Wall clock time and date at job start Tue Mar 9 2021 12:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81404 * 1 3 3 O 1.42100 * 108.57850 * 2 1 4 4 O 1.42099 * 108.57828 * 228.97605 * 2 1 3 5 5 C 1.81392 * 101.91916 * 114.48770 * 2 1 3 6 6 C 1.52999 * 109.47423 * 179.97438 * 5 2 1 7 7 H 1.09004 * 112.90379 * 316.25640 * 6 5 2 8 8 C 1.53783 * 113.61443 * 87.49842 * 6 5 2 9 9 C 1.53778 * 87.08196 * 139.98812 * 8 6 5 10 10 H 1.08999 * 113.69404 * 89.12575 * 9 8 6 11 11 N 1.46503 * 113.61654 * 220.02307 * 9 8 6 12 12 C 1.34771 * 120.00085 * 252.49603 * 11 9 8 13 13 O 1.21574 * 119.99838 * 359.97438 * 12 11 9 14 14 C 1.47716 * 120.00142 * 179.97438 * 12 11 9 15 15 C 1.39713 * 120.02457 * 179.97438 * 14 12 11 16 16 C 1.37666 * 119.97554 * 180.02562 * 15 14 12 17 17 C 1.39502 * 120.02347 * 0.02562 * 16 15 14 18 18 C 1.48276 * 119.97511 * 179.97438 * 17 16 15 19 19 C 1.39407 * 120.12874 * 179.97438 * 18 17 16 20 20 C 1.37999 * 119.87420 * 180.25876 * 19 18 17 21 21 C 1.38341 * 120.12317 * 359.43918 * 20 19 18 22 22 C 1.50703 * 119.87144 * 180.25838 * 21 20 19 23 23 O 1.42890 * 109.47331 * 245.30334 * 22 21 20 24 24 Si 1.86300 * 109.46886 * 5.30292 * 22 21 20 25 25 C 1.38333 * 120.25645 * 0.56382 * 21 20 19 26 26 C 1.37996 * 120.12923 * 359.71608 * 25 21 20 27 27 C 1.39499 * 120.05055 * 0.25045 * 17 16 15 28 28 C 1.37670 * 120.02485 * 359.48968 * 27 17 16 29 29 C 1.53777 * 113.61951 * 185.00071 * 6 5 2 30 30 H 1.09000 * 109.47337 * 305.51873 * 1 2 3 31 31 H 1.09004 * 109.46836 * 65.50959 * 1 2 3 32 32 H 1.08997 * 109.47109 * 185.50867 * 1 2 3 33 33 H 1.08997 * 109.47635 * 59.99855 * 5 2 1 34 34 H 1.09000 * 109.47336 * 299.99869 * 5 2 1 35 35 H 1.09000 * 113.61157 * 25.43894 * 8 6 5 36 36 H 1.09001 * 113.61632 * 254.53415 * 8 6 5 37 37 H 0.97003 * 119.99810 * 72.49040 * 11 9 8 38 38 H 1.07992 * 120.01153 * 0.02562 * 15 14 12 39 39 H 1.07998 * 119.98598 * 179.97438 * 16 15 14 40 40 H 1.08002 * 120.05963 * 359.97438 * 19 18 17 41 41 H 1.07998 * 119.93991 * 179.72489 * 20 19 18 42 42 H 1.09001 * 109.46734 * 125.30006 * 22 21 20 43 43 H 0.96698 * 114.00492 * 59.99980 * 23 22 21 44 44 H 1.48500 * 110.00288 * 58.68015 * 24 22 21 45 45 H 1.48498 * 109.99902 * 179.97438 * 24 22 21 46 46 H 1.08004 * 119.93400 * 179.69927 * 25 21 20 47 47 H 1.08002 * 120.06966 * 179.97438 * 26 25 21 48 48 H 1.07999 * 119.99042 * 179.72366 * 27 17 16 49 49 H 1.07996 * 120.01710 * 180.24763 * 28 27 17 50 50 H 1.09002 * 113.61591 * 105.47233 * 29 6 5 51 51 H 1.08995 * 113.61134 * 334.56291 * 29 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2668 1.3470 0.0000 4 8 2.2668 -0.8841 -1.0162 5 6 2.1887 -0.7357 1.6152 6 6 3.7054 -0.8196 1.7980 7 1 4.2210 -1.1768 0.9065 8 6 4.3248 0.4530 2.3995 9 6 5.2291 -0.4738 3.2290 10 1 6.1617 -0.7372 2.7300 11 7 5.4300 -0.0184 4.6068 12 6 6.6189 0.4945 4.9804 13 8 7.5249 0.5788 4.1741 14 6 6.8214 0.9542 6.3696 15 6 8.0539 1.4855 6.7575 16 6 8.2416 1.9132 8.0525 17 6 7.2018 1.8157 8.9774 18 6 7.4053 2.2761 10.3721 19 6 6.3683 2.1807 11.2989 20 6 6.5618 2.6157 12.5942 21 6 7.7856 3.1350 12.9766 22 6 7.9925 3.6031 14.3941 23 8 8.2106 5.0152 14.4025 24 14 6.4813 3.2021 15.4072 25 6 8.8183 3.2322 12.0614 26 6 8.6346 2.8057 10.7619 27 6 5.9726 1.2801 8.5927 28 6 5.7809 0.8567 7.2968 29 6 4.1316 -1.5418 3.0870 30 1 -0.3634 0.5970 0.8364 31 1 -0.3633 0.4260 -0.9353 32 1 -0.3633 -1.0229 0.0986 33 1 1.7610 -1.7369 1.6665 34 1 1.7610 -0.1171 2.4042 35 1 3.6273 1.0356 3.0013 36 1 4.8683 1.0588 1.6744 37 1 4.7072 -0.0859 5.2502 38 1 8.8591 1.5607 6.0418 39 1 9.1944 2.3235 8.3527 40 1 5.4138 1.7713 11.0025 41 1 5.7577 2.5464 13.3118 42 1 8.8599 3.0989 14.8202 43 1 7.4774 5.5286 14.0367 44 1 6.2251 1.7396 15.3804 45 1 6.6729 3.6580 16.8074 46 1 9.7701 3.6429 12.3643 47 1 9.4414 2.8824 10.0480 48 1 5.1697 1.2010 9.3107 49 1 4.8279 0.4458 6.9981 50 1 4.5192 -2.5462 2.9171 51 1 3.3813 -1.5044 3.8768 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13158362.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:08 Heat of formation + Delta-G solvation = -57.595519 kcal Electronic energy + Delta-G solvation = -33287.333710 eV Core-core repulsion = 28632.225672 eV Total energy + Delta-G solvation = -4655.108038 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.138 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.60508 -40.88148 -39.95098 -38.97546 -37.95952 -37.50509 -36.98687 -35.11419 -33.92623 -32.57990 -31.66809 -31.24152 -30.59350 -29.97919 -27.07340 -26.74555 -25.02557 -24.63403 -23.58033 -22.55411 -22.18319 -21.38860 -20.79005 -19.79142 -19.15076 -18.44789 -17.91639 -17.68905 -17.45644 -17.00286 -16.83338 -16.79806 -16.35805 -16.21231 -16.08377 -16.02965 -15.68933 -15.39629 -15.23555 -14.91746 -14.81314 -14.65001 -14.35236 -14.22203 -14.07032 -13.98930 -13.89270 -13.62088 -13.57800 -13.44718 -13.26298 -13.15603 -13.04949 -12.99052 -12.73406 -12.61898 -12.54406 -12.09889 -12.02121 -11.94557 -11.92855 -11.59843 -11.49540 -11.15454 -10.98164 -10.76854 -10.40795 -10.12627 -10.05989 -9.95496 -9.07193 -4.99886 -0.89236 -0.69105 0.35294 0.40757 0.50053 1.31584 1.64311 1.77256 1.93042 1.98103 2.06470 2.60456 2.78476 3.01215 3.12838 3.36158 3.40463 3.45119 3.55014 3.61209 3.64995 3.70160 3.76202 3.79559 3.89264 4.00975 4.05672 4.08056 4.11119 4.18985 4.25706 4.30298 4.34579 4.37765 4.47229 4.54358 4.64551 4.67463 4.72634 4.74964 4.82247 4.90478 4.91352 4.96086 4.99921 5.04121 5.09049 5.12485 5.18597 5.20984 5.27963 5.41017 5.50477 5.51782 5.65951 5.80216 5.93553 6.46584 6.76240 7.13266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.642 4.642 2 S 2.402 3.598 3 O -0.989 6.989 4 O -0.996 6.996 5 C -0.578 4.578 6 C -0.111 4.111 7 H 0.095 0.905 8 C -0.158 4.158 9 C 0.109 3.891 10 H 0.092 0.908 11 N -0.697 5.697 12 C 0.554 3.446 13 O -0.586 6.586 14 C -0.153 4.153 15 C -0.074 4.074 16 C -0.126 4.126 17 C -0.023 4.023 18 C -0.060 4.060 19 C -0.099 4.099 20 C -0.116 4.116 21 C -0.120 4.120 22 C -0.079 4.079 23 O -0.557 6.557 24 Si 0.781 3.219 25 C -0.105 4.105 26 C -0.115 4.115 27 C -0.116 4.116 28 C -0.071 4.071 29 C -0.110 4.110 30 H 0.155 0.845 31 H 0.126 0.874 32 H 0.154 0.846 33 H 0.172 0.828 34 H 0.170 0.830 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.418 0.582 38 H 0.122 0.878 39 H 0.140 0.860 40 H 0.159 0.841 41 H 0.152 0.848 42 H 0.103 0.897 43 H 0.395 0.605 44 H -0.283 1.283 45 H -0.304 1.304 46 H 0.125 0.875 47 H 0.134 0.866 48 H 0.165 0.835 49 H 0.164 0.836 50 H 0.087 0.913 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.023 -2.617 6.325 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.794 4.794 2 S 2.592 3.408 3 O -0.986 6.986 4 O -0.993 6.993 5 C -0.709 4.709 6 C -0.131 4.131 7 H 0.113 0.887 8 C -0.197 4.197 9 C 0.004 3.996 10 H 0.110 0.890 11 N -0.349 5.349 12 C 0.343 3.657 13 O -0.467 6.467 14 C -0.156 4.156 15 C -0.093 4.093 16 C -0.144 4.144 17 C -0.023 4.023 18 C -0.060 4.060 19 C -0.117 4.117 20 C -0.134 4.134 21 C -0.120 4.120 22 C -0.189 4.189 23 O -0.365 6.365 24 Si 0.687 3.313 25 C -0.124 4.124 26 C -0.133 4.133 27 C -0.133 4.133 28 C -0.089 4.089 29 C -0.149 4.149 30 H 0.174 0.826 31 H 0.144 0.856 32 H 0.172 0.828 33 H 0.190 0.810 34 H 0.188 0.812 35 H 0.131 0.869 36 H 0.074 0.926 37 H 0.258 0.742 38 H 0.140 0.860 39 H 0.158 0.842 40 H 0.177 0.823 41 H 0.169 0.831 42 H 0.120 0.880 43 H 0.245 0.755 44 H -0.210 1.210 45 H -0.232 1.232 46 H 0.143 0.857 47 H 0.152 0.848 48 H 0.182 0.818 49 H 0.182 0.818 50 H 0.106 0.894 51 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.576 -2.865 5.980 12.483 hybrid contribution 0.730 -0.190 0.115 0.763 sum -9.846 -3.055 6.095 11.976 Atomic orbital electron populations 1.30128 1.22370 1.13869 1.13063 1.07922 0.79850 0.74500 0.78573 1.93557 1.80786 1.36753 1.87508 1.93550 1.81019 1.67718 1.57045 1.30126 1.03145 1.16466 1.21190 1.22087 0.92467 0.98526 1.00050 0.88713 1.23770 0.99531 0.96824 0.99570 1.22552 0.98604 0.96502 0.81950 0.89005 1.45725 1.13944 1.62469 1.12768 1.18667 0.82547 0.76703 0.87786 1.90779 1.43751 1.57335 1.54841 1.19999 0.96629 1.05664 0.93286 1.21232 0.96577 0.95192 0.96297 1.21343 0.99952 1.00717 0.92403 1.19155 0.94390 0.96609 0.92130 1.18943 0.94687 0.99979 0.92409 1.21529 0.99459 0.98440 0.92252 1.21183 0.96374 0.98894 0.96910 1.20546 0.94737 1.00227 0.96482 1.25262 1.11287 0.84877 0.97446 1.86475 1.48246 1.15730 1.86069 0.93748 0.81447 0.79803 0.76303 1.21060 0.99331 0.98956 0.93004 1.21491 0.97258 0.98047 0.96483 1.21525 0.97054 0.98085 0.96684 1.21517 0.98367 0.96719 0.92332 1.23353 0.96944 0.97959 0.96649 0.82648 0.85566 0.82772 0.80995 0.81195 0.86925 0.92628 0.74220 0.85987 0.84222 0.82320 0.83098 0.87951 0.75469 1.20959 1.23196 0.85710 0.84804 0.81760 0.81827 0.89394 0.85612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 7.47 10.62 113.37 1.20 8.67 16 2 S 2.40 -8.04 5.35 -56.49 -0.30 -8.34 16 3 O -0.99 -6.28 18.10 -127.37 -2.30 -8.58 16 4 O -1.00 -6.85 18.10 -127.37 -2.30 -9.16 16 5 C -0.58 6.93 5.64 71.98 0.41 7.34 16 6 C -0.11 0.59 3.66 -10.27 -0.04 0.55 16 7 H 0.09 -0.20 8.13 -2.38 -0.02 -0.22 16 8 C -0.16 0.23 7.43 31.12 0.23 0.46 16 9 C 0.11 -0.13 4.24 45.52 0.19 0.06 16 10 H 0.09 0.45 7.46 -2.39 -0.02 0.43 16 11 N -0.70 1.73 5.30 -443.02 -2.35 -0.62 16 12 C 0.55 3.22 7.77 86.75 0.67 3.89 16 13 O -0.59 -9.24 15.93 -3.95 -0.06 -9.30 16 14 C -0.15 -0.33 5.88 -20.06 -0.12 -0.45 16 15 C -0.07 -0.32 9.58 22.49 0.22 -0.11 16 16 C -0.13 -0.15 9.41 22.44 0.21 0.06 16 17 C -0.02 0.03 5.88 -20.00 -0.12 -0.09 16 18 C -0.06 0.08 5.88 -20.04 -0.12 -0.04 16 19 C -0.10 0.48 9.43 22.49 0.21 0.69 16 20 C -0.12 0.53 8.65 22.24 0.19 0.73 16 21 C -0.12 0.17 5.36 -19.82 -0.11 0.06 16 22 C -0.08 0.11 2.80 71.24 0.20 0.31 16 23 O -0.56 0.14 12.83 -148.98 -1.91 -1.77 16 24 Si 0.78 -3.00 29.79 68.60 2.04 -0.96 16 25 C -0.11 -0.05 9.67 22.23 0.21 0.16 16 26 C -0.12 0.01 9.43 22.49 0.21 0.22 16 27 C -0.12 0.64 9.41 22.44 0.21 0.85 16 28 C -0.07 0.38 9.52 22.49 0.21 0.59 16 29 C -0.11 0.96 7.39 31.12 0.23 1.19 16 30 H 0.16 -2.59 8.14 -2.39 -0.02 -2.61 16 31 H 0.13 -1.23 8.14 -2.39 -0.02 -1.25 16 32 H 0.15 -2.52 8.14 -2.39 -0.02 -2.54 16 33 H 0.17 -3.16 8.14 -2.39 -0.02 -3.18 16 34 H 0.17 -3.18 7.84 -2.39 -0.02 -3.20 16 35 H 0.11 -0.64 7.90 -2.39 -0.02 -0.66 16 36 H 0.05 0.26 8.14 -2.39 -0.02 0.24 16 37 H 0.42 -4.47 6.74 -92.71 -0.63 -5.10 16 38 H 0.12 0.84 7.64 -2.91 -0.02 0.82 16 39 H 0.14 -0.19 6.19 -2.91 -0.02 -0.21 16 40 H 0.16 -1.75 6.19 -2.91 -0.02 -1.77 16 41 H 0.15 -1.44 4.89 -2.91 -0.01 -1.46 16 42 H 0.10 0.03 7.96 -2.39 -0.02 0.01 16 43 H 0.40 -3.35 8.70 -74.06 -0.64 -3.99 16 44 H -0.28 -0.12 7.11 99.48 0.71 0.59 16 45 H -0.30 -1.33 7.11 99.48 0.71 -0.63 16 46 H 0.12 0.05 8.06 -2.91 -0.02 0.03 16 47 H 0.13 -0.29 6.19 -2.91 -0.02 -0.31 16 48 H 0.17 -1.98 6.19 -2.91 -0.02 -2.00 16 49 H 0.16 -2.20 6.39 -2.91 -0.02 -2.22 16 50 H 0.09 -0.76 8.14 -2.39 -0.02 -0.78 16 51 H 0.13 -1.90 8.08 -2.39 -0.02 -1.91 16 Total: 0.00 -42.36 430.65 -3.10 -45.46 By element: Atomic # 1 Polarization: -31.67 SS G_CDS: -0.24 Total: -31.90 kcal Atomic # 6 Polarization: 20.85 SS G_CDS: 4.32 Total: 25.17 kcal Atomic # 7 Polarization: 1.73 SS G_CDS: -2.35 Total: -0.62 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -6.58 Total: -28.81 kcal Atomic # 14 Polarization: -3.00 SS G_CDS: 2.04 Total: -0.96 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -0.30 Total: -8.34 kcal Total: -42.36 -3.10 -45.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13158362.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.131 kcal (2) G-P(sol) polarization free energy of solvation -42.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds