Wall clock time and date at job start Tue Mar 9 2021 12:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42098 * 108.57913 * 2 1 4 4 O 1.42097 * 108.57445 * 228.97609 * 2 1 3 5 5 C 1.81401 * 101.92215 * 114.48915 * 2 1 3 6 6 C 1.52995 * 109.47119 * 179.97438 * 5 2 1 7 7 H 1.09002 * 112.85043 * 314.66508 * 6 5 2 8 8 C 1.53785 * 113.69093 * 85.93625 * 6 5 2 9 9 C 1.53779 * 87.08093 * 139.99088 * 8 6 5 10 10 H 1.09003 * 113.61186 * 89.11185 * 9 8 6 11 11 N 1.46496 * 113.61356 * 220.01890 * 9 8 6 12 12 C 1.34777 * 119.99720 * 252.49922 * 11 9 8 13 13 O 1.21572 * 120.00371 * 359.97438 * 12 11 9 14 14 C 1.47694 * 120.00086 * 179.97438 * 12 11 9 15 15 C 1.39822 * 120.17146 * 179.97438 * 14 12 11 16 16 F 1.35105 * 120.10342 * 0.02654 * 15 14 12 17 17 C 1.38318 * 119.78221 * 179.97438 * 15 14 12 18 18 C 1.38203 * 120.11652 * 0.02562 * 17 15 14 19 19 C 1.38458 * 120.34097 * 359.97438 * 18 17 15 20 20 C 1.50693 * 119.89026 * 180.02562 * 19 18 17 21 21 O 1.42902 * 109.47155 * 120.00072 * 20 19 18 22 22 Si 1.86300 * 109.47441 * 0.02562 * 20 19 18 23 23 C 1.37855 * 120.21670 * 359.72385 * 19 18 17 24 24 C 1.53781 * 113.61293 * 183.47250 * 6 5 2 25 25 H 1.09004 * 109.46859 * 305.51172 * 1 2 3 26 26 H 1.09000 * 109.47216 * 65.51079 * 1 2 3 27 27 H 1.08998 * 109.47398 * 185.51717 * 1 2 3 28 28 H 1.09005 * 109.46913 * 59.99587 * 5 2 1 29 29 H 1.09004 * 109.46949 * 300.00268 * 5 2 1 30 30 H 1.09003 * 113.60734 * 254.54208 * 8 6 5 31 31 H 1.08996 * 113.61146 * 25.43706 * 8 6 5 32 32 H 0.96999 * 120.00578 * 72.49698 * 11 9 8 33 33 H 1.08000 * 119.93737 * 179.97438 * 17 15 14 34 34 H 1.08002 * 119.82794 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47097 * 239.99712 * 20 19 18 36 36 H 0.96695 * 114.00504 * 299.99949 * 21 20 19 37 37 H 1.48493 * 110.00190 * 180.02562 * 22 20 19 38 38 H 1.48508 * 109.99610 * 301.31929 * 22 20 19 39 39 H 1.07999 * 120.06301 * 180.30019 * 23 19 18 40 40 H 1.09005 * 113.61302 * 334.47929 * 24 6 5 41 41 H 1.08996 * 113.61527 * 105.30092 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2666 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7979 7 1 4.2175 -1.2029 0.9153 8 6 4.3317 0.4659 2.3637 9 6 5.2337 -0.4424 3.2159 10 1 6.1636 -0.7226 2.7209 11 7 5.4397 0.0490 4.5806 12 6 6.6318 0.5664 4.9377 13 8 7.5363 0.6250 4.1276 14 6 6.8393 1.0624 6.3134 15 6 8.0748 1.5994 6.6879 16 9 9.0838 1.6672 5.7920 17 6 8.2601 2.0620 7.9782 18 6 7.2278 1.9932 8.8945 19 6 6.0024 1.4623 8.5290 20 6 4.8836 1.3928 9.5361 21 8 3.7685 2.1506 9.0625 22 14 5.4658 2.0949 11.1606 23 6 5.8004 1.0030 7.2450 24 6 4.1313 -1.5088 3.1050 25 1 -0.3633 0.5970 0.8366 26 1 -0.3634 0.4260 -0.9352 27 1 -0.3634 -1.0229 0.0988 28 1 1.7610 -1.7370 1.6664 29 1 1.7610 -0.1172 2.4042 30 1 4.8762 1.0496 1.6215 31 1 3.6381 1.0675 2.9511 32 1 4.7181 0.0020 5.2271 33 1 9.2135 2.4769 8.2702 34 1 7.3775 2.3561 9.9006 35 1 4.5841 0.3540 9.6753 36 1 3.9626 3.0864 8.9160 37 1 4.3717 2.0315 12.1626 38 1 6.6453 1.3358 11.6484 39 1 4.8421 0.5938 6.9612 40 1 3.3829 -1.4470 3.8951 41 1 4.5126 -2.5198 2.9614 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12335834.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:30 Heat of formation + Delta-G solvation = -127.795369 kcal Electronic energy + Delta-G solvation = -27574.678950 eV Core-core repulsion = 23271.052642 eV Total energy + Delta-G solvation = -4303.626307 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.02835 -41.58082 -40.43027 -39.36212 -37.96158 -37.42002 -36.98910 -35.13004 -32.76454 -32.26778 -30.91210 -30.05264 -26.77668 -26.61926 -25.87291 -24.12636 -22.66798 -21.72501 -20.78513 -19.79172 -19.19297 -18.36700 -18.29163 -17.82948 -17.44007 -17.14655 -17.00835 -16.93050 -16.63621 -16.20180 -16.12490 -15.88027 -15.84089 -15.67539 -14.85823 -14.63381 -14.50402 -14.38280 -14.03735 -13.89805 -13.65613 -13.61192 -13.47866 -13.28750 -13.18751 -13.06491 -12.99309 -12.85321 -12.63985 -12.14406 -12.05406 -11.93994 -11.84934 -11.53294 -11.22082 -11.02973 -10.47468 -10.41830 -10.11834 -9.81293 -4.94979 -0.89511 -0.51159 -0.03659 1.32744 1.57562 1.67834 1.92167 1.94972 2.03138 2.46350 2.77915 3.04313 3.12620 3.33348 3.35320 3.42391 3.47097 3.57323 3.63935 3.66426 3.73008 3.99700 4.05062 4.10511 4.10817 4.17142 4.32661 4.45033 4.51991 4.58648 4.69587 4.71150 4.75655 4.79310 4.85305 4.92991 4.94518 4.99340 5.01339 5.12330 5.14519 5.46601 5.58991 6.35300 6.80198 7.03755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.407 3.593 3 O -0.988 6.988 4 O -0.996 6.996 5 C -0.579 4.579 6 C -0.110 4.110 7 H 0.097 0.903 8 C -0.158 4.158 9 C 0.109 3.891 10 H 0.093 0.907 11 N -0.695 5.695 12 C 0.552 3.448 13 O -0.575 6.575 14 C -0.189 4.189 15 C 0.131 3.869 16 F -0.138 7.138 17 C -0.152 4.152 18 C -0.052 4.052 19 C -0.133 4.133 20 C -0.063 4.063 21 O -0.550 6.550 22 Si 0.767 3.233 23 C -0.023 4.023 24 C -0.110 4.110 25 H 0.154 0.846 26 H 0.126 0.874 27 H 0.153 0.847 28 H 0.171 0.829 29 H 0.169 0.831 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.418 0.582 33 H 0.166 0.834 34 H 0.167 0.833 35 H 0.121 0.879 36 H 0.397 0.603 37 H -0.302 1.302 38 H -0.282 1.282 39 H 0.162 0.838 40 H 0.124 0.876 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.241 -0.218 8.963 12.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.596 3.404 3 O -0.985 6.985 4 O -0.993 6.993 5 C -0.710 4.710 6 C -0.130 4.130 7 H 0.115 0.885 8 C -0.196 4.196 9 C 0.004 3.996 10 H 0.111 0.889 11 N -0.347 5.347 12 C 0.340 3.660 13 O -0.455 6.455 14 C -0.193 4.193 15 C 0.110 3.890 16 F -0.117 7.117 17 C -0.171 4.171 18 C -0.069 4.069 19 C -0.134 4.134 20 C -0.174 4.174 21 O -0.358 6.358 22 Si 0.674 3.326 23 C -0.042 4.042 24 C -0.149 4.149 25 H 0.173 0.827 26 H 0.145 0.855 27 H 0.172 0.828 28 H 0.189 0.811 29 H 0.187 0.813 30 H 0.075 0.925 31 H 0.130 0.870 32 H 0.257 0.743 33 H 0.183 0.817 34 H 0.184 0.816 35 H 0.139 0.861 36 H 0.248 0.752 37 H -0.230 1.230 38 H -0.209 1.209 39 H 0.179 0.821 40 H 0.142 0.858 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.140 -0.589 8.518 11.130 hybrid contribution -0.194 -0.685 -0.254 0.756 sum -7.333 -1.275 8.264 11.122 Atomic orbital electron populations 1.30129 1.22455 1.13814 1.13046 1.07809 0.79751 0.74447 0.78398 1.93557 1.80762 1.36720 1.87458 1.93549 1.81022 1.67761 1.57006 1.30131 1.03074 1.16434 1.21383 1.22081 0.92513 0.98371 1.00049 0.88526 1.23761 0.99446 0.96867 0.99562 1.22575 0.98646 0.96331 0.82020 0.88923 1.45705 1.13507 1.61699 1.13837 1.18438 0.82945 0.77423 0.87198 1.90845 1.43663 1.57292 1.53711 1.20069 0.95468 1.08512 0.95234 1.18257 0.84320 0.98263 0.88124 1.91559 1.58749 1.93598 1.67774 1.21383 1.02822 1.02554 0.90340 1.21391 0.91131 0.94499 0.99913 1.20489 0.96271 1.01011 0.95628 1.25067 0.87620 1.00712 1.03983 1.86483 1.34099 1.26518 1.88745 0.93801 0.76652 0.88974 0.73206 1.21194 0.97340 0.94344 0.91277 1.23349 0.96813 0.98143 0.96635 0.82717 0.85522 0.82850 0.81100 0.81323 0.92513 0.86990 0.74310 0.81654 0.81603 0.86149 0.75224 1.22982 1.20903 0.82081 0.85806 0.89318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.13 10.62 113.37 1.20 8.33 16 2 S 2.41 -7.14 5.36 -56.49 -0.30 -7.45 16 3 O -0.99 -6.55 18.10 -127.37 -2.30 -8.85 16 4 O -1.00 -7.25 18.10 -127.37 -2.30 -9.55 16 5 C -0.58 6.46 5.63 71.98 0.41 6.87 16 6 C -0.11 0.49 3.65 -10.27 -0.04 0.45 16 7 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 8 C -0.16 0.06 7.43 31.12 0.23 0.30 16 9 C 0.11 0.00 4.24 45.52 0.19 0.20 16 10 H 0.09 0.56 7.47 -2.39 -0.02 0.54 16 11 N -0.70 0.63 5.31 -443.05 -2.35 -1.72 16 12 C 0.55 4.15 7.77 86.74 0.67 4.83 16 13 O -0.57 -10.32 14.94 -3.94 -0.06 -10.38 16 14 C -0.19 -0.56 5.88 -20.05 -0.12 -0.68 16 15 C 0.13 0.69 7.29 22.67 0.17 0.86 16 16 F -0.14 -1.79 15.55 44.97 0.70 -1.09 16 17 C -0.15 0.36 10.01 22.28 0.22 0.58 16 18 C -0.05 0.36 8.66 22.31 0.19 0.55 16 19 C -0.13 0.90 5.39 -19.90 -0.11 0.79 16 20 C -0.06 0.53 2.82 71.23 0.20 0.73 16 21 O -0.55 4.39 12.76 -148.98 -1.90 2.49 16 22 Si 0.77 -6.29 29.77 68.60 2.04 -4.25 16 23 C -0.02 0.11 9.09 22.52 0.20 0.31 16 24 C -0.11 0.83 7.39 31.12 0.23 1.06 16 25 H 0.15 -2.47 8.14 -2.39 -0.02 -2.49 16 26 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 27 H 0.15 -2.41 8.14 -2.39 -0.02 -2.43 16 28 H 0.17 -2.98 8.14 -2.39 -0.02 -3.00 16 29 H 0.17 -2.97 7.88 -2.39 -0.02 -2.99 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.11 -0.49 7.92 -2.39 -0.02 -0.51 16 32 H 0.42 -3.60 6.76 -92.71 -0.63 -4.22 16 33 H 0.17 -1.03 8.06 -2.91 -0.02 -1.05 16 34 H 0.17 -2.04 4.86 -2.91 -0.01 -2.05 16 35 H 0.12 -1.02 7.96 -2.39 -0.02 -1.04 16 36 H 0.40 -6.02 8.70 -74.06 -0.64 -6.67 16 37 H -0.30 -0.14 7.11 99.48 0.71 0.57 16 38 H -0.28 0.99 7.11 99.48 0.71 1.69 16 39 H 0.16 -1.62 6.41 -2.91 -0.02 -1.64 16 40 H 0.12 -1.67 8.08 -2.38 -0.02 -1.69 16 41 H 0.09 -0.68 8.14 -2.39 -0.02 -0.69 16 Total: 0.00 -41.38 361.03 -2.96 -44.34 By element: Atomic # 1 Polarization: -28.59 SS G_CDS: -0.14 Total: -28.73 kcal Atomic # 6 Polarization: 21.52 SS G_CDS: 3.66 Total: 25.19 kcal Atomic # 7 Polarization: 0.63 SS G_CDS: -2.35 Total: -1.72 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -6.57 Total: -26.29 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.70 Total: -1.09 kcal Atomic # 14 Polarization: -6.29 SS G_CDS: 2.04 Total: -4.25 kcal Atomic # 16 Polarization: -7.14 SS G_CDS: -0.30 Total: -7.45 kcal Total: -41.38 -2.96 -44.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12335834.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.453 kcal (2) G-P(sol) polarization free energy of solvation -41.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds