Wall clock time and date at job start Tue Mar 9 2021 12:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 O 1.42094 * 108.57735 * 2 1 4 4 O 1.42100 * 108.57816 * 228.97349 * 2 1 3 5 5 C 1.81397 * 101.91800 * 114.48669 * 2 1 3 6 6 C 1.53002 * 109.47113 * 180.02562 * 5 2 1 7 7 H 1.09007 * 112.84728 * 316.19463 * 6 5 2 8 8 C 1.53775 * 113.69309 * 87.46179 * 6 5 2 9 9 C 1.53774 * 87.08265 * 139.99537 * 8 6 5 10 10 H 1.08999 * 113.69232 * 89.12797 * 9 8 6 11 11 N 1.46504 * 113.61610 * 220.02034 * 9 8 6 12 12 C 1.34778 * 120.00196 * 252.49646 * 11 9 8 13 13 O 1.21547 * 119.99926 * 0.02562 * 12 11 9 14 14 C 1.47848 * 119.99909 * 180.02562 * 12 11 9 15 15 C 1.39545 * 120.14179 * 0.02562 * 14 12 11 16 16 C 1.38062 * 119.84326 * 179.97438 * 15 14 12 17 17 Br 1.89099 * 119.94088 * 180.02562 * 16 15 14 18 18 C 1.38429 * 120.12600 * 0.02562 * 16 15 14 19 19 C 1.38365 * 120.27880 * 359.97438 * 18 16 15 20 20 C 1.50703 * 119.91902 * 180.02562 * 19 18 16 21 21 O 1.42905 * 109.46795 * 245.00079 * 20 19 18 22 22 Si 1.86301 * 109.47131 * 4.99770 * 20 19 18 23 23 C 1.37943 * 120.15497 * 0.02562 * 19 18 16 24 24 C 1.53777 * 87.08173 * 334.56871 * 9 8 6 25 25 H 1.09003 * 109.47297 * 305.51613 * 1 2 3 26 26 H 1.09004 * 109.47110 * 65.50850 * 1 2 3 27 27 H 1.08994 * 109.47459 * 185.51201 * 1 2 3 28 28 H 1.09000 * 109.47395 * 60.00124 * 5 2 1 29 29 H 1.09000 * 109.47528 * 299.99943 * 5 2 1 30 30 H 1.09004 * 113.61422 * 25.44850 * 8 6 5 31 31 H 1.09000 * 113.62052 * 254.54230 * 8 6 5 32 32 H 0.97003 * 119.99852 * 72.50130 * 11 9 8 33 33 H 1.08003 * 120.07903 * 359.96475 * 15 14 12 34 34 H 1.07997 * 119.86000 * 180.27123 * 18 16 15 35 35 H 1.08994 * 109.47272 * 125.00216 * 20 19 18 36 36 H 0.96694 * 114.00332 * 60.00007 * 21 20 19 37 37 H 1.48499 * 109.99911 * 58.68006 * 22 20 19 38 38 H 1.48502 * 109.99963 * 179.97438 * 22 20 19 39 39 H 1.08009 * 120.05566 * 180.02562 * 23 19 18 40 40 H 1.08995 * 113.61839 * 139.98156 * 24 9 8 41 41 H 1.09001 * 113.61591 * 270.88461 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 -1.0161 5 6 2.1886 -0.7357 1.6152 6 6 3.7054 -0.8184 1.7985 7 1 4.2205 -1.1761 0.9070 8 6 4.3255 0.4540 2.3995 9 6 5.2296 -0.4730 3.2289 10 1 6.1619 -0.7369 2.7297 11 7 5.4312 -0.0173 4.6066 12 6 6.6206 0.4951 4.9797 13 8 7.5259 0.5796 4.1730 14 6 6.8242 0.9545 6.3702 15 6 5.7870 0.8584 7.2988 16 6 5.9841 1.2887 8.5958 17 35 4.5808 1.1590 9.8567 18 6 7.2070 1.8149 8.9750 19 6 8.2389 1.9126 8.0584 20 6 9.5671 2.4863 8.4802 21 8 9.8049 3.7059 7.7743 22 14 9.5443 2.8235 10.3123 23 6 8.0547 1.4862 6.7596 24 6 4.1317 -1.5404 3.0876 25 1 -0.3634 0.5970 0.8365 26 1 -0.3633 0.4260 -0.9352 27 1 -0.3634 -1.0228 0.0987 28 1 1.7609 -1.7369 1.6665 29 1 1.7609 -0.1171 2.4043 30 1 3.6285 1.0371 3.0015 31 1 4.8691 1.0594 1.6742 32 1 4.7086 -0.0845 5.2503 33 1 4.8324 0.4484 7.0037 34 1 7.3578 2.1462 9.9918 35 1 10.3596 1.7738 8.2517 36 1 9.1371 4.3875 7.9307 37 1 9.2661 1.5688 11.0562 38 1 10.8488 3.3890 10.7409 39 1 8.8614 1.5628 6.0455 40 1 4.5186 -2.5451 2.9178 41 1 3.3817 -1.5026 3.8777 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12335870.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:15 Heat of formation + Delta-G solvation = -80.265674 kcal Electronic energy + Delta-G solvation = -26819.887427 eV Core-core repulsion = 22647.958135 eV Total energy + Delta-G solvation = -4171.929292 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.017 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.74318 -40.58345 -39.36220 -37.96312 -37.68593 -36.99129 -35.16054 -33.62167 -33.03563 -30.97295 -30.45826 -30.07487 -27.04967 -26.75779 -25.91939 -23.47398 -22.83089 -21.62893 -20.75274 -19.79355 -19.10549 -18.10489 -17.77043 -17.62308 -17.35861 -17.02108 -16.91417 -16.41933 -16.38809 -16.22880 -15.99372 -15.64144 -15.11969 -14.96890 -14.67947 -14.32748 -14.10532 -14.03655 -13.89657 -13.63766 -13.45945 -13.32298 -13.20229 -13.05731 -13.03285 -12.99415 -12.65388 -12.23200 -12.05117 -11.98297 -11.94662 -11.93531 -11.52918 -11.43594 -11.21147 -11.03291 -10.56924 -10.36171 -10.09595 -9.91401 -5.06164 -0.89486 -0.52885 -0.16898 0.42969 1.20606 1.49276 1.59164 1.90112 1.92886 1.98389 2.44702 2.77930 3.12450 3.26263 3.32760 3.37104 3.44590 3.54275 3.64224 3.73322 3.80468 3.86785 3.95478 4.05544 4.10732 4.17638 4.19803 4.27336 4.34644 4.47281 4.54426 4.71354 4.72513 4.75710 4.81385 4.91706 4.94477 4.99553 5.03406 5.07199 5.15139 5.35557 5.48621 6.36174 6.70701 7.02998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.404 3.596 3 O -0.989 6.989 4 O -0.996 6.996 5 C -0.579 4.579 6 C -0.111 4.111 7 H 0.096 0.904 8 C -0.158 4.158 9 C 0.110 3.890 10 H 0.095 0.905 11 N -0.697 5.697 12 C 0.558 3.442 13 O -0.576 6.576 14 C -0.136 4.136 15 C -0.042 4.042 16 C -0.099 4.099 17 Br -0.025 7.025 18 C -0.059 4.059 19 C -0.117 4.117 20 C -0.077 4.077 21 O -0.553 6.553 22 Si 0.773 3.227 23 C -0.032 4.032 24 C -0.111 4.111 25 H 0.155 0.845 26 H 0.126 0.874 27 H 0.154 0.846 28 H 0.172 0.828 29 H 0.170 0.830 30 H 0.112 0.888 31 H 0.057 0.943 32 H 0.418 0.582 33 H 0.166 0.834 34 H 0.159 0.841 35 H 0.111 0.889 36 H 0.397 0.603 37 H -0.276 1.276 38 H -0.294 1.294 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.072 -1.696 7.350 12.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.593 3.407 3 O -0.986 6.986 4 O -0.993 6.993 5 C -0.710 4.710 6 C -0.131 4.131 7 H 0.114 0.886 8 C -0.197 4.197 9 C 0.005 3.995 10 H 0.113 0.887 11 N -0.348 5.348 12 C 0.346 3.654 13 O -0.456 6.456 14 C -0.140 4.140 15 C -0.062 4.062 16 C -0.178 4.178 17 Br 0.061 6.939 18 C -0.078 4.078 19 C -0.118 4.118 20 C -0.186 4.186 21 O -0.361 6.361 22 Si 0.678 3.322 23 C -0.052 4.052 24 C -0.150 4.150 25 H 0.173 0.827 26 H 0.144 0.856 27 H 0.172 0.828 28 H 0.190 0.810 29 H 0.187 0.813 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.257 0.743 33 H 0.183 0.817 34 H 0.176 0.824 35 H 0.128 0.872 36 H 0.247 0.753 37 H -0.202 1.202 38 H -0.222 1.222 39 H 0.145 0.855 40 H 0.107 0.893 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.539 -1.888 7.103 11.266 hybrid contribution 0.150 -0.531 -0.473 0.727 sum -8.389 -2.419 6.630 10.963 Atomic orbital electron populations 1.30133 1.22470 1.13842 1.13049 1.07872 0.79784 0.74475 0.78522 1.93556 1.80769 1.36755 1.87500 1.93551 1.81002 1.67725 1.57037 1.30133 1.03203 1.16447 1.21226 1.22086 0.92440 0.98535 1.00055 0.88601 1.23765 0.99495 0.96820 0.99572 1.22583 0.98754 0.96511 0.81649 0.88686 1.45753 1.13788 1.62314 1.12982 1.18445 0.82745 0.76957 0.87281 1.90805 1.43601 1.56876 1.54359 1.19869 0.95739 1.05044 0.93379 1.21471 0.99060 0.95193 0.90512 1.21749 0.94914 1.06337 0.94832 1.96865 1.44365 1.97423 1.55275 1.21380 0.90827 0.95579 1.00054 1.20331 0.96823 1.01206 0.93477 1.25283 0.94656 0.88537 1.10144 1.86517 1.53818 1.23759 1.72055 0.93875 0.83552 0.83503 0.71289 1.21262 0.96258 0.91865 0.95803 1.23359 0.96941 0.98034 0.96686 0.82699 0.85552 0.82809 0.81045 0.81262 0.86943 0.92427 0.74331 0.81654 0.82418 0.87179 0.75282 1.20230 1.22211 0.85511 0.89312 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.42 10.62 113.37 1.20 8.62 16 2 S 2.40 -8.34 5.35 -56.49 -0.30 -8.64 16 3 O -0.99 -6.10 18.10 -127.37 -2.30 -8.41 16 4 O -1.00 -6.71 18.10 -127.37 -2.30 -9.02 16 5 C -0.58 6.96 5.65 71.98 0.41 7.37 16 6 C -0.11 0.63 3.65 -10.27 -0.04 0.59 16 7 H 0.10 -0.25 8.13 -2.38 -0.02 -0.26 16 8 C -0.16 0.32 7.43 31.12 0.23 0.55 16 9 C 0.11 -0.21 4.24 45.51 0.19 -0.02 16 10 H 0.10 0.36 7.46 -2.39 -0.02 0.34 16 11 N -0.70 2.19 5.31 -442.92 -2.35 -0.16 16 12 C 0.56 2.52 7.77 86.79 0.67 3.20 16 13 O -0.58 -8.20 15.95 -3.86 -0.06 -8.27 16 14 C -0.14 -0.12 5.87 -20.09 -0.12 -0.24 16 15 C -0.04 0.20 9.28 22.54 0.21 0.40 16 16 C -0.10 0.39 6.22 22.27 0.14 0.53 16 17 Br -0.03 0.12 33.69 -20.37 -0.69 -0.57 16 18 C -0.06 0.23 8.41 22.35 0.19 0.41 16 19 C -0.12 0.12 5.35 -19.90 -0.11 0.02 16 20 C -0.08 0.09 2.80 71.24 0.20 0.29 16 21 O -0.55 -0.14 12.83 -148.98 -1.91 -2.05 16 22 Si 0.77 -2.88 29.79 68.60 2.04 -0.84 16 23 C -0.03 -0.09 9.22 22.53 0.21 0.11 16 24 C -0.11 1.00 7.39 31.12 0.23 1.23 16 25 H 0.15 -2.55 8.14 -2.39 -0.02 -2.57 16 26 H 0.13 -1.22 8.14 -2.39 -0.02 -1.24 16 27 H 0.15 -2.49 8.14 -2.39 -0.02 -2.51 16 28 H 0.17 -3.14 8.14 -2.39 -0.02 -3.16 16 29 H 0.17 -3.15 7.85 -2.39 -0.02 -3.16 16 30 H 0.11 -0.69 7.90 -2.38 -0.02 -0.71 16 31 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.42 -4.47 6.76 -92.71 -0.63 -5.09 16 33 H 0.17 -1.83 6.41 -2.91 -0.02 -1.85 16 34 H 0.16 -1.20 4.89 -2.91 -0.01 -1.21 16 35 H 0.11 0.03 7.96 -2.39 -0.02 0.02 16 36 H 0.40 -3.30 8.70 -74.06 -0.64 -3.94 16 37 H -0.28 -0.04 7.11 99.48 0.71 0.66 16 38 H -0.29 -1.20 7.11 99.48 0.71 -0.49 16 39 H 0.13 0.87 7.65 -2.91 -0.02 0.85 16 40 H 0.09 -0.79 8.14 -2.39 -0.02 -0.81 16 41 H 0.12 -1.87 8.08 -2.39 -0.02 -1.89 16 Total: 0.00 -37.32 377.86 -4.40 -41.72 By element: Atomic # 1 Polarization: -26.69 SS G_CDS: -0.14 Total: -26.83 kcal Atomic # 6 Polarization: 19.45 SS G_CDS: 3.62 Total: 23.07 kcal Atomic # 7 Polarization: 2.19 SS G_CDS: -2.35 Total: -0.16 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -6.58 Total: -27.75 kcal Atomic # 14 Polarization: -2.88 SS G_CDS: 2.04 Total: -0.84 kcal Atomic # 16 Polarization: -8.34 SS G_CDS: -0.30 Total: -8.64 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -37.32 -4.40 -41.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12335870.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.545 kcal (2) G-P(sol) polarization free energy of solvation -37.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds