Wall clock time and date at job start Tue Mar 9 2021 12:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 108.57851 * 2 1 4 4 O 1.42099 * 108.58056 * 228.97221 * 2 1 3 5 5 C 1.81398 * 101.91769 * 114.48620 * 2 1 3 6 6 C 1.53003 * 109.46763 * 180.02562 * 5 2 1 7 7 H 1.08995 * 112.85066 * 43.80558 * 6 5 2 8 8 C 1.53781 * 113.61222 * 174.99877 * 6 5 2 9 9 C 1.53780 * 87.08164 * 140.06309 * 8 6 5 10 10 H 1.09009 * 113.61645 * 89.20091 * 9 8 6 11 11 N 1.46500 * 113.61701 * 220.01749 * 9 8 6 12 12 C 1.34772 * 120.00076 * 205.00060 * 11 9 8 13 13 O 1.21591 * 120.00191 * 0.02562 * 12 11 9 14 14 C 1.47584 * 119.99969 * 180.02562 * 12 11 9 15 15 C 1.40197 * 119.83069 * 0.02562 * 14 12 11 16 16 C 1.36241 * 120.37811 * 180.02562 * 15 14 12 17 17 C 1.39875 * 119.95637 * 359.97438 * 16 15 14 18 18 C 1.46259 * 133.84122 * 179.66588 * 17 16 15 19 19 C 1.50701 * 126.48245 * 0.25104 * 18 17 16 20 20 O 1.42905 * 109.47471 * 74.99416 * 19 18 17 21 21 Si 1.86301 * 109.47272 * 194.99912 * 19 18 17 22 22 C 1.34447 * 107.03764 * 179.88477 * 18 17 16 23 23 N 1.36570 * 109.98458 * 0.40929 * 22 18 17 24 24 C 1.37831 * 109.85789 * 359.73301 * 23 22 18 25 25 C 1.38639 * 133.37686 * 179.97438 * 24 23 22 26 26 C 1.53774 * 87.08252 * 334.56824 * 9 8 6 27 27 H 1.08996 * 109.46986 * 305.51645 * 1 2 3 28 28 H 1.09008 * 109.46848 * 65.51361 * 1 2 3 29 29 H 1.08999 * 109.47064 * 185.50909 * 1 2 3 30 30 H 1.08995 * 109.47375 * 60.00141 * 5 2 1 31 31 H 1.09004 * 109.47329 * 299.99428 * 5 2 1 32 32 H 1.09005 * 113.61770 * 25.51701 * 8 6 5 33 33 H 1.08998 * 113.69529 * 254.62342 * 8 6 5 34 34 H 0.97002 * 119.99780 * 25.00297 * 11 9 8 35 35 H 1.08001 * 119.81467 * 359.97438 * 15 14 12 36 36 H 1.07995 * 120.01671 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.46913 * 314.99825 * 19 18 17 38 38 H 0.96694 * 114.00173 * 179.97438 * 20 19 18 39 39 H 1.48500 * 109.99898 * 299.99979 * 21 19 18 40 40 H 1.48497 * 109.99979 * 61.31641 * 21 19 18 41 41 H 1.08001 * 125.01442 * 180.13525 * 22 18 17 42 42 H 0.97001 * 125.06994 * 179.70541 * 23 22 18 43 43 H 1.08007 * 120.16716 * 0.05504 * 25 24 23 44 44 H 1.08999 * 113.62123 * 139.97770 * 26 9 8 45 45 H 1.09002 * 113.61528 * 270.88237 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6152 6 6 3.7054 -0.8184 1.7985 7 1 4.2199 0.0894 1.4835 8 6 4.1315 -1.3168 3.1894 9 6 5.2304 -2.1232 2.4773 10 1 6.1624 -1.5727 2.3491 11 7 5.4328 -3.4616 3.0377 12 6 6.6227 -4.0784 2.8963 13 8 7.5284 -3.5240 2.3041 14 6 6.8264 -5.4269 3.4603 15 6 5.7795 -6.0632 4.1421 16 6 5.9555 -7.3078 4.6676 17 6 7.1862 -7.9575 4.5276 18 6 7.7019 -9.2554 4.9620 19 6 6.9482 -10.3050 5.7374 20 8 6.0237 -10.9655 4.8706 21 14 8.1502 -11.5497 6.4278 22 6 8.9729 -9.3384 4.5316 23 7 9.3156 -8.1965 3.8655 24 6 8.2455 -7.3281 3.8435 25 6 8.0578 -6.0615 3.3119 26 6 4.3268 -2.1065 1.2331 27 1 -0.3633 0.5970 0.8364 28 1 -0.3633 0.4260 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7610 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4043 32 1 3.3818 -1.9384 3.6792 33 1 4.5178 -0.5300 3.8373 34 1 4.7103 -3.9038 3.5104 35 1 4.8283 -5.5636 4.2520 36 1 5.1452 -7.7923 5.1920 37 1 6.4048 -9.8321 6.5555 38 1 5.5030 -11.6558 5.3036 39 1 8.8973 -12.2015 5.3224 40 1 9.0971 -10.8807 7.3557 41 1 9.6280 -10.1817 4.6930 42 1 10.1830 -8.0223 3.4676 43 1 8.8620 -5.5693 2.7852 44 1 4.8704 -1.9561 0.3005 45 1 3.6304 -2.9439 1.1880 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:39 Heat of formation + Delta-G solvation = -41.079773 kcal Electronic energy + Delta-G solvation = -29449.991015 eV Core-core repulsion = 25142.163142 eV Total energy + Delta-G solvation = -4307.827872 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 2.61 seconds Orbital eigenvalues (eV) -42.49732 -41.24300 -39.66544 -37.96123 -37.80244 -37.46257 -36.99501 -34.88210 -33.36982 -31.54689 -30.79082 -30.67566 -30.04450 -26.87115 -26.52027 -25.39438 -23.65032 -23.37151 -21.49254 -20.88613 -20.56586 -19.89722 -19.23919 -18.38349 -18.25407 -17.95737 -17.58521 -17.18896 -17.09120 -16.79055 -16.24315 -15.98137 -15.84380 -15.63785 -15.38307 -15.07812 -14.88575 -14.77339 -14.71911 -14.56203 -14.34934 -14.26338 -13.84262 -13.76787 -13.60304 -13.32146 -13.23211 -13.05238 -12.96279 -12.78899 -12.59918 -12.53581 -12.18339 -12.09432 -12.05703 -11.92220 -11.57248 -11.26102 -10.86384 -10.77101 -10.25075 -10.05858 -9.36866 -8.83764 -5.06235 -1.08197 -0.27294 0.38119 1.25436 1.30967 1.61144 1.68988 1.85204 1.91774 1.99833 2.21431 2.59284 2.89637 2.92537 3.22846 3.27123 3.46821 3.50421 3.55593 3.63767 3.68724 3.73316 3.77254 3.78721 3.93308 3.97488 4.05615 4.08419 4.21980 4.28021 4.36362 4.44440 4.53935 4.55039 4.58361 4.61303 4.63563 4.72302 4.83573 4.97196 4.98844 5.12067 5.22943 5.41279 5.42519 5.53625 5.58322 5.96477 6.33398 6.49462 6.68086 7.24398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.938 6.938 4 O -0.933 6.933 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.131 4.131 9 C 0.122 3.878 10 H 0.121 0.879 11 N -0.716 5.716 12 C 0.565 3.435 13 O -0.536 6.536 14 C -0.121 4.121 15 C -0.113 4.113 16 C -0.070 4.070 17 C -0.062 4.062 18 C -0.164 4.164 19 C -0.033 4.033 20 O -0.547 6.547 21 Si 0.684 3.316 22 C 0.072 3.928 23 N -0.583 5.583 24 C 0.082 3.918 25 C -0.055 4.055 26 C -0.153 4.153 27 H 0.128 0.872 28 H 0.130 0.870 29 H 0.128 0.872 30 H 0.134 0.866 31 H 0.137 0.863 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.402 0.598 35 H 0.126 0.874 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.379 0.621 39 H -0.254 1.254 40 H -0.256 1.256 41 H 0.170 0.830 42 H 0.423 0.577 43 H 0.137 0.863 44 H 0.085 0.915 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.364 -4.717 7.058 10.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.599 3.401 3 O -0.935 6.935 4 O -0.930 6.930 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.129 0.871 8 C -0.170 4.170 9 C 0.017 3.983 10 H 0.139 0.861 11 N -0.367 5.367 12 C 0.353 3.647 13 O -0.413 6.413 14 C -0.126 4.126 15 C -0.133 4.133 16 C -0.089 4.089 17 C -0.067 4.067 18 C -0.171 4.171 19 C -0.145 4.145 20 O -0.353 6.353 21 Si 0.585 3.415 22 C -0.056 4.056 23 N -0.185 5.185 24 C -0.024 4.024 25 C -0.076 4.076 26 C -0.192 4.192 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.155 0.845 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.238 0.762 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.089 0.911 38 H 0.226 0.774 39 H -0.178 1.178 40 H -0.180 1.180 41 H 0.187 0.813 42 H 0.261 0.739 43 H 0.155 0.845 44 H 0.104 0.896 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.908 -3.816 5.552 7.337 hybrid contribution -0.759 0.035 0.484 0.901 sum -3.667 -3.781 6.035 8.010 Atomic orbital electron populations 1.30302 1.26884 1.11598 1.12010 1.07968 0.78315 0.75951 0.77831 1.93622 1.79016 1.34429 1.86465 1.93625 1.78811 1.66865 1.53723 1.30296 1.04821 1.14193 1.23540 1.22073 0.90756 1.00044 0.99375 0.87107 1.23377 0.97870 0.99897 0.95846 1.22511 0.98803 0.83177 0.93771 0.86083 1.45837 1.14456 1.18120 1.58307 1.18185 0.82278 0.85232 0.79013 1.90799 1.41986 1.66525 1.42036 1.19431 0.94714 0.94839 1.03583 1.20669 0.98040 0.95444 0.99141 1.20169 0.95537 0.93977 0.99200 1.19150 0.93742 0.93866 0.99934 1.19619 0.93867 0.95362 1.08279 1.23934 0.98226 0.97812 0.94501 1.86542 1.55403 1.54664 1.38680 0.95098 0.80949 0.83633 0.81825 1.21658 0.96874 0.90376 0.96740 1.41683 1.13524 1.14236 1.49082 1.18077 0.88314 0.93013 1.02977 1.20083 0.97501 0.91208 0.98835 1.23705 0.99267 0.96830 0.99350 0.85322 0.85105 0.85313 0.84756 0.84498 0.88931 0.89801 0.76228 0.85585 0.85130 0.91108 0.77356 1.17811 1.18043 0.81308 0.73936 0.84508 0.89588 0.88779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 2.88 10.62 101.05 1.07 3.95 16 2 S 2.42 -3.50 5.35 -107.50 -0.58 -4.07 16 3 O -0.94 -2.64 18.10 -57.83 -1.05 -3.69 16 4 O -0.93 -2.51 18.10 -57.83 -1.05 -3.55 16 5 C -0.60 2.55 5.64 37.16 0.21 2.76 16 6 C -0.10 0.20 3.65 -89.80 -0.33 -0.13 16 7 H 0.11 -0.17 8.13 -51.93 -0.42 -0.60 16 8 C -0.13 0.37 7.39 -25.92 -0.19 0.18 16 9 C 0.12 -0.03 4.24 -67.12 -0.28 -0.32 16 10 H 0.12 0.17 7.46 -51.92 -0.39 -0.22 16 11 N -0.72 0.09 5.30 -54.04 -0.29 -0.20 16 12 C 0.56 1.81 7.76 -12.45 -0.10 1.71 16 13 O -0.54 -3.68 15.91 5.29 0.08 -3.60 16 14 C -0.12 -0.29 5.87 -104.95 -0.62 -0.90 16 15 C -0.11 -0.04 9.46 -39.56 -0.37 -0.42 16 16 C -0.07 -0.09 10.03 -39.69 -0.40 -0.49 16 17 C -0.06 -0.18 6.35 -105.05 -0.67 -0.85 16 18 C -0.16 -0.36 5.60 -102.74 -0.58 -0.93 16 19 C -0.03 0.01 3.05 36.01 0.11 0.12 16 20 O -0.55 -0.01 12.86 -35.23 -0.45 -0.46 16 21 Si 0.68 -1.31 30.80 -169.99 -5.24 -6.55 16 22 C 0.07 0.08 10.43 -16.78 -0.18 -0.09 16 23 N -0.58 -0.44 6.07 -10.68 -0.06 -0.51 16 24 C 0.08 0.22 7.26 -84.00 -0.61 -0.39 16 25 C -0.06 -0.16 9.61 -39.03 -0.37 -0.54 16 26 C -0.15 0.07 7.43 -25.92 -0.19 -0.12 16 27 H 0.13 -0.78 8.14 -51.93 -0.42 -1.21 16 28 H 0.13 -0.53 8.14 -51.92 -0.42 -0.95 16 29 H 0.13 -0.79 8.14 -51.92 -0.42 -1.21 16 30 H 0.13 -0.87 7.85 -51.93 -0.41 -1.27 16 31 H 0.14 -0.90 8.14 -51.92 -0.42 -1.32 16 32 H 0.09 -0.42 8.08 -51.93 -0.42 -0.83 16 33 H 0.08 -0.25 8.14 -51.93 -0.42 -0.67 16 34 H 0.40 -1.19 6.72 -40.82 -0.27 -1.47 16 35 H 0.13 -0.36 6.36 -52.49 -0.33 -0.70 16 36 H 0.13 -0.07 8.06 -52.49 -0.42 -0.49 16 37 H 0.07 -0.13 7.96 -51.93 -0.41 -0.54 16 38 H 0.38 -1.94 8.74 45.56 0.40 -1.54 16 39 H -0.25 -0.19 7.03 56.52 0.40 0.21 16 40 H -0.26 -0.18 7.11 56.52 0.40 0.22 16 41 H 0.17 -0.15 6.31 -52.49 -0.33 -0.48 16 42 H 0.42 -0.91 8.96 -40.82 -0.37 -1.27 16 43 H 0.14 0.37 7.62 -52.48 -0.40 -0.03 16 44 H 0.09 0.10 8.14 -51.93 -0.42 -0.33 16 45 H 0.09 -0.14 7.90 -51.93 -0.41 -0.55 16 LS Contribution 390.03 15.07 5.88 5.88 Total: 0.00 -16.29 390.03 -12.17 -28.46 By element: Atomic # 1 Polarization: -9.32 SS G_CDS: -5.93 Total: -15.25 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -3.49 Total: 3.55 kcal Atomic # 7 Polarization: -0.35 SS G_CDS: -0.35 Total: -0.70 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: -2.46 Total: -11.31 kcal Atomic # 14 Polarization: -1.31 SS G_CDS: -5.24 Total: -6.55 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -0.58 Total: -4.07 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -16.29 -12.17 -28.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.621 kcal (2) G-P(sol) polarization free energy of solvation -16.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.61 seconds