Wall clock time and date at job start Tue Mar 9 2021 12:57:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 O 1.42091 * 108.57892 * 2 1 4 4 O 1.42105 * 108.57951 * 228.97194 * 2 1 3 5 5 C 1.81402 * 101.91655 * 114.48672 * 2 1 3 6 6 C 1.53002 * 109.46864 * 179.97438 * 5 2 1 7 7 H 1.09002 * 112.84760 * 43.80391 * 6 5 2 8 8 C 1.53774 * 113.61549 * 174.99674 * 6 5 2 9 9 C 1.53782 * 87.08192 * 140.06763 * 8 6 5 10 10 H 1.08995 * 113.61381 * 89.20492 * 9 8 6 11 11 N 1.46505 * 113.61614 * 220.02247 * 9 8 6 12 12 C 1.34775 * 120.00222 * 205.00115 * 11 9 8 13 13 O 1.21284 * 119.99433 * 359.97438 * 12 11 9 14 14 C 1.50690 * 120.00101 * 179.97438 * 12 11 9 15 15 N 1.46504 * 109.47345 * 179.97438 * 14 12 11 16 16 C 1.35039 * 125.93279 * 124.98366 * 15 14 12 17 17 C 1.35086 * 107.97555 * 180.02562 * 16 15 14 18 18 C 1.50700 * 126.06861 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47578 * 254.97164 * 18 17 16 20 20 Si 1.86300 * 109.47466 * 14.97477 * 18 17 16 21 21 C 1.40843 * 107.85432 * 359.97438 * 17 16 15 22 22 C 1.48412 * 126.03860 * 179.97438 * 21 17 16 23 23 C 1.39323 * 120.12173 * 324.77348 * 22 21 17 24 24 C 1.38025 * 119.87972 * 179.72550 * 23 22 21 25 25 C 1.38319 * 120.11901 * 0.57026 * 24 23 22 26 26 C 1.38323 * 120.24168 * 359.70813 * 25 24 23 27 27 C 1.38023 * 120.11784 * 359.97438 * 26 25 24 28 28 N 1.31622 * 107.92180 * 0.02562 * 21 17 16 29 29 C 1.53778 * 113.69207 * 272.53558 * 6 5 2 30 30 H 1.08997 * 109.46986 * 305.52004 * 1 2 3 31 31 H 1.09002 * 109.46830 * 65.51579 * 1 2 3 32 32 H 1.08995 * 109.47221 * 185.51251 * 1 2 3 33 33 H 1.09000 * 109.47229 * 60.00152 * 5 2 1 34 34 H 1.08995 * 109.46940 * 299.99609 * 5 2 1 35 35 H 1.09006 * 113.61769 * 25.52157 * 8 6 5 36 36 H 1.08999 * 113.61856 * 254.61637 * 8 6 5 37 37 H 0.97002 * 120.00150 * 24.99585 * 11 9 8 38 38 H 1.08996 * 109.47371 * 60.00335 * 14 12 11 39 39 H 1.08999 * 109.47821 * 299.99669 * 14 12 11 40 40 H 1.07993 * 126.01073 * 0.06952 * 16 15 14 41 41 H 1.09012 * 109.47014 * 134.97540 * 18 17 16 42 42 H 0.96698 * 114.00871 * 180.02562 * 19 18 17 43 43 H 1.48498 * 110.00241 * 178.67691 * 20 18 17 44 44 H 1.48499 * 109.99883 * 299.99946 * 20 18 17 45 45 H 1.08002 * 120.05850 * 359.97438 * 23 22 21 46 46 H 1.07998 * 119.93867 * 180.32034 * 24 23 22 47 47 H 1.08001 * 119.88236 * 179.71601 * 25 24 23 48 48 H 1.07996 * 119.94171 * 180.02562 * 26 25 24 49 49 H 1.08002 * 120.05774 * 180.02562 * 27 26 25 50 50 H 1.09004 * 113.61816 * 105.46203 * 29 6 5 51 51 H 1.08993 * 113.61514 * 334.55823 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2668 -0.8842 -1.0162 5 6 2.1886 -0.7357 1.6153 6 6 3.7053 -0.8196 1.7980 7 1 4.2205 0.0877 1.4826 8 6 4.1316 -1.3181 3.1889 9 6 5.2296 -2.1254 2.4765 10 1 6.1619 -1.5756 2.3479 11 7 5.4312 -3.4639 3.0370 12 6 6.6205 -4.0817 2.8954 13 8 7.5238 -3.5298 2.3034 14 6 6.8280 -5.4582 3.4724 15 7 8.1928 -5.9073 3.1859 16 6 9.0973 -6.3251 4.0974 17 6 10.2313 -6.6518 3.4400 18 6 11.5019 -7.1676 4.0649 19 8 12.4814 -6.1273 4.0807 20 14 11.1558 -7.7212 5.8097 21 6 10.0146 -6.4260 2.0668 22 6 10.9983 -6.6524 0.9788 23 6 12.3526 -6.4111 1.1993 24 6 13.2638 -6.6288 0.1857 25 6 12.8331 -7.0744 -1.0509 26 6 11.4890 -7.3101 -1.2771 27 6 10.5701 -7.1019 -0.2686 28 7 8.7860 -5.9776 1.9189 29 6 4.3255 -2.1082 1.2326 30 1 -0.3633 0.5970 0.8364 31 1 -0.3633 0.4259 -0.9353 32 1 -0.3633 -1.0229 0.0987 33 1 1.7609 -1.7369 1.6665 34 1 1.7609 -0.1170 2.4042 35 1 3.3816 -1.9390 3.6790 36 1 4.5186 -0.5305 3.8354 37 1 4.7086 -3.9054 3.5101 38 1 6.1163 -6.1513 3.0239 39 1 6.6744 -5.4271 4.5511 40 1 8.9413 -6.3877 5.1642 41 1 11.8765 -8.0104 3.4838 42 1 13.3271 -6.3890 4.4698 43 1 12.3939 -8.2616 6.4262 44 1 10.6445 -6.5812 6.6122 45 1 12.6893 -6.0582 2.1629 46 1 14.3145 -6.4470 0.3572 47 1 13.5489 -7.2391 -1.8427 48 1 11.1582 -7.6583 -2.2444 49 1 9.5209 -7.2866 -0.4461 50 1 4.8691 -1.9585 0.2998 51 1 3.6285 -2.9450 1.1878 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12622748.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:42 Heat of formation + Delta-G solvation = 1.827225 kcal Electronic energy + Delta-G solvation = -35363.656502 eV Core-core repulsion = 30552.961927 eV Total energy + Delta-G solvation = -4810.694575 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 406.144 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.48844 -41.22382 -39.88526 -39.47444 -37.99653 -37.86304 -37.02216 -35.04133 -34.72484 -32.42014 -31.92770 -31.54096 -31.02569 -30.16190 -28.69021 -26.78137 -25.98060 -24.68351 -23.58957 -23.41471 -21.86232 -21.50359 -21.02568 -20.58088 -19.82150 -18.52980 -18.47168 -18.30910 -17.90204 -17.59400 -17.23502 -17.02268 -16.72498 -16.62834 -16.25790 -16.11895 -15.94417 -15.81888 -15.47343 -15.15804 -14.84616 -14.72107 -14.49110 -14.33765 -14.13917 -14.06118 -13.92015 -13.69121 -13.66605 -13.62503 -13.48269 -13.36160 -13.19394 -13.08241 -13.02731 -12.78556 -12.64277 -12.38626 -12.16432 -12.06752 -11.96598 -11.86285 -11.54443 -11.47149 -11.28547 -11.07633 -10.64906 -10.31075 -10.13967 -9.87551 -9.75500 -9.29484 -4.85050 -0.92491 0.06862 0.47155 0.78285 1.31801 1.40995 1.44600 1.67698 1.68983 1.90027 2.01417 2.08623 2.75322 2.88710 3.09277 3.31957 3.33603 3.41418 3.54746 3.59267 3.64624 3.71600 3.75156 3.91370 4.03193 4.03411 4.08522 4.10475 4.13543 4.15126 4.16090 4.29709 4.31292 4.40214 4.50571 4.52549 4.62142 4.69166 4.71667 4.78463 4.79244 4.86374 4.91787 4.97276 5.00474 5.00973 5.15379 5.16901 5.30830 5.49143 5.57178 5.61015 5.63847 5.90597 6.05622 6.46523 6.59051 6.69295 7.16914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.641 4.641 2 S 2.400 3.600 3 O -0.997 6.997 4 O -0.991 6.991 5 C -0.576 4.576 6 C -0.113 4.113 7 H 0.090 0.910 8 C -0.106 4.106 9 C 0.113 3.887 10 H 0.082 0.918 11 N -0.698 5.698 12 C 0.492 3.508 13 O -0.572 6.572 14 C 0.110 3.890 15 N -0.360 5.360 16 C 0.074 3.926 17 C -0.227 4.227 18 C -0.055 4.055 19 O -0.555 6.555 20 Si 0.783 3.217 21 C 0.107 3.893 22 C -0.038 4.038 23 C -0.115 4.115 24 C -0.129 4.129 25 C -0.117 4.117 26 C -0.130 4.130 27 C -0.109 4.109 28 N -0.295 5.295 29 C -0.158 4.158 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.156 0.844 33 H 0.171 0.829 34 H 0.173 0.827 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.425 0.575 38 H 0.148 0.852 39 H 0.181 0.819 40 H 0.217 0.783 41 H 0.075 0.925 42 H 0.392 0.608 43 H -0.287 1.287 44 H -0.280 1.280 45 H 0.151 0.849 46 H 0.145 0.855 47 H 0.147 0.853 48 H 0.142 0.858 49 H 0.117 0.883 50 H 0.047 0.953 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.501 -6.536 10.326 15.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.590 3.410 3 O -0.995 6.995 4 O -0.988 6.988 5 C -0.708 4.708 6 C -0.133 4.133 7 H 0.108 0.892 8 C -0.145 4.145 9 C 0.008 3.992 10 H 0.100 0.900 11 N -0.351 5.351 12 C 0.277 3.723 13 O -0.449 6.449 14 C -0.013 4.013 15 N -0.142 5.142 16 C -0.071 4.071 17 C -0.238 4.238 18 C -0.163 4.163 19 O -0.366 6.366 20 Si 0.686 3.314 21 C -0.058 4.058 22 C -0.040 4.040 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.135 4.135 26 C -0.148 4.148 27 C -0.129 4.129 28 N -0.116 5.116 29 C -0.197 4.197 30 H 0.173 0.827 31 H 0.144 0.856 32 H 0.174 0.826 33 H 0.189 0.811 34 H 0.191 0.809 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.264 0.736 38 H 0.166 0.834 39 H 0.198 0.802 40 H 0.233 0.767 41 H 0.093 0.907 42 H 0.242 0.758 43 H -0.214 1.214 44 H -0.206 1.206 45 H 0.169 0.831 46 H 0.163 0.837 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.135 0.865 50 H 0.066 0.934 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -9.654 -4.936 8.998 14.090 hybrid contribution 1.155 0.326 0.292 1.235 sum -8.499 -4.611 9.290 13.409 Atomic orbital electron populations 1.30116 1.22167 1.13962 1.13060 1.07970 0.79943 0.74406 0.78723 1.93548 1.81074 1.37192 1.87647 1.93558 1.80851 1.67425 1.56957 1.30111 1.03038 1.16543 1.21059 1.22087 0.92511 0.98507 1.00220 0.89166 1.23332 0.96896 0.99468 0.94807 1.22411 0.98086 0.83738 0.95012 0.89970 1.45682 1.14007 1.17718 1.57733 1.21261 0.82810 0.88466 0.79740 1.90838 1.43938 1.67335 1.42806 1.22042 0.79930 0.92973 1.06364 1.48115 1.12230 1.49909 1.03906 1.22760 0.88922 0.98004 0.97439 1.19618 0.96897 1.15551 0.91739 1.24404 0.87080 0.92017 1.12780 1.86528 1.26619 1.39991 1.83421 0.94075 0.84570 0.82295 0.70491 1.20910 0.92203 0.98734 0.93950 1.18059 0.92081 1.02004 0.91841 1.22010 0.91627 0.98222 1.01561 1.21425 1.00515 0.99631 0.93127 1.21605 0.96132 0.97979 0.97784 1.21361 0.93479 1.00553 0.99439 1.21317 0.99962 0.99043 0.92531 1.77678 1.09205 1.22349 1.02383 1.23756 0.99569 0.98616 0.97739 0.82688 0.85554 0.82597 0.81079 0.80907 0.85177 0.89590 0.73574 0.83430 0.80219 0.76706 0.90688 0.75780 1.21417 1.20624 0.83137 0.83739 0.83571 0.84000 0.86472 0.93400 0.86707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.12 10.62 113.37 1.20 8.32 16 2 S 2.40 -5.93 5.35 -56.49 -0.30 -6.23 16 3 O -1.00 -7.89 18.10 -127.37 -2.30 -10.19 16 4 O -0.99 -7.47 18.10 -127.37 -2.31 -9.78 16 5 C -0.58 6.62 5.65 71.98 0.41 7.02 16 6 C -0.11 0.51 3.65 -10.27 -0.04 0.48 16 7 H 0.09 -0.05 8.13 -2.39 -0.02 -0.07 16 8 C -0.11 0.95 7.39 31.12 0.23 1.18 16 9 C 0.11 -0.15 4.24 45.52 0.19 0.05 16 10 H 0.08 0.53 7.46 -2.39 -0.02 0.51 16 11 N -0.70 3.75 5.35 -440.04 -2.36 1.40 16 12 C 0.49 1.32 7.86 87.65 0.69 2.01 16 13 O -0.57 -9.73 15.30 -3.04 -0.05 -9.77 16 14 C 0.11 -0.61 6.98 85.63 0.60 -0.01 16 15 N -0.36 -1.85 3.40 -351.93 -1.20 -3.04 16 16 C 0.07 0.16 9.96 83.47 0.83 0.99 16 17 C -0.23 -1.65 5.37 -19.95 -0.11 -1.75 16 18 C -0.05 -0.12 2.00 71.24 0.14 0.02 16 19 O -0.56 -2.33 10.07 -148.98 -1.50 -3.83 16 20 Si 0.78 -2.73 30.78 68.60 2.11 -0.62 16 21 C 0.11 1.46 6.74 42.53 0.29 1.74 16 22 C -0.04 -0.50 5.80 -20.04 -0.12 -0.62 16 23 C -0.12 -1.20 8.94 22.48 0.20 -1.00 16 24 C -0.13 -0.84 10.03 22.24 0.22 -0.62 16 25 C -0.12 -0.64 10.04 22.31 0.22 -0.42 16 26 C -0.13 -0.96 10.03 22.24 0.22 -0.74 16 27 C -0.11 -1.27 9.75 22.48 0.22 -1.05 16 28 N -0.29 -4.32 11.63 -48.16 -0.56 -4.88 16 29 C -0.16 0.10 7.43 31.12 0.23 0.33 16 30 H 0.15 -2.48 8.14 -2.39 -0.02 -2.50 16 31 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 32 H 0.16 -2.53 8.14 -2.39 -0.02 -2.55 16 33 H 0.17 -3.15 7.85 -2.39 -0.02 -3.17 16 34 H 0.17 -3.12 8.14 -2.39 -0.02 -3.14 16 35 H 0.13 -2.08 8.08 -2.38 -0.02 -2.10 16 36 H 0.09 -0.73 8.14 -2.39 -0.02 -0.75 16 37 H 0.43 -6.45 8.73 -92.71 -0.81 -7.26 16 38 H 0.15 -1.66 8.14 -2.39 -0.02 -1.68 16 39 H 0.18 -2.95 8.07 -2.39 -0.02 -2.97 16 40 H 0.22 -1.51 6.36 -2.91 -0.02 -1.53 16 41 H 0.08 0.09 7.84 -2.38 -0.02 0.07 16 42 H 0.39 -1.75 8.74 -74.06 -0.65 -2.40 16 43 H -0.29 -0.30 7.11 99.48 0.71 0.41 16 44 H -0.28 -0.18 7.04 99.48 0.70 0.53 16 45 H 0.15 1.45 4.52 -2.91 -0.01 1.44 16 46 H 0.14 0.20 8.06 -2.91 -0.02 0.18 16 47 H 0.15 0.01 8.06 -2.91 -0.02 -0.02 16 48 H 0.14 0.39 8.06 -2.91 -0.02 0.36 16 49 H 0.12 1.36 8.06 -2.91 -0.02 1.33 16 50 H 0.05 0.33 8.14 -2.38 -0.02 0.31 16 51 H 0.11 -0.62 7.90 -2.39 -0.02 -0.63 16 Total: 0.00 -54.55 437.63 -3.26 -57.81 By element: Atomic # 1 Polarization: -26.36 SS G_CDS: -0.44 Total: -26.81 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 5.64 Total: 15.94 kcal Atomic # 7 Polarization: -2.41 SS G_CDS: -4.11 Total: -6.52 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -6.16 Total: -33.58 kcal Atomic # 14 Polarization: -2.73 SS G_CDS: 2.11 Total: -0.62 kcal Atomic # 16 Polarization: -5.93 SS G_CDS: -0.30 Total: -6.23 kcal Total: -54.55 -3.26 -57.81 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12622748.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.639 kcal (2) G-P(sol) polarization free energy of solvation -54.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds