Wall clock time and date at job start Tue Mar 9 2021 12:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 108.57924 * 2 1 4 4 O 1.42098 * 108.57619 * 228.97681 * 2 1 3 5 5 C 1.81399 * 101.92273 * 114.49065 * 2 1 3 6 6 C 1.53004 * 109.47189 * 180.02562 * 5 2 1 7 7 H 1.08997 * 112.84765 * 316.19207 * 6 5 2 8 8 C 1.53953 * 113.74142 * 87.39988 * 6 5 2 9 9 C 1.53779 * 87.01645 * 139.94352 * 8 6 5 10 10 H 1.09007 * 113.61357 * 89.23070 * 9 8 6 11 11 N 1.46498 * 113.61398 * 220.04130 * 9 8 6 12 12 C 1.34779 * 120.00686 * 254.13699 * 11 9 8 13 13 O 1.21626 * 119.99284 * 0.02562 * 12 11 9 14 14 C 1.47290 * 120.00122 * 180.02562 * 12 11 9 15 15 C 1.40372 * 120.04196 * 180.02562 * 14 12 11 16 16 O 1.35679 * 120.13897 * 0.03573 * 15 14 12 17 17 C 1.38317 * 119.72402 * 180.02562 * 15 14 12 18 18 C 1.39574 * 119.81356 * 359.97438 * 17 15 14 19 19 C 1.47564 * 119.95358 * 180.02562 * 18 17 15 20 20 C 1.36105 * 125.93937 * 180.02562 * 19 18 17 21 21 C 1.40800 * 106.73149 * 180.02562 * 20 19 18 22 22 C 1.34828 * 107.04950 * 0.02562 * 21 20 19 23 23 C 1.50704 * 125.65392 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.47055 * 64.94671 * 23 22 21 25 25 Si 1.86298 * 109.47325 * 184.94819 * 23 22 21 26 26 O 1.34228 * 108.69468 * 359.97438 * 22 21 20 27 27 C 1.39967 * 120.08547 * 0.28144 * 18 17 15 28 28 C 1.36387 * 120.27960 * 359.43640 * 27 18 17 29 29 C 1.53773 * 113.61313 * 184.99725 * 6 5 2 30 30 H 1.09006 * 109.46713 * 305.50986 * 1 2 3 31 31 H 1.08998 * 109.47060 * 65.50704 * 1 2 3 32 32 H 1.09004 * 109.47033 * 185.51281 * 1 2 3 33 33 H 1.09004 * 109.47391 * 59.99462 * 5 2 1 34 34 H 1.09004 * 109.46922 * 299.99556 * 5 2 1 35 35 H 1.08998 * 113.61515 * 25.42526 * 8 6 5 36 36 H 1.08999 * 113.66375 * 254.46895 * 8 6 5 37 37 H 0.96999 * 119.99857 * 74.14492 * 11 9 8 38 38 H 0.96698 * 114.00227 * 269.97874 * 16 15 14 39 39 H 1.08002 * 120.09528 * 180.02562 * 17 15 14 40 40 H 1.08000 * 126.63644 * 359.75947 * 20 19 18 41 41 H 1.08003 * 126.47630 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47084 * 304.94960 * 23 22 21 43 43 H 0.96703 * 113.99513 * 60.00256 * 24 23 22 44 44 H 1.48503 * 109.99810 * 58.67965 * 25 23 22 45 45 H 1.48497 * 110.00134 * 179.97438 * 25 23 22 46 46 H 1.07997 * 119.85853 * 179.72649 * 27 18 17 47 47 H 1.07997 * 119.90994 * 180.27269 * 28 27 18 48 48 H 1.09000 * 113.61383 * 105.38736 * 29 6 5 49 49 H 1.09005 * 113.61903 * 334.48002 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7056 -0.8185 1.7984 7 1 4.2207 -1.1761 0.9068 8 6 4.3278 0.4553 2.3986 9 6 5.2298 -0.4732 3.2288 10 1 6.1622 -0.7370 2.7295 11 7 5.4315 -0.0175 4.6064 12 6 6.6107 0.5233 4.9716 13 8 7.5073 0.6334 4.1572 14 6 6.8136 0.9810 6.3568 15 6 8.0412 1.5448 6.7380 16 8 9.0436 1.6706 5.8323 17 6 8.2248 1.9719 8.0407 18 6 7.1888 1.8400 8.9667 19 6 7.3810 2.2951 10.3572 20 6 6.4585 2.2249 11.3555 21 6 7.0631 2.7686 12.5050 22 6 8.3113 3.1407 12.1567 23 6 9.3270 3.7736 13.0727 24 8 9.6888 2.8450 14.0968 25 14 10.8418 4.2391 12.0931 26 8 8.4998 2.8531 10.8592 27 6 5.9697 1.2717 8.5795 28 6 5.7828 0.8546 7.2945 29 6 4.1318 -1.5405 3.0874 30 1 -0.3633 0.5970 0.8366 31 1 -0.3633 0.4260 -0.9352 32 1 -0.3633 -1.0229 0.0987 33 1 1.7610 -1.7370 1.6664 34 1 1.7611 -0.1171 2.4042 35 1 3.6315 1.0398 3.0000 36 1 4.8729 1.0596 1.6734 37 1 4.7163 -0.1050 5.2558 38 1 9.6340 0.9059 5.7903 39 1 9.1668 2.4070 8.3404 40 1 5.4552 1.8325 11.2794 41 1 6.6119 2.8693 13.4811 42 1 8.8994 4.6673 13.5271 43 1 10.0769 2.0241 13.7642 44 1 10.4735 5.1799 11.0048 45 1 11.8509 4.8648 12.9849 46 1 5.1721 1.1673 9.3001 47 1 4.8382 0.4210 7.0010 48 1 4.5189 -2.5452 2.9175 49 1 3.3819 -1.5027 3.8776 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_16534806_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:56 Heat of formation + Delta-G solvation = -95.164278 kcal Electronic energy + Delta-G solvation = -35015.668735 eV Core-core repulsion = 30005.330969 eV Total energy + Delta-G solvation = -5010.337766 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.121 amu Computer time = 3.89 seconds Orbital eigenvalues (eV) -43.77778 -41.69209 -40.60083 -39.04476 -38.13018 -37.98701 -37.83358 -37.02041 -34.99633 -34.25200 -33.39660 -31.47696 -31.22480 -30.61838 -30.17485 -27.16847 -26.91966 -25.03391 -24.15160 -23.71432 -22.41148 -21.89375 -21.36958 -21.01014 -19.93787 -19.70108 -18.75932 -18.55091 -18.00692 -17.74725 -17.58888 -17.41097 -17.15950 -16.92795 -16.66982 -16.46378 -16.21855 -16.04383 -15.89710 -15.80464 -15.39872 -14.99390 -14.75834 -14.43878 -14.37687 -14.28891 -14.26368 -14.05990 -13.91803 -13.78357 -13.66876 -13.63979 -13.57556 -13.31570 -13.07679 -12.98775 -12.89709 -12.78001 -12.71634 -12.23040 -12.13641 -12.08417 -11.84907 -11.60951 -11.29691 -11.16812 -10.77517 -10.76809 -10.62375 -10.10421 -9.99504 -9.05677 -5.09512 -1.10985 -0.82375 0.07129 0.62122 1.08325 1.36475 1.42739 1.66255 1.72410 1.88775 1.94376 2.02502 2.56037 2.60220 2.87504 2.97759 3.18131 3.18371 3.22699 3.31620 3.42731 3.48531 3.54786 3.65468 3.70819 3.75225 3.80978 3.85963 3.89288 3.90833 4.03630 4.11476 4.23060 4.24139 4.33418 4.49220 4.51207 4.55243 4.56331 4.58379 4.63189 4.73151 4.77828 4.80194 4.94914 4.96296 5.02999 5.08283 5.14205 5.33980 5.40801 5.45479 5.92210 6.32668 6.40953 6.66909 7.18973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.659 4.659 2 S 2.417 3.583 3 O -0.933 6.933 4 O -0.938 6.938 5 C -0.600 4.600 6 C -0.103 4.103 7 H 0.111 0.889 8 C -0.153 4.153 9 C 0.124 3.876 10 H 0.121 0.879 11 N -0.719 5.719 12 C 0.559 3.441 13 O -0.515 6.515 14 C -0.166 4.166 15 C 0.180 3.820 16 O -0.474 6.474 17 C -0.140 4.140 18 C 0.030 3.970 19 C 0.023 3.977 20 C -0.177 4.177 21 C -0.174 4.174 22 C -0.045 4.045 23 C -0.028 4.028 24 O -0.530 6.530 25 Si 0.700 3.300 26 O -0.161 6.161 27 C -0.117 4.117 28 C -0.065 4.065 29 C -0.130 4.130 30 H 0.128 0.872 31 H 0.131 0.869 32 H 0.128 0.872 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.399 0.601 38 H 0.399 0.601 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.155 0.845 42 H 0.134 0.866 43 H 0.384 0.616 44 H -0.252 1.252 45 H -0.245 1.245 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.084 0.916 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.250 -5.459 5.025 9.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.808 4.808 2 S 2.599 3.401 3 O -0.930 6.930 4 O -0.935 6.935 5 C -0.729 4.729 6 C -0.123 4.123 7 H 0.129 0.871 8 C -0.192 4.192 9 C 0.019 3.981 10 H 0.139 0.861 11 N -0.371 5.371 12 C 0.347 3.653 13 O -0.391 6.391 14 C -0.169 4.169 15 C 0.133 3.867 16 O -0.285 6.285 17 C -0.159 4.159 18 C 0.030 3.970 19 C -0.027 4.027 20 C -0.196 4.196 21 C -0.193 4.193 22 C -0.095 4.095 23 C -0.139 4.139 24 O -0.335 6.335 25 Si 0.599 3.401 26 O -0.058 6.058 27 C -0.135 4.135 28 C -0.083 4.083 29 C -0.170 4.170 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.147 0.853 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.111 0.889 36 H 0.105 0.895 37 H 0.235 0.765 38 H 0.258 0.742 39 H 0.162 0.838 40 H 0.174 0.826 41 H 0.173 0.827 42 H 0.151 0.849 43 H 0.232 0.768 44 H -0.176 1.176 45 H -0.169 1.169 46 H 0.156 0.844 47 H 0.153 0.847 48 H 0.102 0.898 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.695 -3.352 3.597 6.151 hybrid contribution -1.845 -0.672 1.395 2.409 sum -5.540 -4.025 4.992 8.474 Atomic orbital electron populations 1.30305 1.26884 1.11591 1.12022 1.07978 0.78322 0.76025 0.77768 1.93627 1.78803 1.34191 1.86362 1.93623 1.79007 1.67086 1.53767 1.30297 1.04809 1.14160 1.23605 1.22103 0.90766 0.99419 0.99971 0.87091 1.23734 0.99247 0.96319 0.99868 1.22496 0.98800 0.94745 0.82060 0.86107 1.45874 1.15548 1.63395 1.12290 1.18016 0.82489 0.77573 0.87246 1.90855 1.41827 1.54004 1.52366 1.20495 0.96314 1.05492 0.94645 1.18292 0.87965 0.93073 0.87387 1.84782 1.40832 1.44724 1.58170 1.21604 1.00334 1.02277 0.91681 1.17756 0.94144 0.97145 0.87973 1.20318 0.85721 1.03048 0.93584 1.21906 1.00857 1.04877 0.92004 1.21582 0.93968 1.03367 1.00391 1.23001 0.98412 1.05566 0.82531 1.24423 1.03142 0.94464 0.91823 1.86568 1.83254 1.31711 1.32010 0.94270 0.78377 0.87845 0.79570 1.83936 1.36590 1.61695 1.23594 1.20695 0.96286 0.99822 0.96660 1.20794 0.97868 0.97367 0.92294 1.23366 0.97831 0.98978 0.96777 0.85328 0.85092 0.85319 0.84493 0.84795 0.88856 0.89531 0.76518 0.74198 0.83769 0.82638 0.82701 0.84885 0.76810 1.17636 1.16949 0.84387 0.84682 0.89764 0.88976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 47. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.66 3.06 10.62 101.05 1.07 4.13 16 2 S 2.42 -4.22 5.35 -107.50 -0.58 -4.80 16 3 O -0.93 -2.25 18.10 -57.83 -1.05 -3.30 16 4 O -0.94 -2.36 18.10 -57.83 -1.05 -3.41 16 5 C -0.60 2.82 5.65 37.16 0.21 3.03 16 6 C -0.10 0.25 3.65 -89.72 -0.33 -0.07 16 7 H 0.11 -0.23 8.13 -51.93 -0.42 -0.65 16 8 C -0.15 0.15 7.45 -25.83 -0.19 -0.05 16 9 C 0.12 -0.14 4.21 -67.12 -0.28 -0.42 16 10 H 0.12 0.06 7.50 -51.93 -0.39 -0.33 16 11 N -0.72 0.95 5.31 -54.14 -0.29 0.67 16 12 C 0.56 1.08 7.75 -12.58 -0.10 0.98 16 13 O -0.51 -2.94 14.76 -16.70 -0.25 -3.19 16 14 C -0.17 -0.10 5.89 -104.79 -0.62 -0.72 16 15 C 0.18 0.27 6.71 -38.75 -0.26 0.01 16 16 O -0.47 -1.10 11.56 -40.70 -0.47 -1.57 16 17 C -0.14 -0.08 9.65 -39.05 -0.38 -0.46 16 18 C 0.03 0.00 5.87 -104.95 -0.62 -0.62 16 19 C 0.02 0.01 7.02 -36.55 -0.26 -0.24 16 20 C -0.18 0.04 10.26 -39.38 -0.40 -0.36 16 21 C -0.17 -0.04 10.78 -39.82 -0.43 -0.47 16 22 C -0.04 -0.02 6.21 -35.52 -0.22 -0.24 16 23 C -0.03 0.02 2.98 36.01 0.11 0.13 16 24 O -0.53 0.41 12.88 -35.23 -0.45 -0.04 16 25 Si 0.70 -0.70 32.11 -169.99 -5.46 -6.16 16 26 O -0.16 -0.17 8.79 4.75 0.04 -0.13 16 27 C -0.12 0.22 9.48 -39.60 -0.38 -0.15 16 28 C -0.06 0.14 9.47 -39.62 -0.38 -0.23 16 29 C -0.13 0.47 7.39 -25.93 -0.19 0.28 16 30 H 0.13 -0.82 8.14 -51.92 -0.42 -1.24 16 31 H 0.13 -0.56 8.14 -51.93 -0.42 -0.98 16 32 H 0.13 -0.82 8.14 -51.92 -0.42 -1.24 16 33 H 0.14 -0.96 8.14 -51.92 -0.42 -1.38 16 34 H 0.13 -0.93 7.86 -51.92 -0.41 -1.33 16 35 H 0.09 -0.19 7.91 -51.93 -0.41 -0.60 16 36 H 0.09 0.07 8.14 -51.93 -0.42 -0.35 16 37 H 0.40 -1.74 6.72 -40.82 -0.27 -2.02 16 38 H 0.40 -0.64 9.06 45.56 0.41 -0.23 16 39 H 0.14 -0.01 7.90 -52.49 -0.41 -0.43 16 40 H 0.16 -0.41 7.24 -52.49 -0.38 -0.79 16 41 H 0.16 -0.14 8.06 -52.48 -0.42 -0.56 16 42 H 0.13 -0.16 7.96 -51.93 -0.41 -0.58 16 43 H 0.38 -1.74 8.70 45.56 0.40 -1.34 16 44 H -0.25 -0.54 7.11 56.52 0.40 -0.14 16 45 H -0.25 -0.35 7.11 56.52 0.40 0.05 16 46 H 0.14 -0.58 6.95 -52.49 -0.37 -0.95 16 47 H 0.14 -0.74 6.38 -52.49 -0.33 -1.07 16 48 H 0.08 -0.32 8.14 -51.93 -0.42 -0.74 16 49 H 0.09 -0.49 8.07 -51.93 -0.42 -0.91 16 LS Contribution 429.48 15.07 6.47 6.47 Total: 0.00 -16.46 429.48 -12.28 -28.74 By element: Atomic # 1 Polarization: -12.24 SS G_CDS: -5.58 Total: -17.81 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -3.63 Total: 4.53 kcal Atomic # 7 Polarization: 0.95 SS G_CDS: -0.29 Total: 0.67 kcal Atomic # 8 Polarization: -8.41 SS G_CDS: -3.22 Total: -11.63 kcal Atomic # 14 Polarization: -0.70 SS G_CDS: -5.46 Total: -6.16 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -0.58 Total: -4.80 kcal Total LS contribution 6.47 Total: 6.47 kcal Total: -16.46 -12.28 -28.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.419 kcal (2) G-P(sol) polarization free energy of solvation -16.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.89 seconds