Wall clock time and date at job start Tue Mar 9 2021 12:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.57735 * 2 1 4 4 O 1.42100 * 108.57816 * 228.97349 * 2 1 3 5 5 C 1.81397 * 101.91800 * 114.48669 * 2 1 3 6 6 C 1.53002 * 109.47113 * 180.02562 * 5 2 1 7 7 H 1.09007 * 112.84728 * 316.19463 * 6 5 2 8 8 C 1.53775 * 113.69309 * 87.46179 * 6 5 2 9 9 C 1.53774 * 87.08265 * 139.99537 * 8 6 5 10 10 H 1.08999 * 113.69232 * 89.12797 * 9 8 6 11 11 N 1.46504 * 113.61610 * 220.02034 * 9 8 6 12 12 C 1.34778 * 120.00196 * 252.49646 * 11 9 8 13 13 O 1.21547 * 119.99926 * 0.02562 * 12 11 9 14 14 C 1.47848 * 119.99909 * 180.02562 * 12 11 9 15 15 C 1.39545 * 120.14179 * 0.02562 * 14 12 11 16 16 C 1.38062 * 119.84326 * 179.97438 * 15 14 12 17 17 Br 1.89099 * 119.94088 * 180.02562 * 16 15 14 18 18 C 1.38429 * 120.12600 * 0.02562 * 16 15 14 19 19 C 1.38365 * 120.27880 * 359.97438 * 18 16 15 20 20 C 1.50703 * 119.91902 * 180.02562 * 19 18 16 21 21 O 1.42905 * 109.46795 * 245.00079 * 20 19 18 22 22 Si 1.86301 * 109.47131 * 4.99770 * 20 19 18 23 23 C 1.37943 * 120.15497 * 0.02562 * 19 18 16 24 24 C 1.53777 * 87.08173 * 334.56871 * 9 8 6 25 25 H 1.09003 * 109.47297 * 305.51613 * 1 2 3 26 26 H 1.09004 * 109.47110 * 65.50850 * 1 2 3 27 27 H 1.08994 * 109.47459 * 185.51201 * 1 2 3 28 28 H 1.09000 * 109.47395 * 60.00124 * 5 2 1 29 29 H 1.09000 * 109.47528 * 299.99943 * 5 2 1 30 30 H 1.09004 * 113.61422 * 25.44850 * 8 6 5 31 31 H 1.09000 * 113.62052 * 254.54230 * 8 6 5 32 32 H 0.97003 * 119.99852 * 72.50130 * 11 9 8 33 33 H 1.08003 * 120.07903 * 359.96475 * 15 14 12 34 34 H 1.07997 * 119.86000 * 180.27123 * 18 16 15 35 35 H 1.08994 * 109.47272 * 125.00216 * 20 19 18 36 36 H 0.96694 * 114.00332 * 60.00007 * 21 20 19 37 37 H 1.48499 * 109.99911 * 58.68006 * 22 20 19 38 38 H 1.48502 * 109.99963 * 179.97438 * 22 20 19 39 39 H 1.08009 * 120.05566 * 180.02562 * 23 19 18 40 40 H 1.08995 * 113.61839 * 139.98156 * 24 9 8 41 41 H 1.09001 * 113.61591 * 270.88461 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7985 7 1 4.2205 -1.1761 0.9070 8 6 4.3255 0.4540 2.3995 9 6 5.2296 -0.4730 3.2289 10 1 6.1619 -0.7369 2.7297 11 7 5.4312 -0.0173 4.6066 12 6 6.6206 0.4951 4.9797 13 8 7.5259 0.5796 4.1730 14 6 6.8242 0.9545 6.3702 15 6 5.7870 0.8584 7.2988 16 6 5.9841 1.2887 8.5958 17 35 4.5808 1.1590 9.8567 18 6 7.2070 1.8149 8.9750 19 6 8.2389 1.9126 8.0584 20 6 9.5671 2.4863 8.4802 21 8 9.8049 3.7059 7.7743 22 14 9.5443 2.8235 10.3123 23 6 8.0547 1.4862 6.7596 24 6 4.1317 -1.5404 3.0876 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0228 0.0987 28 1 1.7609 -1.7369 1.6665 29 1 1.7609 -0.1171 2.4043 30 1 3.6285 1.0371 3.0015 31 1 4.8691 1.0594 1.6742 32 1 4.7086 -0.0845 5.2503 33 1 4.8324 0.4484 7.0037 34 1 7.3578 2.1462 9.9918 35 1 10.3596 1.7738 8.2517 36 1 9.1371 4.3875 7.9307 37 1 9.2661 1.5688 11.0562 38 1 10.8488 3.3890 10.7409 39 1 8.8614 1.5628 6.0455 40 1 4.5186 -2.5451 2.9178 41 1 3.3817 -1.5026 3.8777 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_12335870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:16 Heat of formation + Delta-G solvation = -73.155774 kcal Electronic energy + Delta-G solvation = -26819.579119 eV Core-core repulsion = 22647.958135 eV Total energy + Delta-G solvation = -4171.620984 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.017 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.75154 -40.69330 -39.35132 -37.99882 -37.73247 -37.03343 -35.13991 -33.69148 -33.11623 -31.24198 -30.55224 -30.38911 -27.11856 -26.95083 -25.96685 -23.59572 -22.89019 -21.62068 -20.91334 -19.94055 -19.15749 -18.19010 -17.82208 -17.73931 -17.47299 -17.17781 -17.01553 -16.48724 -16.43106 -16.30817 -16.00368 -15.65796 -15.17453 -15.00245 -14.88844 -14.40049 -14.34787 -14.30099 -14.17241 -13.84962 -13.68388 -13.45621 -13.30561 -13.08936 -13.05278 -12.99990 -12.78011 -12.26833 -12.24482 -12.09720 -12.02034 -11.99424 -11.65519 -11.53985 -11.32545 -11.08041 -10.62249 -10.37850 -10.15997 -9.98968 -5.16993 -1.11999 -0.56778 -0.24057 0.33089 1.11635 1.48851 1.54225 1.65161 1.84494 1.93094 2.43629 2.54791 2.86360 3.14038 3.17592 3.19581 3.26633 3.39066 3.42495 3.55009 3.69687 3.70149 3.72902 3.77254 3.87251 3.89963 4.01498 4.14107 4.18525 4.23379 4.41405 4.46537 4.52727 4.54730 4.56248 4.66223 4.74812 4.86550 4.91388 4.98059 5.04940 5.29594 5.38347 6.28676 6.43836 7.02947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.418 3.582 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.601 4.601 6 C -0.102 4.102 7 H 0.112 0.888 8 C -0.152 4.152 9 C 0.122 3.878 10 H 0.123 0.877 11 N -0.715 5.715 12 C 0.562 3.438 13 O -0.524 6.524 14 C -0.128 4.128 15 C -0.054 4.054 16 C -0.095 4.095 17 Br -0.033 7.033 18 C -0.062 4.062 19 C -0.119 4.119 20 C -0.067 4.067 21 O -0.534 6.534 22 Si 0.682 3.318 23 C -0.017 4.017 24 C -0.131 4.131 25 H 0.128 0.872 26 H 0.131 0.869 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.401 0.599 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.121 0.879 36 H 0.381 0.619 37 H -0.253 1.253 38 H -0.248 1.248 39 H 0.149 0.851 40 H 0.084 0.916 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.835 -0.872 4.961 8.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.130 0.870 8 C -0.191 4.191 9 C 0.017 3.983 10 H 0.141 0.859 11 N -0.367 5.367 12 C 0.349 3.651 13 O -0.400 6.400 14 C -0.132 4.132 15 C -0.074 4.074 16 C -0.174 4.174 17 Br 0.053 6.947 18 C -0.082 4.082 19 C -0.120 4.120 20 C -0.178 4.178 21 O -0.340 6.340 22 Si 0.583 3.417 23 C -0.036 4.036 24 C -0.170 4.170 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.237 0.763 33 H 0.156 0.844 34 H 0.159 0.841 35 H 0.138 0.862 36 H 0.228 0.772 37 H -0.178 1.178 38 H -0.172 1.172 39 H 0.166 0.834 40 H 0.103 0.897 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.262 -1.076 4.757 7.175 hybrid contribution -0.843 -0.785 0.228 1.174 sum -6.105 -1.861 4.986 8.098 Atomic orbital electron populations 1.30302 1.26852 1.11605 1.12033 1.07952 0.78320 0.75999 0.77731 1.93624 1.78829 1.34201 1.86362 1.93624 1.79016 1.67084 1.53761 1.30302 1.04742 1.14212 1.23659 1.22069 0.90848 0.99334 0.99967 0.87031 1.23702 0.99208 0.96369 0.99828 1.22561 0.98994 0.94940 0.81804 0.85918 1.45871 1.14293 1.63820 1.12688 1.18144 0.82555 0.77329 0.87061 1.90831 1.41778 1.54491 1.52911 1.19969 0.95255 1.04232 0.93727 1.21266 0.98714 0.96298 0.91168 1.21642 0.94720 1.06483 0.94570 1.96846 1.44831 1.97452 1.55559 1.21203 0.91154 0.96266 0.99574 1.20388 0.96498 1.01180 0.93963 1.25090 0.94926 0.88716 1.09071 1.86556 1.52704 1.23087 1.71614 0.94885 0.86344 0.86379 0.74101 1.21315 0.96242 0.90653 0.95388 1.23382 0.97788 0.99017 0.96828 0.85318 0.85082 0.85319 0.84475 0.84767 0.88759 0.89456 0.76345 0.84428 0.84071 0.86206 0.77184 1.17753 1.17241 0.83377 0.89713 0.88909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.16 10.62 101.05 1.07 4.23 16 2 S 2.42 -4.81 5.35 -107.50 -0.58 -5.38 16 3 O -0.93 -1.96 18.10 -57.83 -1.05 -3.00 16 4 O -0.94 -2.20 18.10 -57.83 -1.05 -3.25 16 5 C -0.60 2.93 5.65 37.16 0.21 3.14 16 6 C -0.10 0.28 3.65 -89.81 -0.33 -0.05 16 7 H 0.11 -0.25 8.13 -51.92 -0.42 -0.68 16 8 C -0.15 0.22 7.43 -25.93 -0.19 0.03 16 9 C 0.12 -0.16 4.24 -67.12 -0.28 -0.45 16 10 H 0.12 0.04 7.46 -51.93 -0.39 -0.35 16 11 N -0.72 1.08 5.31 -53.96 -0.29 0.80 16 12 C 0.56 0.86 7.77 -12.33 -0.10 0.76 16 13 O -0.52 -2.85 15.95 5.32 0.08 -2.77 16 14 C -0.13 -0.02 5.87 -104.97 -0.62 -0.63 16 15 C -0.05 0.09 9.28 -39.16 -0.36 -0.27 16 16 C -0.09 0.12 6.22 -39.58 -0.25 -0.13 16 17 Br -0.03 0.04 33.69 -68.01 -2.29 -2.25 16 18 C -0.06 0.09 8.41 -39.46 -0.33 -0.24 16 19 C -0.12 0.10 5.35 -104.68 -0.56 -0.46 16 20 C -0.07 0.07 2.80 36.01 0.10 0.17 16 21 O -0.53 0.22 12.83 -35.23 -0.45 -0.24 16 22 Si 0.68 -1.28 29.79 -169.99 -5.06 -6.35 16 23 C -0.02 -0.01 9.22 -39.19 -0.36 -0.37 16 24 C -0.13 0.48 7.39 -25.92 -0.19 0.28 16 25 H 0.13 -0.84 8.14 -51.92 -0.42 -1.26 16 26 H 0.13 -0.58 8.14 -51.92 -0.42 -1.00 16 27 H 0.13 -0.83 8.14 -51.93 -0.42 -1.26 16 28 H 0.14 -0.97 8.14 -51.92 -0.42 -1.39 16 29 H 0.13 -0.96 7.85 -51.92 -0.41 -1.36 16 30 H 0.09 -0.24 7.90 -51.93 -0.41 -0.65 16 31 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 32 H 0.40 -1.73 6.76 -40.82 -0.28 -2.01 16 33 H 0.14 -0.58 6.41 -52.48 -0.34 -0.91 16 34 H 0.14 -0.43 4.89 -52.49 -0.26 -0.69 16 35 H 0.12 -0.09 7.96 -51.93 -0.41 -0.50 16 36 H 0.38 -1.66 8.70 45.56 0.40 -1.26 16 37 H -0.25 -0.08 7.11 56.52 0.40 0.32 16 38 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 39 H 0.15 0.24 7.65 -52.48 -0.40 -0.16 16 40 H 0.08 -0.31 8.14 -51.93 -0.42 -0.74 16 41 H 0.09 -0.49 8.08 -51.93 -0.42 -0.91 16 LS Contribution 377.86 15.07 5.69 5.69 Total: 0.00 -13.66 377.86 -12.24 -25.90 By element: Atomic # 1 Polarization: -10.10 SS G_CDS: -5.07 Total: -15.17 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -2.19 Total: 6.01 kcal Atomic # 7 Polarization: 1.08 SS G_CDS: -0.29 Total: 0.80 kcal Atomic # 8 Polarization: -6.79 SS G_CDS: -2.46 Total: -9.25 kcal Atomic # 14 Polarization: -1.28 SS G_CDS: -5.06 Total: -6.35 kcal Atomic # 16 Polarization: -4.81 SS G_CDS: -0.58 Total: -5.38 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -2.29 Total: -2.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -13.66 -12.24 -25.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12335870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.259 kcal (2) G-P(sol) polarization free energy of solvation -13.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds