39 -0.02 -1.28 16 25 H 0.15 -2.64 8.14 -2.39 -0.02 -2.66 16 26 H 0.17 -3.30 7.85 -2.39 -0.02 -3.32 16 27 H 0.17 -3.24 8.14 -2.39 -0.02 -3.26 16 28 H 0.13 -2.02 8.08 -2.39 -0.02 -2.04 16 29 H 0.09 -0.80 8.14 -2.39 -0.02 -0.82 16 30 H 0.41 -5.20 7.86 -92.71 -0.73 -5.93 16 31 H 0.12 1.37 8.06 -2.91 -0.02 1.35 16 32 H 0.11 0.14 7.96 -2.39 -0.02 0.12 16 33 H 0.38 -0.58 8.70 -74.05 -0.64 -1.22 16 34 H -0.32 -1.52 7.11 99.48 0.71 -0.81 16 35 H -0.26 1.07 7.11 99.48 0.71 1.78 16 36 H 0.22 -3.30 6.21 -2.91 -0.02 -3.32 16 37 H 0.44 -7.26 8.19 -92.71 -0.76 -8.02 16 38 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 39 H 0.11 -0.75 7.90 -2.39 -0.02 -0.76 16 Total: 0.00 -44.03 345.62 -4.87 -48.89 By element: Atomic # 1 Polarization: -31.46 SS G_CDS: -0.99 Total: -32.45 kcal Atomic # 6 Polarization: 18.85 SS G_CDS: 4.40 Total: 23.25 kcal Atomic # 7 Polarization: 6.58 SS G_CDS: -3.48 Total: 3.11 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: -6.60 Total: -31.51 kcal Atomic # 14 Polarization: -3.85 SS G_CDS: 2.10 Total: -1.75 kcal Atomic # 16 Polarization: -9.24 SS G_CDS: -0.30 Total: -9.54 kcal Total: -44.03 -4.87 -48.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_10543058.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.972 kcal (2) G-P(sol) polarization free energy of solvation -44.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds