Wall clock time and date at job start Tue Mar 9 2021 12:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42100 * 108.57882 * 2 1 4 4 O 1.42099 * 108.58102 * 228.96892 * 2 1 3 5 5 C 1.81409 * 101.92057 * 114.48505 * 2 1 3 6 6 C 1.53001 * 109.46993 * 179.97438 * 5 2 1 7 7 H 1.09001 * 112.85055 * 316.19576 * 6 5 2 8 8 C 1.53961 * 113.66398 * 87.44032 * 6 5 2 9 9 C 1.53780 * 87.01713 * 139.93314 * 8 6 5 10 10 H 1.09007 * 113.61378 * 89.22972 * 9 8 6 11 11 N 1.46499 * 113.61627 * 220.04578 * 9 8 6 12 12 C 1.34770 * 120.00384 * 254.13877 * 11 9 8 13 13 O 1.21568 * 120.00029 * 359.97438 * 12 11 9 14 14 C 1.47730 * 120.00334 * 179.97438 * 12 11 9 15 15 C 1.39633 * 120.11894 * 180.29915 * 14 12 11 16 16 C 1.37850 * 119.87652 * 180.25562 * 15 14 12 17 17 C 1.50707 * 119.94204 * 179.74629 * 16 15 14 18 18 O 1.42903 * 109.46442 * 14.72219 * 17 16 15 19 19 Si 1.86293 * 109.47256 * 134.71785 * 17 16 15 20 20 C 1.38629 * 120.12326 * 359.46727 * 16 15 14 21 21 F 1.35100 * 119.88877 * 180.25476 * 20 16 15 22 22 C 1.38687 * 120.23575 * 0.23736 * 20 16 15 23 23 C 1.37816 * 120.11667 * 0.04037 * 22 20 16 24 24 C 1.53776 * 113.61615 * 184.99989 * 6 5 2 25 25 H 1.09009 * 109.47207 * 305.51220 * 1 2 3 26 26 H 1.08992 * 109.47102 * 65.51431 * 1 2 3 27 27 H 1.09008 * 109.46890 * 185.51753 * 1 2 3 28 28 H 1.08998 * 109.46876 * 60.00200 * 5 2 1 29 29 H 1.08997 * 109.47105 * 299.99522 * 5 2 1 30 30 H 1.08993 * 113.61289 * 25.41261 * 8 6 5 31 31 H 1.09002 * 113.66557 * 254.45662 * 8 6 5 32 32 H 0.97006 * 119.99622 * 74.13017 * 11 9 8 33 33 H 1.08006 * 120.05934 * 359.97438 * 15 14 12 34 34 H 1.08999 * 109.47345 * 254.72289 * 17 16 15 35 35 H 0.96700 * 114.00311 * 60.00230 * 18 17 16 36 36 H 1.48501 * 109.99918 * 58.68485 * 19 17 16 37 37 H 1.48506 * 109.99973 * 180.02562 * 19 17 16 38 38 H 1.07993 * 119.93819 * 180.02562 * 22 20 16 39 39 H 1.08004 * 120.05645 * 180.02562 * 23 22 20 40 40 H 1.08997 * 113.61940 * 105.47010 * 24 6 5 41 41 H 1.09003 * 113.69131 * 334.58026 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0161 5 6 2.1887 -0.7356 1.6153 6 6 3.7054 -0.8195 1.7980 7 1 4.2200 -1.1778 0.9064 8 6 4.3269 0.4545 2.3987 9 6 5.2290 -0.4737 3.2290 10 1 6.1617 -0.7370 2.7300 11 7 5.4300 -0.0182 4.6068 12 6 6.6088 0.5231 4.9725 13 8 7.5056 0.6330 4.1591 14 6 6.8113 0.9829 6.3617 15 6 8.0295 1.5498 6.7416 16 6 8.2148 1.9724 8.0406 17 6 9.5311 2.5792 8.4537 18 8 10.2836 2.9228 7.2885 19 14 9.2180 4.1121 9.4651 20 6 7.1908 1.8455 8.9663 21 9 7.3758 2.2659 10.2369 22 6 5.9767 1.2888 8.5928 23 6 5.7827 0.8579 7.2982 24 6 4.1317 -1.5416 3.0871 25 1 -0.3634 0.5970 0.8366 26 1 -0.3633 0.4259 -0.9352 27 1 -0.3633 -1.0230 0.0988 28 1 1.7610 -1.7369 1.6665 29 1 1.7611 -0.1170 2.4043 30 1 3.6302 1.0385 2.9999 31 1 4.8720 1.0592 1.6738 32 1 4.7145 -0.1061 5.2559 33 1 8.8266 1.6529 6.0202 34 1 10.0922 1.8592 9.0493 35 1 9.8439 3.5613 6.7104 36 1 8.4090 3.7734 10.6634 37 1 10.5083 4.7203 9.8781 38 1 5.1821 1.1927 9.3177 39 1 4.8367 0.4249 7.0082 40 1 4.5192 -2.5461 2.9172 41 1 3.3822 -1.5052 3.8777 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12496548.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:37 Heat of formation + Delta-G solvation = -119.293724 kcal Electronic energy + Delta-G solvation = -27272.131641 eV Core-core repulsion = 22968.873993 eV Total energy + Delta-G solvation = -4303.257648 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 344.097 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.41406 -41.58549 -40.34440 -39.19319 -37.93794 -37.69934 -36.96496 -35.04764 -32.76570 -32.02229 -30.86941 -30.03038 -27.17538 -26.71728 -25.55934 -23.42602 -23.22810 -21.57240 -20.75706 -19.76894 -19.25173 -18.79809 -18.10522 -17.76036 -17.65007 -17.28342 -17.12024 -16.96620 -16.64359 -16.19089 -15.99992 -15.96748 -15.78292 -15.27339 -15.11704 -14.75732 -14.58595 -14.05539 -14.00106 -13.87774 -13.75745 -13.57409 -13.43947 -13.40569 -13.15937 -13.02391 -12.96884 -12.78707 -12.59086 -12.35122 -12.00233 -11.91331 -11.46726 -11.43314 -11.16201 -11.00494 -10.89815 -10.20028 -10.01334 -9.69702 -5.04473 -0.86957 -0.50002 0.03711 1.20671 1.59237 1.61806 1.93622 1.95458 2.05095 2.59408 2.80797 3.00349 3.15133 3.25222 3.34268 3.39420 3.47571 3.59663 3.68979 3.71020 3.79095 4.01068 4.08620 4.10385 4.12562 4.20694 4.34651 4.37084 4.54994 4.61765 4.76011 4.77818 4.80495 4.85422 4.91131 4.99219 5.01301 5.03219 5.07654 5.10685 5.21302 5.53001 5.62752 6.47147 6.59725 7.14044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.643 4.643 2 S 2.405 3.595 3 O -0.988 6.988 4 O -0.997 6.997 5 C -0.577 4.577 6 C -0.113 4.113 7 H 0.094 0.906 8 C -0.157 4.157 9 C 0.111 3.889 10 H 0.092 0.908 11 N -0.697 5.697 12 C 0.558 3.442 13 O -0.579 6.579 14 C -0.151 4.151 15 C -0.031 4.031 16 C -0.158 4.158 17 C -0.073 4.073 18 O -0.552 6.552 19 Si 0.763 3.237 20 C 0.104 3.896 21 F -0.131 7.131 22 C -0.145 4.145 23 C -0.043 4.043 24 C -0.111 4.111 25 H 0.155 0.845 26 H 0.125 0.875 27 H 0.153 0.847 28 H 0.171 0.829 29 H 0.170 0.830 30 H 0.113 0.887 31 H 0.056 0.944 32 H 0.419 0.581 33 H 0.140 0.860 34 H 0.114 0.886 35 H 0.396 0.604 36 H -0.254 1.254 37 H -0.305 1.305 38 H 0.173 0.827 39 H 0.178 0.822 40 H 0.087 0.913 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.808 -2.351 4.662 12.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.795 4.795 2 S 2.594 3.406 3 O -0.985 6.985 4 O -0.994 6.994 5 C -0.709 4.709 6 C -0.133 4.133 7 H 0.112 0.888 8 C -0.196 4.196 9 C 0.006 3.994 10 H 0.111 0.889 11 N -0.349 5.349 12 C 0.346 3.654 13 O -0.459 6.459 14 C -0.154 4.154 15 C -0.050 4.050 16 C -0.159 4.159 17 C -0.182 4.182 18 O -0.360 6.360 19 Si 0.667 3.333 20 C 0.085 3.915 21 F -0.110 7.110 22 C -0.163 4.163 23 C -0.061 4.061 24 C -0.150 4.150 25 H 0.173 0.827 26 H 0.144 0.856 27 H 0.171 0.829 28 H 0.189 0.811 29 H 0.188 0.812 30 H 0.132 0.868 31 H 0.075 0.925 32 H 0.258 0.742 33 H 0.158 0.842 34 H 0.131 0.869 35 H 0.247 0.753 36 H -0.179 1.179 37 H -0.233 1.233 38 H 0.190 0.810 39 H 0.195 0.805 40 H 0.105 0.895 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.085 -1.980 4.446 11.198 hybrid contribution 0.018 -0.698 0.658 0.959 sum -10.067 -2.678 5.104 11.600 Atomic orbital electron populations 1.30137 1.22606 1.13788 1.13008 1.07863 0.79707 0.74479 0.78555 1.93557 1.80723 1.36730 1.87510 1.93550 1.80985 1.67756 1.57130 1.30122 1.03247 1.16376 1.21154 1.22125 0.92377 0.98682 1.00066 0.88765 1.23792 0.99500 0.96724 0.99563 1.22536 0.98594 0.96390 0.81874 0.88950 1.45715 1.14977 1.61502 1.12664 1.18460 0.82504 0.76989 0.87440 1.90809 1.43802 1.57190 1.54138 1.19975 0.96343 1.05316 0.93746 1.20896 0.96722 0.92736 0.94647 1.20256 0.96638 1.04657 0.94351 1.25099 0.90588 1.07867 0.94628 1.86477 1.46861 1.66831 1.35824 0.94327 0.80284 0.78259 0.80444 1.18027 0.95508 0.99102 0.78886 1.91555 1.95319 1.86897 1.37190 1.21413 0.96352 1.00064 0.98458 1.21511 0.98787 0.94888 0.90900 1.23346 0.97002 0.97958 0.96666 0.82690 0.85635 0.82876 0.81145 0.81172 0.86845 0.92521 0.74151 0.84200 0.86904 0.75312 1.17909 1.23348 0.80993 0.80514 0.89480 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.82 10.62 113.37 1.20 9.02 16 2 S 2.40 -10.18 5.35 -56.49 -0.30 -10.48 16 3 O -0.99 -5.26 18.10 -127.37 -2.30 -7.56 16 4 O -1.00 -6.16 18.10 -127.37 -2.30 -8.47 16 5 C -0.58 7.50 5.65 71.98 0.41 7.91 16 6 C -0.11 0.75 3.66 -10.21 -0.04 0.71 16 7 H 0.09 -0.31 8.13 -2.39 -0.02 -0.33 16 8 C -0.16 0.52 7.45 31.18 0.23 0.75 16 9 C 0.11 -0.37 4.21 45.52 0.19 -0.18 16 10 H 0.09 0.25 7.50 -2.38 -0.02 0.23 16 11 N -0.70 3.67 5.31 -443.02 -2.35 1.31 16 12 C 0.56 1.43 7.77 86.75 0.67 2.11 16 13 O -0.58 -7.29 15.96 -3.93 -0.06 -7.35 16 14 C -0.15 0.17 5.87 -20.09 -0.12 0.05 16 15 C -0.03 -0.05 8.77 22.51 0.20 0.14 16 16 C -0.16 -0.08 5.13 -19.86 -0.10 -0.18 16 17 C -0.07 -0.10 2.97 71.24 0.21 0.11 16 18 O -0.55 -1.33 11.64 -148.98 -1.73 -3.07 16 19 Si 0.76 0.11 30.81 68.60 2.11 2.22 16 20 C 0.10 -0.10 6.67 22.47 0.15 0.05 16 21 F -0.13 -0.30 12.82 44.97 0.58 0.27 16 22 C -0.14 0.94 10.01 22.28 0.22 1.16 16 23 C -0.04 0.35 9.54 22.51 0.21 0.56 16 24 C -0.11 1.13 7.39 31.12 0.23 1.36 16 25 H 0.15 -2.66 8.14 -2.39 -0.02 -2.68 16 26 H 0.13 -1.27 8.14 -2.39 -0.02 -1.29 16 27 H 0.15 -2.56 8.14 -2.39 -0.02 -2.58 16 28 H 0.17 -3.26 8.14 -2.39 -0.02 -3.28 16 29 H 0.17 -3.36 7.85 -2.39 -0.02 -3.38 16 30 H 0.11 -0.86 7.90 -2.39 -0.02 -0.88 16 31 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.42 -5.70 6.74 -92.70 -0.62 -6.33 16 33 H 0.14 0.65 6.65 -2.91 -0.02 0.63 16 34 H 0.11 0.31 7.96 -2.39 -0.02 0.29 16 35 H 0.40 -2.11 8.42 -74.06 -0.62 -2.73 16 36 H -0.25 -1.04 5.27 99.48 0.52 -0.51 16 37 H -0.31 -2.38 7.11 99.48 0.71 -1.67 16 38 H 0.17 -2.00 8.06 -2.91 -0.02 -2.03 16 39 H 0.18 -2.98 6.40 -2.91 -0.02 -3.00 16 40 H 0.09 -0.86 8.14 -2.39 -0.02 -0.88 16 41 H 0.13 -2.09 8.07 -2.39 -0.02 -2.11 16 Total: 0.00 -38.92 358.70 -3.00 -41.93 By element: Atomic # 1 Polarization: -32.09 SS G_CDS: -0.31 Total: -32.39 kcal Atomic # 6 Polarization: 19.90 SS G_CDS: 3.68 Total: 23.58 kcal Atomic # 7 Polarization: 3.67 SS G_CDS: -2.35 Total: 1.31 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: -6.41 Total: -26.45 kcal Atomic # 9 Polarization: -0.30 SS G_CDS: 0.58 Total: 0.27 kcal Atomic # 14 Polarization: 0.11 SS G_CDS: 2.11 Total: 2.22 kcal Atomic # 16 Polarization: -10.18 SS G_CDS: -0.30 Total: -10.48 kcal Total: -38.92 -3.00 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12496548.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.368 kcal (2) G-P(sol) polarization free energy of solvation -38.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds