Wall clock time and date at job start Tue Mar 9 2021 12:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42096 * 108.57924 * 2 1 4 4 O 1.42098 * 108.57619 * 228.97681 * 2 1 3 5 5 C 1.81399 * 101.92273 * 114.49065 * 2 1 3 6 6 C 1.53004 * 109.47189 * 180.02562 * 5 2 1 7 7 H 1.08997 * 112.84765 * 316.19207 * 6 5 2 8 8 C 1.53953 * 113.74142 * 87.39988 * 6 5 2 9 9 C 1.53779 * 87.01645 * 139.94352 * 8 6 5 10 10 H 1.09007 * 113.61357 * 89.23070 * 9 8 6 11 11 N 1.46498 * 113.61398 * 220.04130 * 9 8 6 12 12 C 1.34779 * 120.00686 * 254.13699 * 11 9 8 13 13 O 1.21626 * 119.99284 * 0.02562 * 12 11 9 14 14 C 1.47290 * 120.00122 * 180.02562 * 12 11 9 15 15 C 1.40372 * 120.04196 * 180.02562 * 14 12 11 16 16 O 1.35679 * 120.13897 * 0.03573 * 15 14 12 17 17 C 1.38317 * 119.72402 * 180.02562 * 15 14 12 18 18 C 1.39574 * 119.81356 * 359.97438 * 17 15 14 19 19 C 1.47564 * 119.95358 * 180.02562 * 18 17 15 20 20 C 1.36105 * 125.93937 * 180.02562 * 19 18 17 21 21 C 1.40800 * 106.73149 * 180.02562 * 20 19 18 22 22 C 1.34828 * 107.04950 * 0.02562 * 21 20 19 23 23 C 1.50704 * 125.65392 * 180.02562 * 22 21 20 24 24 O 1.42901 * 109.47055 * 64.94671 * 23 22 21 25 25 Si 1.86298 * 109.47325 * 184.94819 * 23 22 21 26 26 O 1.34228 * 108.69468 * 359.97438 * 22 21 20 27 27 C 1.39967 * 120.08547 * 0.28144 * 18 17 15 28 28 C 1.36387 * 120.27960 * 359.43640 * 27 18 17 29 29 C 1.53773 * 113.61313 * 184.99725 * 6 5 2 30 30 H 1.09006 * 109.46713 * 305.50986 * 1 2 3 31 31 H 1.08998 * 109.47060 * 65.50704 * 1 2 3 32 32 H 1.09004 * 109.47033 * 185.51281 * 1 2 3 33 33 H 1.09004 * 109.47391 * 59.99462 * 5 2 1 34 34 H 1.09004 * 109.46922 * 299.99556 * 5 2 1 35 35 H 1.08998 * 113.61515 * 25.42526 * 8 6 5 36 36 H 1.08999 * 113.66375 * 254.46895 * 8 6 5 37 37 H 0.96999 * 119.99857 * 74.14492 * 11 9 8 38 38 H 0.96698 * 114.00227 * 269.97874 * 16 15 14 39 39 H 1.08002 * 120.09528 * 180.02562 * 17 15 14 40 40 H 1.08000 * 126.63644 * 359.75947 * 20 19 18 41 41 H 1.08003 * 126.47630 * 179.97438 * 21 20 19 42 42 H 1.09002 * 109.47084 * 304.94960 * 23 22 21 43 43 H 0.96703 * 113.99513 * 60.00256 * 24 23 22 44 44 H 1.48503 * 109.99810 * 58.67965 * 25 23 22 45 45 H 1.48497 * 110.00134 * 179.97438 * 25 23 22 46 46 H 1.07997 * 119.85853 * 179.72649 * 27 18 17 47 47 H 1.07997 * 119.90994 * 180.27269 * 28 27 18 48 48 H 1.09000 * 113.61383 * 105.38736 * 29 6 5 49 49 H 1.09005 * 113.61903 * 334.48002 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3469 0.0000 4 8 2.2667 -0.8841 -1.0162 5 6 2.1888 -0.7358 1.6152 6 6 3.7056 -0.8185 1.7984 7 1 4.2207 -1.1761 0.9068 8 6 4.3278 0.4553 2.3986 9 6 5.2298 -0.4732 3.2288 10 1 6.1622 -0.7370 2.7295 11 7 5.4315 -0.0175 4.6064 12 6 6.6107 0.5233 4.9716 13 8 7.5073 0.6334 4.1572 14 6 6.8136 0.9810 6.3568 15 6 8.0412 1.5448 6.7380 16 8 9.0436 1.6706 5.8323 17 6 8.2248 1.9719 8.0407 18 6 7.1888 1.8400 8.9667 19 6 7.3810 2.2951 10.3572 20 6 6.4585 2.2249 11.3555 21 6 7.0631 2.7686 12.5050 22 6 8.3113 3.1407 12.1567 23 6 9.3270 3.7736 13.0727 24 8 9.6888 2.8450 14.0968 25 14 10.8418 4.2391 12.0931 26 8 8.4998 2.8531 10.8592 27 6 5.9697 1.2717 8.5795 28 6 5.7828 0.8546 7.2945 29 6 4.1318 -1.5405 3.0874 30 1 -0.3633 0.5970 0.8366 31 1 -0.3633 0.4260 -0.9352 32 1 -0.3633 -1.0229 0.0987 33 1 1.7610 -1.7370 1.6664 34 1 1.7611 -0.1171 2.4042 35 1 3.6315 1.0398 3.0000 36 1 4.8729 1.0596 1.6734 37 1 4.7163 -0.1050 5.2558 38 1 9.6340 0.9059 5.7903 39 1 9.1668 2.4070 8.3404 40 1 5.4552 1.8325 11.2794 41 1 6.6119 2.8693 13.4811 42 1 8.8994 4.6673 13.5271 43 1 10.0769 2.0241 13.7642 44 1 10.4735 5.1799 11.0048 45 1 11.8509 4.8648 12.9849 46 1 5.1721 1.1673 9.3001 47 1 4.8382 0.4210 7.0010 48 1 4.5189 -2.5452 2.9175 49 1 3.3819 -1.5027 3.8776 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_12807986.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:57:55 Heat of formation + Delta-G solvation = -104.762724 kcal Electronic energy + Delta-G solvation = -35016.084955 eV Core-core repulsion = 30005.330969 eV Total energy + Delta-G solvation = -5010.753986 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 408.121 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.74331 -41.68798 -40.49985 -39.07761 -38.08631 -37.96414 -37.82081 -36.99086 -35.03179 -34.21147 -33.31653 -31.37855 -31.04950 -30.43332 -29.95477 -27.12208 -26.73418 -24.97342 -24.07192 -23.61286 -22.36714 -21.90320 -21.34281 -20.85528 -19.81229 -19.66207 -18.71420 -18.51999 -17.91261 -17.70537 -17.48648 -17.35695 -17.00842 -16.84927 -16.65677 -16.41365 -16.11859 -16.04663 -15.87123 -15.74271 -15.42305 -14.83001 -14.56680 -14.40606 -14.32554 -14.03594 -13.98409 -13.89832 -13.87490 -13.62177 -13.55584 -13.51226 -13.43241 -13.19836 -13.05083 -12.99463 -12.82769 -12.70079 -12.59949 -12.27473 -12.03748 -11.93477 -11.85169 -11.47705 -11.12743 -11.08872 -10.86217 -10.73532 -10.58372 -10.08372 -9.94125 -9.01139 -5.06724 -0.89540 -0.78788 0.15666 0.64656 1.12625 1.39410 1.46023 1.74331 1.86397 1.91956 1.92945 2.07332 2.64982 2.78364 3.02306 3.12432 3.29097 3.37614 3.41525 3.45943 3.60761 3.64103 3.70098 3.79377 3.87541 3.99250 4.01522 4.07657 4.10501 4.18841 4.23064 4.31204 4.34694 4.41056 4.54765 4.64800 4.70245 4.73925 4.74986 4.80416 4.83733 4.90039 4.97396 4.99316 5.05723 5.07380 5.10737 5.19855 5.23615 5.43032 5.52707 5.56428 5.97027 6.50169 6.59666 6.71070 7.18953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.401 3.599 3 O -0.990 6.990 4 O -0.996 6.996 5 C -0.577 4.577 6 C -0.112 4.112 7 H 0.094 0.906 8 C -0.161 4.161 9 C 0.113 3.887 10 H 0.092 0.908 11 N -0.699 5.699 12 C 0.554 3.446 13 O -0.567 6.567 14 C -0.180 4.180 15 C 0.159 3.841 16 O -0.497 6.497 17 C -0.153 4.153 18 C 0.025 3.975 19 C 0.005 3.995 20 C -0.172 4.172 21 C -0.183 4.183 22 C -0.054 4.054 23 C -0.023 4.023 24 O -0.540 6.540 25 Si 0.768 3.232 26 O -0.175 6.175 27 C -0.109 4.109 28 C -0.050 4.050 29 C -0.108 4.108 30 H 0.155 0.845 31 H 0.125 0.875 32 H 0.155 0.845 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.110 0.890 36 H 0.052 0.948 37 H 0.418 0.582 38 H 0.409 0.591 39 H 0.139 0.861 40 H 0.183 0.817 41 H 0.166 0.834 42 H 0.138 0.862 43 H 0.399 0.601 44 H -0.299 1.299 45 H -0.277 1.277 46 H 0.171 0.829 47 H 0.176 0.824 48 H 0.089 0.911 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.169 -7.318 7.665 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.590 3.410 3 O -0.987 6.987 4 O -0.993 6.993 5 C -0.709 4.709 6 C -0.132 4.132 7 H 0.113 0.887 8 C -0.199 4.199 9 C 0.008 3.992 10 H 0.111 0.889 11 N -0.352 5.352 12 C 0.342 3.658 13 O -0.446 6.446 14 C -0.184 4.184 15 C 0.112 3.888 16 O -0.310 6.310 17 C -0.172 4.172 18 C 0.024 3.976 19 C -0.044 4.044 20 C -0.190 4.190 21 C -0.202 4.202 22 C -0.104 4.104 23 C -0.134 4.134 24 O -0.348 6.348 25 Si 0.673 3.327 26 O -0.073 6.073 27 C -0.127 4.127 28 C -0.068 4.068 29 C -0.147 4.147 30 H 0.173 0.827 31 H 0.144 0.856 32 H 0.173 0.827 33 H 0.191 0.809 34 H 0.187 0.813 35 H 0.128 0.872 36 H 0.071 0.929 37 H 0.257 0.743 38 H 0.269 0.731 39 H 0.156 0.844 40 H 0.201 0.799 41 H 0.183 0.817 42 H 0.155 0.845 43 H 0.250 0.750 44 H -0.226 1.226 45 H -0.203 1.203 46 H 0.188 0.812 47 H 0.193 0.807 48 H 0.108 0.892 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -7.622 -5.243 6.221 11.149 hybrid contribution -0.648 -0.069 0.623 0.902 sum -8.270 -5.312 6.844 11.977 Atomic orbital electron populations 1.30130 1.22405 1.13887 1.13026 1.07950 0.79847 0.74503 0.78653 1.93557 1.80790 1.36837 1.87540 1.93549 1.81003 1.67688 1.57061 1.30121 1.03243 1.16465 1.21039 1.22121 0.92365 0.98510 1.00169 0.88736 1.23806 0.99630 0.96866 0.99646 1.22505 0.98553 0.96257 0.81928 0.88942 1.45720 1.15010 1.61908 1.12568 1.18337 0.82747 0.77235 0.87470 1.90828 1.43685 1.56317 1.53813 1.20544 0.96913 1.06335 0.94571 1.18532 0.88357 0.94289 0.87606 1.84736 1.41618 1.45799 1.58857 1.21582 1.00816 1.03060 0.91733 1.17965 0.94783 0.97258 0.87582 1.20591 0.85963 1.03746 0.94125 1.22244 1.01693 1.03945 0.91162 1.21837 0.93937 1.03340 1.01132 1.23223 0.98983 1.05778 0.82429 1.24384 1.02640 0.94702 0.91639 1.86534 1.83406 1.32607 1.32233 0.93389 0.76775 0.86318 0.76200 1.83922 1.37280 1.62070 1.24010 1.21067 0.96045 0.98316 0.97282 1.21182 0.98286 0.95906 0.91413 1.23336 0.96899 0.97975 0.96505 0.82697 0.85598 0.82713 0.80892 0.81265 0.87154 0.92881 0.74320 0.73124 0.84361 0.79950 0.81664 0.84468 0.74980 1.22622 1.20308 0.81170 0.80703 0.89189 0.85583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.29 10.62 113.37 1.20 8.50 16 2 S 2.40 -7.34 5.35 -56.49 -0.30 -7.64 16 3 O -0.99 -6.82 18.10 -127.37 -2.30 -9.13 16 4 O -1.00 -7.01 18.10 -127.37 -2.30 -9.31 16 5 C -0.58 6.89 5.65 71.98 0.41 7.30 16 6 C -0.11 0.61 3.65 -10.21 -0.04 0.57 16 7 H 0.09 -0.21 8.13 -2.39 -0.02 -0.23 16 8 C -0.16 0.19 7.45 31.18 0.23 0.42 16 9 C 0.11 -0.20 4.21 45.51 0.19 -0.01 16 10 H 0.09 0.37 7.50 -2.38 -0.02 0.35 16 11 N -0.70 2.35 5.31 -443.43 -2.35 0.00 16 12 C 0.55 2.75 7.75 86.62 0.67 3.42 16 13 O -0.57 -8.27 14.76 16.88 0.25 -8.02 16 14 C -0.18 -0.27 5.89 -19.97 -0.12 -0.39 16 15 C 0.16 0.78 6.71 22.81 0.15 0.94 16 16 O -0.50 -3.97 11.56 -68.98 -0.80 -4.77 16 17 C -0.15 -0.42 9.65 22.61 0.22 -0.21 16 18 C 0.02 -0.01 5.87 -20.08 -0.12 -0.13 16 19 C 0.01 0.00 7.02 24.24 0.17 0.17 16 20 C -0.17 0.40 10.26 22.40 0.23 0.63 16 21 C -0.18 0.13 10.78 22.11 0.24 0.36 16 22 C -0.05 -0.03 6.21 24.90 0.15 0.12 16 23 C -0.02 0.04 2.98 71.24 0.21 0.25 16 24 O -0.54 1.14 12.88 -148.98 -1.92 -0.78 16 25 Si 0.77 -0.55 32.11 68.60 2.20 1.65 16 26 O -0.18 -0.46 8.79 -5.92 -0.05 -0.52 16 27 C -0.11 0.69 9.48 22.26 0.21 0.90 16 28 C -0.05 0.33 9.47 22.24 0.21 0.54 16 29 C -0.11 1.02 7.39 31.12 0.23 1.25 16 30 H 0.15 -2.52 8.14 -2.39 -0.02 -2.54 16 31 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 32 H 0.15 -2.51 8.14 -2.39 -0.02 -2.53 16 33 H 0.17 -3.21 8.14 -2.39 -0.02 -3.23 16 34 H 0.17 -3.13 7.86 -2.39 -0.02 -3.15 16 35 H 0.11 -0.56 7.91 -2.39 -0.02 -0.58 16 36 H 0.05 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.42 -4.90 6.72 -92.71 -0.62 -5.52 16 38 H 0.41 0.24 9.06 -74.06 -0.67 -0.43 16 39 H 0.14 0.37 7.90 -2.91 -0.02 0.35 16 40 H 0.18 -1.60 7.24 -2.91 -0.02 -1.62 16 41 H 0.17 -0.55 8.06 -2.91 -0.02 -0.57 16 42 H 0.14 -0.35 7.96 -2.39 -0.02 -0.37 16 43 H 0.40 -3.87 8.70 -74.06 -0.64 -4.52 16 44 H -0.30 -2.10 7.11 99.48 0.71 -1.39 16 45 H -0.28 -1.21 7.11 99.48 0.71 -0.50 16 46 H 0.17 -2.19 6.95 -2.91 -0.02 -2.21 16 47 H 0.18 -2.70 6.38 -2.91 -0.02 -2.72 16 48 H 0.09 -0.87 8.14 -2.39 -0.02 -0.89 16 49 H 0.13 -2.00 8.07 -2.38 -0.02 -2.02 16 Total: 0.00 -45.17 429.48 -3.98 -49.15 By element: Atomic # 1 Polarization: -34.40 SS G_CDS: -0.86 Total: -35.27 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 4.46 Total: 24.63 kcal Atomic # 7 Polarization: 2.35 SS G_CDS: -2.35 Total: 0.00 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -7.13 Total: -32.52 kcal Atomic # 14 Polarization: -0.55 SS G_CDS: 2.20 Total: 1.65 kcal Atomic # 16 Polarization: -7.34 SS G_CDS: -0.30 Total: -7.64 kcal Total: -45.17 -3.98 -49.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_12807986.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.614 kcal (2) G-P(sol) polarization free energy of solvation -45.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds