Wall clock time and date at job start Tue Mar 9 2021 12:58:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42096 * 108.58038 * 2 1 4 4 O 1.42109 * 108.57697 * 131.02627 * 2 1 3 5 5 C 1.81405 * 101.92427 * 245.51136 * 2 1 3 6 6 C 1.52993 * 109.47204 * 179.97438 * 5 2 1 7 7 H 1.09003 * 112.85072 * 43.80405 * 6 5 2 8 8 C 1.53777 * 113.61407 * 175.00404 * 6 5 2 9 9 C 1.53788 * 87.08500 * 139.98057 * 8 6 5 10 10 H 1.08997 * 113.60943 * 89.11302 * 9 8 6 11 11 N 1.46496 * 113.61485 * 219.93669 * 9 8 6 12 12 C 1.34777 * 119.99431 * 205.00107 * 11 9 8 13 13 O 1.21270 * 120.00542 * 359.97438 * 12 11 9 14 14 C 1.50704 * 119.99518 * 179.97438 * 12 11 9 15 15 C 1.50694 * 109.46968 * 185.71181 * 14 12 11 16 16 C 1.39311 * 120.06267 * 81.07604 * 15 14 12 17 17 C 1.48391 * 120.11823 * 359.97438 * 16 15 14 18 18 C 1.39336 * 120.12171 * 236.48842 * 17 16 15 19 19 C 1.38027 * 119.87938 * 179.81141 * 18 17 16 20 20 C 1.38320 * 120.11531 * 0.44720 * 19 18 17 21 21 C 1.50703 * 119.87345 * 179.76545 * 20 19 18 22 22 O 1.42901 * 109.47125 * 120.01895 * 21 20 19 23 23 Si 1.86294 * 109.47247 * 0.02562 * 21 20 19 24 24 C 1.38319 * 120.24871 * 359.78279 * 20 19 18 25 25 C 1.38022 * 120.12091 * 0.02562 * 24 20 19 26 26 C 1.39360 * 119.76269 * 180.02562 * 16 15 14 27 27 C 1.37995 * 119.87542 * 359.97438 * 26 16 15 28 28 C 1.38342 * 120.12100 * 359.97438 * 27 26 16 29 29 C 1.38044 * 120.06526 * 260.80019 * 15 14 12 30 30 C 1.53781 * 113.61405 * 272.49985 * 6 5 2 31 31 H 1.08999 * 109.47216 * 54.48824 * 1 2 3 32 32 H 1.09001 * 109.46935 * 174.48155 * 1 2 3 33 33 H 1.08997 * 109.47062 * 294.48502 * 1 2 3 34 34 H 1.08997 * 109.46855 * 300.00121 * 5 2 1 35 35 H 1.09005 * 109.46299 * 60.00077 * 5 2 1 36 36 H 1.08999 * 113.61196 * 254.52821 * 8 6 5 37 37 H 1.08998 * 113.61564 * 25.43042 * 8 6 5 38 38 H 0.97002 * 120.00199 * 24.99343 * 11 9 8 39 39 H 1.08994 * 109.47496 * 305.71590 * 14 12 11 40 40 H 1.08999 * 109.46848 * 65.71625 * 14 12 11 41 41 H 1.08001 * 120.06106 * 0.02562 * 18 17 16 42 42 H 1.07994 * 119.94049 * 180.21333 * 19 18 17 43 43 H 1.08997 * 109.47063 * 240.01715 * 21 20 19 44 44 H 0.96700 * 114.00308 * 179.97438 * 22 21 20 45 45 H 1.48500 * 109.99889 * 298.68063 * 23 21 20 46 46 H 1.48498 * 110.00233 * 59.99976 * 23 21 20 47 47 H 1.08001 * 119.93751 * 179.97438 * 24 20 19 48 48 H 1.07994 * 120.05991 * 179.97438 * 25 24 20 49 49 H 1.08007 * 120.06255 * 179.97438 * 26 16 15 50 50 H 1.08001 * 119.93590 * 180.02562 * 27 26 16 51 51 H 1.08001 * 119.87495 * 180.02562 * 28 27 26 52 52 H 1.08005 * 119.93453 * 0.02562 * 29 15 14 53 53 H 1.08999 * 113.61617 * 334.56807 * 30 6 5 54 54 H 1.08999 * 113.61667 * 105.47098 * 30 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.2667 1.3469 0.0000 4 8 2.2667 -0.8842 1.0162 5 6 2.1888 -0.7357 -1.6152 6 6 3.7055 -0.8184 -1.7984 7 1 4.2206 -1.1760 -0.9068 8 6 4.1318 -1.5404 -3.0875 9 6 5.2284 -0.4717 -3.2300 10 1 6.1609 -0.7336 -2.7301 11 7 5.4298 -0.0177 -4.6083 12 6 6.6187 0.4958 -4.9816 13 8 7.5215 0.5825 -4.1766 14 6 6.8260 0.9623 -6.3995 15 6 8.2673 1.3578 -6.5925 16 6 9.2326 0.3824 -6.8320 17 6 8.8450 -1.0485 -6.8974 18 6 9.4530 -1.9769 -6.0548 19 6 9.0858 -3.3060 -6.1171 20 6 8.1229 -3.7183 -7.0204 21 6 7.7299 -5.1717 -7.0874 22 8 6.3361 -5.3020 -6.8003 23 14 8.7146 -6.1396 -5.8367 24 6 7.5194 -2.8018 -7.8625 25 6 7.8761 -1.4697 -7.8059 26 6 10.5637 0.7551 -7.0090 27 6 10.9187 2.0871 -6.9467 28 6 9.9558 3.0518 -6.7096 29 6 8.6327 2.6879 -6.5378 30 6 4.3236 0.4545 -2.4003 31 1 -0.3633 0.5969 -0.8365 32 1 -0.3633 -1.0229 -0.0988 33 1 -0.3633 0.4259 0.9352 34 1 1.7611 -1.7370 -1.6664 35 1 1.7611 -0.1170 -2.4042 36 1 4.5202 -2.5445 -2.9175 37 1 3.3813 -1.5038 -3.8770 38 1 4.7076 -0.0867 -5.2521 39 1 6.5754 0.1553 -7.0879 40 1 6.1841 1.8209 -6.5970 41 1 10.2077 -1.6565 -5.3518 42 1 9.5540 -4.0257 -5.4621 43 1 7.9326 -5.5571 -8.0866 44 1 6.0127 -6.2130 -6.8261 45 1 10.1641 -6.0381 -6.1430 46 1 8.4469 -5.6237 -4.4702 47 1 6.7684 -3.1294 -8.5661 48 1 7.4046 -0.7551 -8.4642 49 1 11.3161 0.0028 -7.1946 50 1 11.9499 2.3771 -7.0841 51 1 10.2380 4.0932 -6.6620 52 1 7.8845 3.4454 -6.3562 53 1 3.6255 1.0365 -3.0020 54 1 4.8669 1.0609 -1.6756 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_16534806_13158394.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 9 2021 12:58:19 Heat of formation + Delta-G solvation = -58.891764 kcal Electronic energy + Delta-G solvation = -37834.967786 eV Core-core repulsion = 33024.265919 eV Total energy + Delta-G solvation = -4810.701866 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 416.154 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -41.66408 -40.90669 -39.90915 -39.20622 -37.97805 -37.53149 -37.00547 -34.89551 -34.39125 -33.52475 -32.14604 -31.15260 -30.83074 -30.16499 -28.69950 -26.78761 -26.60506 -24.47517 -24.01560 -23.41712 -22.59259 -21.79453 -21.46476 -20.68416 -19.80101 -18.40840 -18.36675 -18.08590 -17.89637 -17.45608 -17.07993 -17.03156 -16.97932 -16.69776 -16.54948 -16.29029 -16.15949 -15.74633 -15.65957 -15.16734 -15.06193 -14.76053 -14.63335 -14.50102 -14.20474 -14.03913 -13.92349 -13.91088 -13.90330 -13.64451 -13.49724 -13.45987 -13.34128 -13.26187 -13.08933 -13.01080 -13.00043 -12.64620 -12.56459 -12.25288 -12.18244 -12.07317 -12.04286 -11.94913 -11.71390 -11.52400 -11.13435 -10.94591 -10.44515 -10.17093 -10.07834 -10.07116 -9.80535 -9.30826 -5.01845 -0.91212 -0.20848 0.21484 0.34165 0.51768 1.26769 1.56866 1.59206 1.91324 1.94147 2.16037 2.48266 2.75291 2.81919 3.10880 3.34053 3.34610 3.41197 3.46034 3.61033 3.61623 3.69084 3.71143 3.77078 3.85524 3.92969 3.96211 4.06175 4.09909 4.10532 4.17137 4.21581 4.27631 4.32097 4.37789 4.44152 4.49206 4.51023 4.53708 4.61937 4.68294 4.71770 4.76595 4.79135 4.84902 4.90282 4.91946 4.98110 4.99051 5.03171 5.19597 5.21123 5.29683 5.33982 5.44855 5.51229 5.53019 5.56642 5.79938 5.98514 6.53076 6.90887 7.24911 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.640 4.640 2 S 2.406 3.594 3 O -0.988 6.988 4 O -0.996 6.996 5 C -0.579 4.579 6 C -0.110 4.110 7 H 0.091 0.909 8 C -0.111 4.111 9 C 0.112 3.888 10 H 0.080 0.920 11 N -0.706 5.706 12 C 0.513 3.487 13 O -0.580 6.580 14 C -0.108 4.108 15 C -0.063 4.063 16 C -0.053 4.053 17 C -0.041 4.041 18 C -0.112 4.112 19 C -0.140 4.140 20 C -0.088 4.088 21 C -0.066 4.066 22 O -0.557 6.557 23 Si 0.763 3.237 24 C -0.084 4.084 25 C -0.108 4.108 26 C -0.122 4.122 27 C -0.126 4.126 28 C -0.123 4.123 29 C -0.116 4.116 30 C -0.153 4.153 31 H 0.155 0.845 32 H 0.154 0.846 33 H 0.127 0.873 34 H 0.170 0.830 35 H 0.170 0.830 36 H 0.077 0.923 37 H 0.125 0.875 38 H 0.419 0.581 39 H 0.125 0.875 40 H 0.135 0.865 41 H 0.112 0.888 42 H 0.108 0.892 43 H 0.102 0.898 44 H 0.404 0.596 45 H -0.296 1.296 46 H -0.306 1.306 47 H 0.153 0.847 48 H 0.154 0.846 49 H 0.125 0.875 50 H 0.140 0.860 51 H 0.143 0.857 52 H 0.141 0.859 53 H 0.114 0.886 54 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.620 -4.826 -9.459 14.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.793 4.793 2 S 2.595 3.405 3 O -0.985 6.985 4 O -0.994 6.994 5 C -0.710 4.710 6 C -0.130 4.130 7 H 0.109 0.891 8 C -0.150 4.150 9 C 0.007 3.993 10 H 0.098 0.902 11 N -0.358 5.358 12 C 0.301 3.699 13 O -0.459 6.459 14 C -0.147 4.147 15 C -0.064 4.064 16 C -0.053 4.053 17 C -0.041 4.041 18 C -0.130 4.130 19 C -0.158 4.158 20 C -0.088 4.088 21 C -0.177 4.177 22 O -0.367 6.367 23 Si 0.671 3.329 24 C -0.102 4.102 25 C -0.126 4.126 26 C -0.140 4.140 27 C -0.144 4.144 28 C -0.141 4.141 29 C -0.134 4.134 30 C -0.192 4.192 31 H 0.174 0.826 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.188 0.812 35 H 0.188 0.812 36 H 0.096 0.904 37 H 0.143 0.857 38 H 0.257 0.743 39 H 0.143 0.857 40 H 0.153 0.847 41 H 0.131 0.869 42 H 0.125 0.875 43 H 0.119 0.881 44 H 0.256 0.744 45 H -0.224 1.224 46 H -0.234 1.234 47 H 0.171 0.829 48 H 0.171 0.829 49 H 0.143 0.857 50 H 0.158 0.842 51 H 0.161 0.839 52 H 0.159 0.841 53 H 0.133 0.867 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.742 -3.804 -7.526 11.448 hybrid contribution 0.090 0.336 -0.180 0.392 sum -7.652 -3.468 -7.706 11.400 Atomic orbital electron populations 1.30114 1.22184 1.13880 1.13103 1.07830 0.79871 0.74431 0.78348 1.93553 1.80838 1.36705 1.87438 1.93550 1.81084 1.67756 1.56960 1.30131 1.02878 1.16434 1.21524 1.22059 0.92665 0.98565 0.99716 0.89076 1.23323 0.97179 0.97687 0.96846 1.22380 0.97892 0.96392 0.82670 0.90195 1.45801 1.14527 1.63149 1.12319 1.20991 0.82013 0.76443 0.90456 1.90720 1.43501 1.56316 1.55317 1.20944 0.94684 1.05527 0.93575 1.19474 0.94373 0.93054 0.99455 1.18710 0.93774 0.91477 1.01347 1.18858 0.97030 0.91777 0.96440 1.21121 1.00191 0.92631 0.99048 1.20867 0.99777 0.95882 0.99237 1.19725 0.96639 0.95855 0.96541 1.24589 0.89336 0.95495 1.08261 1.86416 1.21300 1.35158 1.93825 0.94788 0.76065 0.86890 0.75141 1.21171 0.98762 0.91928 0.98320 1.21512 0.96583 0.96548 0.97948 1.21349 0.95046 0.97054 1.00503 1.21366 1.00683 0.92596 0.99710 1.21505 0.92987 1.00656 0.98940 1.21258 0.97279 0.95398 0.99487 1.23725 0.99415 0.96617 0.99419 0.82650 0.82785 0.85448 0.81173 0.81228 0.90379 0.85697 0.74328 0.85724 0.84722 0.86948 0.87494 0.88054 0.74440 1.22364 1.23445 0.82903 0.82866 0.85726 0.84189 0.83949 0.84111 0.86739 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.64 6.91 10.62 113.37 1.20 8.12 16 2 S 2.41 -5.35 5.35 -56.49 -0.30 -5.65 16 3 O -0.99 -7.21 18.10 -127.37 -2.30 -9.52 16 4 O -1.00 -8.05 18.10 -127.37 -2.31 -10.36 16 5 C -0.58 5.79 5.64 71.98 0.41 6.20 16 6 C -0.11 0.28 3.66 -10.27 -0.04 0.24 16 7 H 0.09 0.09 8.13 -2.39 -0.02 0.07 16 8 C -0.11 0.53 7.39 31.12 0.23 0.76 16 9 C 0.11 0.24 4.24 45.52 0.19 0.43 16 10 H 0.08 0.77 7.46 -2.39 -0.02 0.75 16 11 N -0.71 0.31 5.36 -440.03 -2.36 -2.04 16 12 C 0.51 3.10 7.66 87.66 0.67 3.77 16 13 O -0.58 -9.80 15.65 -3.00 -0.05 -9.85 16 14 C -0.11 0.04 5.31 29.10 0.15 0.19 16 15 C -0.06 -0.33 4.38 -19.65 -0.09 -0.42 16 16 C -0.05 -0.40 5.40 -20.04 -0.11 -0.51 16 17 C -0.04 -0.29 4.77 -20.04 -0.10 -0.38 16 18 C -0.11 -1.15 9.62 22.48 0.22 -0.93 16 19 C -0.14 -1.27 8.65 22.24 0.19 -1.08 16 20 C -0.09 -0.41 5.43 -19.82 -0.11 -0.52 16 21 C -0.07 0.09 2.81 71.24 0.20 0.29 16 22 O -0.56 1.66 12.74 -148.98 -1.90 -0.24 16 23 Si 0.76 -0.17 29.78 68.60 2.04 1.87 16 24 C -0.08 -0.13 9.59 22.24 0.21 0.09 16 25 C -0.11 -0.20 7.82 22.48 0.18 -0.03 16 26 C -0.12 -0.87 9.62 22.48 0.22 -0.65 16 27 C -0.13 -0.61 10.03 22.24 0.22 -0.39 16 28 C -0.12 -0.49 10.04 22.31 0.22 -0.26 16 29 C -0.12 -0.49 9.66 22.24 0.21 -0.27 16 30 C -0.15 -0.12 7.43 31.12 0.23 0.11 16 31 H 0.16 -2.45 8.14 -2.39 -0.02 -2.47 16 32 H 0.15 -2.38 8.14 -2.39 -0.02 -2.40 16 33 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 34 H 0.17 -2.75 8.14 -2.39 -0.02 -2.77 16 35 H 0.17 -2.84 7.84 -2.39 -0.02 -2.86 16 36 H 0.08 -0.25 8.14 -2.39 -0.02 -0.27 16 37 H 0.12 -1.38 8.08 -2.39 -0.02 -1.40 16 38 H 0.42 -3.50 8.73 -92.71 -0.81 -4.31 16 39 H 0.13 -0.52 4.84 -2.39 -0.01 -0.53 16 40 H 0.13 -0.89 8.01 -2.39 -0.02 -0.91 16 41 H 0.11 1.30 8.06 -2.91 -0.02 1.27 16 42 H 0.11 1.04 4.86 -2.91 -0.01 1.02 16 43 H 0.10 -0.62 7.96 -2.39 -0.02 -0.64 16 44 H 0.40 -5.37 8.74 -74.06 -0.65 -6.02 16 45 H -0.30 -1.84 7.11 99.48 0.71 -1.14 16 46 H -0.31 -2.71 7.11 99.48 0.71 -2.00 16 47 H 0.15 -0.50 8.06 -2.91 -0.02 -0.52 16 48 H 0.15 -0.54 7.11 -2.91 -0.02 -0.56 16 49 H 0.12 0.68 8.06 -2.91 -0.02 0.65 16 50 H 0.14 0.10 8.06 -2.91 -0.02 0.07 16 51 H 0.14 -0.08 8.06 -2.91 -0.02 -0.10 16 52 H 0.14 -0.04 8.04 -2.91 -0.02 -0.06 16 53 H 0.11 -0.45 7.89 -2.39 -0.02 -0.47 16 54 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 Total: 0.00 -44.34 455.91 -3.12 -47.46 By element: Atomic # 1 Polarization: -25.95 SS G_CDS: -0.48 Total: -26.43 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: 4.53 Total: 14.75 kcal Atomic # 7 Polarization: 0.31 SS G_CDS: -2.36 Total: -2.04 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: -6.55 Total: -29.96 kcal Atomic # 14 Polarization: -0.17 SS G_CDS: 2.04 Total: 1.87 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -0.30 Total: -5.65 kcal Total: -44.34 -3.12 -47.46 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_16534806_13158394.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.429 kcal (2) G-P(sol) polarization free energy of solvation -44.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds