Wall clock time and date at job start Tue Mar 9 2021 12:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 108.57882 * 2 1 4 4 O 1.42099 * 108.58102 * 228.96892 * 2 1 3 5 5 C 1.81409 * 101.92057 * 114.48505 * 2 1 3 6 6 C 1.53001 * 109.46993 * 179.97438 * 5 2 1 7 7 H 1.09001 * 112.85055 * 316.19576 * 6 5 2 8 8 C 1.53961 * 113.66398 * 87.44032 * 6 5 2 9 9 C 1.53780 * 87.01713 * 139.93314 * 8 6 5 10 10 H 1.09007 * 113.61378 * 89.22972 * 9 8 6 11 11 N 1.46499 * 113.61627 * 220.04578 * 9 8 6 12 12 C 1.34770 * 120.00384 * 254.13877 * 11 9 8 13 13 O 1.21568 * 120.00029 * 359.97438 * 12 11 9 14 14 C 1.47730 * 120.00334 * 179.97438 * 12 11 9 15 15 C 1.39633 * 120.11894 * 180.29915 * 14 12 11 16 16 C 1.37850 * 119.87652 * 180.25562 * 15 14 12 17 17 C 1.50707 * 119.94204 * 179.74629 * 16 15 14 18 18 O 1.42903 * 109.46442 * 14.72219 * 17 16 15 19 19 Si 1.86293 * 109.47256 * 134.71785 * 17 16 15 20 20 C 1.38629 * 120.12326 * 359.46727 * 16 15 14 21 21 F 1.35100 * 119.88877 * 180.25476 * 20 16 15 22 22 C 1.38687 * 120.23575 * 0.23736 * 20 16 15 23 23 C 1.37816 * 120.11667 * 0.04037 * 22 20 16 24 24 C 1.53776 * 113.61615 * 184.99989 * 6 5 2 25 25 H 1.09009 * 109.47207 * 305.51220 * 1 2 3 26 26 H 1.08992 * 109.47102 * 65.51431 * 1 2 3 27 27 H 1.09008 * 109.46890 * 185.51753 * 1 2 3 28 28 H 1.08998 * 109.46876 * 60.00200 * 5 2 1 29 29 H 1.08997 * 109.47105 * 299.99522 * 5 2 1 30 30 H 1.08993 * 113.61289 * 25.41261 * 8 6 5 31 31 H 1.09002 * 113.66557 * 254.45662 * 8 6 5 32 32 H 0.97006 * 119.99622 * 74.13017 * 11 9 8 33 33 H 1.08006 * 120.05934 * 359.97438 * 15 14 12 34 34 H 1.08999 * 109.47345 * 254.72289 * 17 16 15 35 35 H 0.96700 * 114.00311 * 60.00230 * 18 17 16 36 36 H 1.48501 * 109.99918 * 58.68485 * 19 17 16 37 37 H 1.48506 * 109.99973 * 180.02562 * 19 17 16 38 38 H 1.07993 * 119.93819 * 180.02562 * 22 20 16 39 39 H 1.08004 * 120.05645 * 180.02562 * 23 22 20 40 40 H 1.08997 * 113.61940 * 105.47010 * 24 6 5 41 41 H 1.09003 * 113.69131 * 334.58026 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7980 7 1 4.2200 -1.1778 0.9064 8 6 4.3269 0.4545 2.3987 9 6 5.2290 -0.4737 3.2290 10 1 6.1617 -0.7370 2.7300 11 7 5.4300 -0.0182 4.6068 12 6 6.6088 0.5231 4.9725 13 8 7.5056 0.6330 4.1591 14 6 6.8113 0.9829 6.3617 15 6 8.0295 1.5498 6.7416 16 6 8.2148 1.9724 8.0406 17 6 9.5311 2.5792 8.4537 18 8 10.2836 2.9228 7.2885 19 14 9.2180 4.1121 9.4651 20 6 7.1908 1.8455 8.9663 21 9 7.3758 2.2659 10.2369 22 6 5.9767 1.2888 8.5928 23 6 5.7827 0.8579 7.2982 24 6 4.1317 -1.5416 3.0871 25 1 -0.3634 0.5970 0.8366 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3633 -1.0230 0.0988 28 1 1.7610 -1.7369 1.6665 29 1 1.7611 -0.1170 2.4043 30 1 3.6302 1.0385 2.9999 31 1 4.8720 1.0592 1.6738 32 1 4.7145 -0.1061 5.2559 33 1 8.8266 1.6529 6.0202 34 1 10.0922 1.8592 9.0493 35 1 9.8439 3.5613 6.7104 36 1 8.4090 3.7734 10.6634 37 1 10.5083 4.7203 9.8781 38 1 5.1821 1.1927 9.3177 39 1 4.8367 0.4249 7.0082 40 1 4.5192 -2.5461 2.9172 41 1 3.3822 -1.5052 3.8777 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:38 Heat of formation + Delta-G solvation = -111.518345 kcal Electronic energy + Delta-G solvation = -27271.794475 eV Core-core repulsion = 22968.873993 eV Total energy + Delta-G solvation = -4302.920483 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -50.41299 -41.63539 -40.48345 -39.20337 -38.00064 -37.71331 -37.03465 -35.07645 -32.85885 -32.12272 -31.16212 -30.36768 -27.21971 -26.95276 -25.64137 -23.57420 -23.31578 -21.59828 -20.95538 -19.94424 -19.33091 -18.83051 -18.19939 -17.82614 -17.75214 -17.42147 -17.15652 -17.12881 -16.73816 -16.31471 -16.01884 -16.00729 -15.79386 -15.35170 -15.22143 -14.89092 -14.71937 -14.41321 -14.30213 -14.09459 -13.85835 -13.69078 -13.64251 -13.54133 -13.28349 -13.08991 -13.00182 -12.84150 -12.73347 -12.37599 -12.25782 -12.09908 -11.64540 -11.36637 -11.32181 -11.04246 -10.91478 -10.23499 -10.10491 -9.75845 -5.03830 -1.12268 -0.55999 -0.07481 1.20166 1.59808 1.64504 1.65011 1.93802 2.00989 2.53400 2.54778 2.86105 2.92153 3.14244 3.16981 3.20799 3.28187 3.39704 3.49485 3.53597 3.62122 3.69716 3.72629 3.81117 3.87192 4.01333 4.02835 4.22562 4.31697 4.43687 4.46841 4.53432 4.54968 4.57396 4.68716 4.75110 4.76902 4.91845 4.95265 4.98384 5.05900 5.36916 5.52118 6.32999 6.42534 7.08124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.419 3.581 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.152 4.152 9 C 0.122 3.878 10 H 0.122 0.878 11 N -0.716 5.716 12 C 0.562 3.438 13 O -0.526 6.526 14 C -0.142 4.142 15 C -0.019 4.019 16 C -0.154 4.154 17 C -0.066 4.066 18 O -0.535 6.535 19 Si 0.682 3.318 20 C 0.118 3.882 21 F -0.121 7.121 22 C -0.152 4.152 23 C -0.060 4.060 24 C -0.131 4.131 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.128 0.872 28 H 0.137 0.863 29 H 0.134 0.866 30 H 0.094 0.906 31 H 0.087 0.913 32 H 0.400 0.600 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.382 0.618 36 H -0.229 1.229 37 H -0.258 1.258 38 H 0.146 0.854 39 H 0.137 0.863 40 H 0.084 0.916 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.157 -1.144 2.873 8.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.600 3.400 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.122 4.122 7 H 0.130 0.870 8 C -0.191 4.191 9 C 0.018 3.982 10 H 0.140 0.860 11 N -0.368 5.368 12 C 0.349 3.651 13 O -0.403 6.403 14 C -0.145 4.145 15 C -0.038 4.038 16 C -0.156 4.156 17 C -0.176 4.176 18 O -0.341 6.341 19 Si 0.582 3.418 20 C 0.099 3.901 21 F -0.099 7.099 22 C -0.170 4.170 23 C -0.079 4.079 24 C -0.170 4.170 25 H 0.147 0.853 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.155 0.845 29 H 0.152 0.848 30 H 0.112 0.888 31 H 0.105 0.895 32 H 0.236 0.764 33 H 0.174 0.826 34 H 0.140 0.860 35 H 0.230 0.770 36 H -0.152 1.152 37 H -0.183 1.183 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.102 0.898 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.401 -0.772 2.703 6.991 hybrid contribution -1.092 -1.050 1.180 1.921 sum -7.493 -1.823 3.883 8.634 Atomic orbital electron populations 1.30304 1.26895 1.11587 1.12017 1.07943 0.78291 0.75996 0.77725 1.93625 1.78816 1.34195 1.86361 1.93625 1.79004 1.67087 1.53776 1.30299 1.04766 1.14172 1.23652 1.22104 0.90813 0.99361 0.99963 0.87044 1.23731 0.99204 0.96317 0.99821 1.22539 0.98921 0.94864 0.81922 0.86030 1.45859 1.15474 1.63041 1.12409 1.18164 0.82315 0.77332 0.87261 1.90830 1.41921 1.54853 1.52672 1.19981 0.95777 1.04828 0.93961 1.20985 0.96372 0.91723 0.94723 1.20378 0.96669 1.04110 0.94398 1.25016 0.90418 1.07558 0.94591 1.86522 1.46083 1.66069 1.35386 0.95234 0.83881 0.80263 0.82430 1.17776 0.94629 0.98360 0.79381 1.91583 1.95181 1.86620 1.36545 1.21090 0.96718 1.01480 0.97757 1.21152 0.98236 0.96496 0.91991 1.23369 0.97800 0.99010 0.96820 0.85335 0.85094 0.85337 0.84519 0.84790 0.88795 0.89466 0.76382 0.82603 0.85970 0.77029 1.15243 1.18312 0.83617 0.84551 0.89750 0.88954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.32 10.62 101.05 1.07 4.39 16 2 S 2.42 -5.51 5.35 -107.50 -0.58 -6.09 16 3 O -0.93 -1.66 18.10 -57.83 -1.05 -2.70 16 4 O -0.94 -1.99 18.10 -57.83 -1.05 -3.03 16 5 C -0.60 3.11 5.65 37.16 0.21 3.32 16 6 C -0.10 0.31 3.66 -89.71 -0.33 -0.02 16 7 H 0.11 -0.28 8.13 -51.93 -0.42 -0.70 16 8 C -0.15 0.28 7.45 -25.82 -0.19 0.08 16 9 C 0.12 -0.21 4.21 -67.12 -0.28 -0.49 16 10 H 0.12 0.00 7.50 -51.92 -0.39 -0.39 16 11 N -0.72 1.49 5.31 -54.00 -0.29 1.20 16 12 C 0.56 0.56 7.77 -12.38 -0.10 0.47 16 13 O -0.53 -2.61 15.96 5.31 0.08 -2.53 16 14 C -0.14 0.06 5.87 -104.97 -0.62 -0.56 16 15 C -0.02 -0.01 8.77 -39.20 -0.34 -0.35 16 16 C -0.15 0.02 5.13 -104.62 -0.54 -0.52 16 17 C -0.07 0.00 2.97 36.01 0.11 0.11 16 18 O -0.54 -0.15 11.64 -35.23 -0.41 -0.56 16 19 Si 0.68 -0.36 30.81 -169.99 -5.24 -5.60 16 20 C 0.12 -0.02 6.67 -39.27 -0.26 -0.29 16 21 F -0.12 -0.15 12.82 2.25 0.03 -0.12 16 22 C -0.15 0.31 10.01 -39.57 -0.40 -0.08 16 23 C -0.06 0.17 9.54 -39.20 -0.37 -0.21 16 24 C -0.13 0.52 7.39 -25.92 -0.19 0.33 16 25 H 0.13 -0.87 8.14 -51.92 -0.42 -1.30 16 26 H 0.13 -0.60 8.14 -51.93 -0.42 -1.03 16 27 H 0.13 -0.86 8.14 -51.92 -0.42 -1.28 16 28 H 0.14 -1.00 8.14 -51.92 -0.42 -1.43 16 29 H 0.13 -1.00 7.85 -51.93 -0.41 -1.41 16 30 H 0.09 -0.28 7.90 -51.93 -0.41 -0.69 16 31 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 32 H 0.40 -2.05 6.74 -40.82 -0.28 -2.32 16 33 H 0.16 0.14 6.65 -52.48 -0.35 -0.21 16 34 H 0.12 0.05 7.96 -51.93 -0.41 -0.36 16 35 H 0.38 -1.35 8.42 45.56 0.38 -0.97 16 36 H -0.23 -0.37 5.27 56.52 0.30 -0.07 16 37 H -0.26 -0.71 7.11 56.52 0.40 -0.30 16 38 H 0.15 -0.58 8.06 -52.49 -0.42 -1.00 16 39 H 0.14 -0.82 6.40 -52.48 -0.34 -1.16 16 40 H 0.08 -0.34 8.14 -51.93 -0.42 -0.76 16 41 H 0.09 -0.53 8.07 -51.93 -0.42 -0.95 16 LS Contribution 358.70 15.07 5.41 5.41 Total: 0.00 -13.98 358.70 -10.61 -24.59 By element: Atomic # 1 Polarization: -11.46 SS G_CDS: -5.30 Total: -16.76 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -2.23 Total: 6.19 kcal Atomic # 7 Polarization: 1.49 SS G_CDS: -0.29 Total: 1.20 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -2.42 Total: -8.83 kcal Atomic # 9 Polarization: -0.15 SS G_CDS: 0.03 Total: -0.12 kcal Atomic # 14 Polarization: -0.36 SS G_CDS: -5.24 Total: -5.60 kcal Atomic # 16 Polarization: -5.51 SS G_CDS: -0.58 Total: -6.09 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -13.98 -10.61 -24.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.929 kcal (2) G-P(sol) polarization free energy of solvation -13.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds