Wall clock time and date at job start Tue Mar 9 2021 12:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42101 * 108.57851 * 2 1 4 4 O 1.42099 * 108.58056 * 228.97221 * 2 1 3 5 5 C 1.81398 * 101.91769 * 114.48620 * 2 1 3 6 6 C 1.53003 * 109.46763 * 180.02562 * 5 2 1 7 7 H 1.08995 * 112.85066 * 43.80558 * 6 5 2 8 8 C 1.53781 * 113.61222 * 174.99877 * 6 5 2 9 9 C 1.53780 * 87.08164 * 140.06309 * 8 6 5 10 10 H 1.09009 * 113.61645 * 89.20091 * 9 8 6 11 11 N 1.46500 * 113.61701 * 220.01749 * 9 8 6 12 12 C 1.34772 * 120.00076 * 205.00060 * 11 9 8 13 13 O 1.21591 * 120.00191 * 0.02562 * 12 11 9 14 14 C 1.47584 * 119.99969 * 180.02562 * 12 11 9 15 15 C 1.40197 * 119.83069 * 0.02562 * 14 12 11 16 16 C 1.36241 * 120.37811 * 180.02562 * 15 14 12 17 17 C 1.39875 * 119.95637 * 359.97438 * 16 15 14 18 18 C 1.46259 * 133.84122 * 179.66588 * 17 16 15 19 19 C 1.50701 * 126.48245 * 0.25104 * 18 17 16 20 20 O 1.42905 * 109.47471 * 74.99416 * 19 18 17 21 21 Si 1.86301 * 109.47272 * 194.99912 * 19 18 17 22 22 C 1.34447 * 107.03764 * 179.88477 * 18 17 16 23 23 N 1.36570 * 109.98458 * 0.40929 * 22 18 17 24 24 C 1.37831 * 109.85789 * 359.73301 * 23 22 18 25 25 C 1.38639 * 133.37686 * 179.97438 * 24 23 22 26 26 C 1.53774 * 87.08252 * 334.56824 * 9 8 6 27 27 H 1.08996 * 109.46986 * 305.51645 * 1 2 3 28 28 H 1.09008 * 109.46848 * 65.51361 * 1 2 3 29 29 H 1.08999 * 109.47064 * 185.50909 * 1 2 3 30 30 H 1.08995 * 109.47375 * 60.00141 * 5 2 1 31 31 H 1.09004 * 109.47329 * 299.99428 * 5 2 1 32 32 H 1.09005 * 113.61770 * 25.51701 * 8 6 5 33 33 H 1.08998 * 113.69529 * 254.62342 * 8 6 5 34 34 H 0.97002 * 119.99780 * 25.00297 * 11 9 8 35 35 H 1.08001 * 119.81467 * 359.97438 * 15 14 12 36 36 H 1.07995 * 120.01671 * 179.97438 * 16 15 14 37 37 H 1.09003 * 109.46913 * 314.99825 * 19 18 17 38 38 H 0.96694 * 114.00173 * 179.97438 * 20 19 18 39 39 H 1.48500 * 109.99898 * 299.99979 * 21 19 18 40 40 H 1.48497 * 109.99979 * 61.31641 * 21 19 18 41 41 H 1.08001 * 125.01442 * 180.13525 * 22 18 17 42 42 H 0.97001 * 125.06994 * 179.70541 * 23 22 18 43 43 H 1.08007 * 120.16716 * 0.05504 * 25 24 23 44 44 H 1.08999 * 113.62123 * 139.97770 * 26 9 8 45 45 H 1.09002 * 113.61528 * 270.88237 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1886 -0.7356 1.6152 6 6 3.7054 -0.8184 1.7985 7 1 4.2199 0.0894 1.4835 8 6 4.1315 -1.3168 3.1894 9 6 5.2304 -2.1232 2.4773 10 1 6.1624 -1.5727 2.3491 11 7 5.4328 -3.4616 3.0377 12 6 6.6227 -4.0784 2.8963 13 8 7.5284 -3.5240 2.3041 14 6 6.8264 -5.4269 3.4603 15 6 5.7795 -6.0632 4.1421 16 6 5.9555 -7.3078 4.6676 17 6 7.1862 -7.9575 4.5276 18 6 7.7019 -9.2554 4.9620 19 6 6.9482 -10.3050 5.7374 20 8 6.0237 -10.9655 4.8706 21 14 8.1502 -11.5497 6.4278 22 6 8.9729 -9.3384 4.5316 23 7 9.3156 -8.1965 3.8655 24 6 8.2455 -7.3281 3.8435 25 6 8.0578 -6.0615 3.3119 26 6 4.3268 -2.1065 1.2331 27 1 -0.3633 0.5970 0.8364 28 1 -0.3633 0.4260 -0.9353 29 1 -0.3633 -1.0229 0.0987 30 1 1.7610 -1.7369 1.6665 31 1 1.7610 -0.1170 2.4043 32 1 3.3818 -1.9384 3.6792 33 1 4.5178 -0.5300 3.8373 34 1 4.7103 -3.9038 3.5104 35 1 4.8283 -5.5636 4.2520 36 1 5.1452 -7.7923 5.1920 37 1 6.4048 -9.8321 6.5555 38 1 5.5030 -11.6558 5.3036 39 1 8.8973 -12.2015 5.3224 40 1 9.0971 -10.8807 7.3557 41 1 9.6280 -10.1817 4.6930 42 1 10.1830 -8.0223 3.4676 43 1 8.8620 -5.5693 2.7852 44 1 4.8704 -1.9561 0.3005 45 1 3.6304 -2.9439 1.1880 There are 64 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 64 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12335838.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:56:38 Heat of formation + Delta-G solvation = -51.359863 kcal Electronic energy + Delta-G solvation = -29450.436793 eV Core-core repulsion = 25142.163142 eV Total energy + Delta-G solvation = -4308.273651 eV No. of doubly occupied orbitals = 64 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 365.118 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.57046 -41.31605 -39.71059 -37.96483 -37.83384 -37.47226 -36.99269 -34.98839 -33.43361 -31.44411 -30.84788 -30.51128 -29.90156 -26.74732 -26.50332 -25.44634 -23.72637 -23.36320 -21.62086 -20.84803 -20.57770 -19.79159 -19.30612 -18.37382 -18.21664 -17.92861 -17.49529 -17.21962 -16.99901 -16.78839 -16.25451 -16.08341 -15.85234 -15.65516 -15.44790 -15.08137 -14.92843 -14.79602 -14.65554 -14.59786 -14.03623 -13.89769 -13.84664 -13.62553 -13.44936 -13.25426 -13.22610 -13.05967 -12.99600 -12.78451 -12.58140 -12.57271 -12.16506 -12.02580 -11.93999 -11.92426 -11.49950 -11.17638 -11.00269 -10.88075 -10.15930 -10.14487 -9.46845 -8.91455 -4.91610 -0.89608 -0.42000 0.30792 1.22068 1.37890 1.71061 1.80578 1.83889 1.92732 2.01904 2.17558 2.77817 2.79923 3.12467 3.36397 3.44065 3.48476 3.56892 3.63428 3.67490 3.72983 3.76715 4.03154 4.05422 4.07058 4.10722 4.17855 4.21383 4.29836 4.34052 4.42699 4.49510 4.55562 4.72138 4.73110 4.75981 4.83285 4.90616 4.95662 4.99503 5.04043 5.14116 5.18779 5.33556 5.39506 5.51267 5.52653 5.88649 6.34739 6.45750 7.04116 7.11697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.403 3.597 3 O -0.996 6.996 4 O -0.990 6.990 5 C -0.578 4.578 6 C -0.110 4.110 7 H 0.096 0.904 8 C -0.110 4.110 9 C 0.109 3.891 10 H 0.093 0.907 11 N -0.696 5.696 12 C 0.560 3.440 13 O -0.586 6.586 14 C -0.131 4.131 15 C -0.104 4.104 16 C -0.075 4.075 17 C -0.082 4.082 18 C -0.187 4.187 19 C -0.043 4.043 20 O -0.567 6.567 21 Si 0.779 3.221 22 C 0.065 3.935 23 N -0.581 5.581 24 C 0.066 3.934 25 C -0.072 4.072 26 C -0.159 4.159 27 H 0.154 0.846 28 H 0.126 0.874 29 H 0.155 0.845 30 H 0.169 0.831 31 H 0.173 0.827 32 H 0.125 0.875 33 H 0.089 0.911 34 H 0.419 0.581 35 H 0.163 0.837 36 H 0.153 0.847 37 H 0.087 0.913 38 H 0.400 0.600 39 H -0.292 1.292 40 H -0.292 1.292 41 H 0.185 0.815 42 H 0.432 0.568 43 H 0.126 0.874 44 H 0.055 0.945 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.681 -5.860 9.517 14.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.592 3.408 3 O -0.993 6.993 4 O -0.987 6.987 5 C -0.710 4.710 6 C -0.130 4.130 7 H 0.114 0.886 8 C -0.149 4.149 9 C 0.004 3.996 10 H 0.111 0.889 11 N -0.348 5.348 12 C 0.349 3.651 13 O -0.467 6.467 14 C -0.135 4.135 15 C -0.123 4.123 16 C -0.093 4.093 17 C -0.087 4.087 18 C -0.194 4.194 19 C -0.153 4.153 20 O -0.377 6.377 21 Si 0.684 3.316 22 C -0.064 4.064 23 N -0.184 5.184 24 C -0.041 4.041 25 C -0.094 4.094 26 C -0.198 4.198 27 H 0.173 0.827 28 H 0.145 0.855 29 H 0.173 0.827 30 H 0.187 0.813 31 H 0.191 0.809 32 H 0.143 0.857 33 H 0.107 0.893 34 H 0.258 0.742 35 H 0.181 0.819 36 H 0.170 0.830 37 H 0.105 0.895 38 H 0.251 0.749 39 H -0.219 1.219 40 H -0.220 1.220 41 H 0.201 0.799 42 H 0.272 0.728 43 H 0.144 0.856 44 H 0.074 0.926 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.265 -4.949 7.995 11.299 hybrid contribution 0.258 0.362 -0.274 0.522 sum -6.008 -4.587 7.722 10.805 Atomic orbital electron populations 1.30127 1.22350 1.13900 1.13049 1.07902 0.79852 0.74402 0.78615 1.93549 1.81024 1.37100 1.87612 1.93557 1.80806 1.67428 1.56882 1.30131 1.03171 1.16466 1.21211 1.22082 0.92447 0.98626 0.99882 0.88604 1.23352 0.96909 0.99549 0.95095 1.22567 0.98660 0.83207 0.95123 0.88852 1.45709 1.13808 1.17953 1.57301 1.18432 0.82638 0.85515 0.78517 1.90772 1.43782 1.67706 1.44438 1.19523 0.95258 0.94559 1.04195 1.20985 0.98666 0.95100 0.97554 1.20487 0.95507 0.94194 0.99130 1.19565 0.94505 0.94473 1.00204 1.20106 0.94468 0.95938 1.08919 1.24152 0.98875 0.97902 0.94348 1.86485 1.55831 1.55665 1.39708 0.94066 0.78335 0.80840 0.78312 1.22007 0.97223 0.90703 0.96497 1.41742 1.13759 1.13952 1.48946 1.18205 0.89194 0.93164 1.03509 1.20128 0.97924 0.91717 0.99613 1.23772 0.99548 0.98561 0.97891 0.82730 0.85519 0.82705 0.81305 0.80944 0.85691 0.89271 0.74185 0.81913 0.82984 0.89506 0.74884 1.21878 1.21952 0.79864 0.72800 0.85646 0.92589 0.87059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.97 10.62 113.37 1.20 8.18 16 2 S 2.40 -6.11 5.35 -56.49 -0.30 -6.41 16 3 O -1.00 -7.47 18.10 -127.37 -2.31 -9.78 16 4 O -0.99 -7.21 18.10 -127.37 -2.30 -9.51 16 5 C -0.58 6.35 5.64 71.98 0.41 6.76 16 6 C -0.11 0.48 3.65 -10.27 -0.04 0.44 16 7 H 0.10 -0.13 8.13 -2.39 -0.02 -0.15 16 8 C -0.11 0.83 7.39 31.12 0.23 1.06 16 9 C 0.11 0.01 4.24 45.51 0.19 0.20 16 10 H 0.09 0.54 7.46 -2.38 -0.02 0.52 16 11 N -0.70 0.37 5.30 -443.16 -2.35 -1.98 16 12 C 0.56 4.41 7.76 86.71 0.67 5.08 16 13 O -0.59 -9.97 15.91 -4.00 -0.06 -10.03 16 14 C -0.13 -0.74 5.87 -20.07 -0.12 -0.86 16 15 C -0.10 0.04 9.46 22.28 0.21 0.25 16 16 C -0.07 -0.12 10.03 22.20 0.22 0.11 16 17 C -0.08 -0.51 6.35 -20.14 -0.13 -0.64 16 18 C -0.19 -0.85 5.60 -18.65 -0.10 -0.95 16 19 C -0.04 0.07 3.05 71.24 0.22 0.29 16 20 O -0.57 0.61 12.86 -148.98 -1.92 -1.30 16 21 Si 0.78 -3.37 30.80 68.60 2.11 -1.26 16 22 C 0.06 0.20 10.43 83.09 0.87 1.07 16 23 N -0.58 -1.78 6.07 -187.72 -1.14 -2.92 16 24 C 0.07 0.46 7.26 38.95 0.28 0.74 16 25 C -0.07 -0.59 9.61 22.63 0.22 -0.37 16 26 C -0.16 0.02 7.43 31.12 0.23 0.26 16 27 H 0.15 -2.42 8.14 -2.39 -0.02 -2.44 16 28 H 0.13 -1.15 8.14 -2.39 -0.02 -1.17 16 29 H 0.15 -2.43 8.14 -2.39 -0.02 -2.45 16 30 H 0.17 -2.94 7.85 -2.39 -0.02 -2.96 16 31 H 0.17 -3.02 8.14 -2.39 -0.02 -3.04 16 32 H 0.12 -1.71 8.08 -2.38 -0.02 -1.73 16 33 H 0.09 -0.69 8.14 -2.39 -0.02 -0.71 16 34 H 0.42 -3.45 6.72 -92.71 -0.62 -4.07 16 35 H 0.16 -1.45 6.36 -2.91 -0.02 -1.47 16 36 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 37 H 0.09 -0.45 7.96 -2.39 -0.02 -0.47 16 38 H 0.40 -4.76 8.74 -74.06 -0.65 -5.40 16 39 H -0.29 -0.53 7.03 99.48 0.70 0.17 16 40 H -0.29 -0.47 7.11 99.48 0.71 0.24 16 41 H 0.18 -0.19 6.31 -2.91 -0.02 -0.21 16 42 H 0.43 -1.06 8.96 -92.71 -0.83 -1.89 16 43 H 0.13 1.15 7.62 -2.91 -0.02 1.13 16 44 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.11 -0.45 7.90 -2.39 -0.02 -0.47 16 Total: 0.00 -43.67 390.03 -4.71 -48.38 By element: Atomic # 1 Polarization: -25.79 SS G_CDS: -1.01 Total: -26.80 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 4.57 Total: 21.61 kcal Atomic # 7 Polarization: -1.40 SS G_CDS: -3.49 Total: -4.89 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -6.59 Total: -30.63 kcal Atomic # 14 Polarization: -3.37 SS G_CDS: 2.11 Total: -1.26 kcal Atomic # 16 Polarization: -6.11 SS G_CDS: -0.30 Total: -6.41 kcal Total: -43.67 -4.71 -48.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12335838.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.985 kcal (2) G-P(sol) polarization free energy of solvation -43.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds